Wall clock time and date at job start Tue Mar 31 2020 11:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38256 * 119.99715 * 2 1 4 4 C 1.38215 * 120.00062 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00082 * 359.97438 * 4 3 2 6 6 C 1.38211 * 120.00106 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00048 * 179.72210 * 6 5 4 8 8 H 1.08990 * 109.38643 * 325.92920 * 7 6 5 9 9 C 1.50263 * 109.38416 * 206.14052 * 7 6 5 10 10 O 1.21281 * 118.62140 * 42.66473 * 9 7 6 11 11 N 1.33716 * 122.74818 * 222.64651 * 9 7 6 12 12 C 1.46005 * 122.92990 * 1.68254 * 11 9 7 13 13 C 1.52987 * 110.04183 * 341.84173 * 12 11 9 14 14 N 1.46900 * 109.38737 * 85.72912 * 7 6 5 15 15 C 1.46899 * 111.00087 * 47.08055 * 14 7 6 16 16 C 1.50704 * 109.46852 * 178.10482 * 15 14 7 17 17 O 1.21295 * 120.00081 * 7.59741 * 16 15 14 18 18 N 1.34782 * 119.99790 * 187.58952 * 16 15 14 19 19 C 1.37096 * 119.99520 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00676 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99740 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99927 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00156 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47248 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47627 * 120.00237 * 23 21 19 26 26 H 1.48510 * 109.47186 * 240.00043 * 23 21 19 27 27 C 1.38214 * 120.00608 * 179.88817 * 2 1 3 28 28 H 1.08995 * 109.47748 * 90.00135 * 1 2 3 29 29 H 1.09012 * 109.46935 * 209.99948 * 1 2 3 30 30 H 1.08993 * 109.47530 * 329.99539 * 1 2 3 31 31 H 1.08004 * 120.00476 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.00372 * 180.02562 * 4 3 2 33 33 H 1.08007 * 120.00266 * 180.02562 * 5 4 3 34 34 H 0.97007 * 118.53287 * 181.71313 * 11 9 7 35 35 H 1.09003 * 109.37455 * 102.01508 * 12 11 9 36 36 H 1.09001 * 109.37593 * 221.78178 * 12 11 9 37 37 H 1.09003 * 109.58898 * 170.06317 * 13 12 11 38 38 H 1.09000 * 109.59269 * 290.36520 * 13 12 11 39 39 H 1.08997 * 109.47775 * 298.10732 * 15 14 7 40 40 H 1.08998 * 109.47253 * 58.11151 * 15 14 7 41 41 H 0.97001 * 120.00154 * 0.02562 * 18 16 15 42 42 H 0.97006 * 120.00177 * 180.02562 * 22 21 19 43 43 H 1.07999 * 119.99709 * 0.06885 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2716 0.0002 0.0016 6 6 3.5807 -1.1968 0.0027 7 6 4.3343 -2.5019 -0.0025 8 1 5.2503 -2.3884 -0.5821 9 6 3.4791 -3.5691 -0.6250 10 8 2.8493 -3.2988 -1.6256 11 7 3.3838 -4.8045 -0.1222 12 6 4.0722 -5.2207 1.0963 13 6 5.2065 -4.2456 1.4168 14 7 4.6733 -2.8747 1.3774 15 6 3.5086 -2.7353 2.2617 16 6 3.8815 -3.1698 3.6557 17 8 5.0367 -3.4257 3.9226 18 7 2.9313 -3.2740 4.6059 19 6 3.2706 -3.6689 5.8741 20 1 4.2993 -3.8960 6.1120 21 6 2.2910 -3.7768 6.8536 22 7 1.0392 -3.5009 6.5641 23 14 2.7533 -4.3141 8.5818 24 1 4.2156 -4.5640 8.6480 25 1 2.3891 -3.2455 9.5466 26 1 2.0226 -5.5606 8.9249 27 6 2.1981 -1.1969 0.0023 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.6581 2.1327 0.0004 32 1 4.1203 2.1328 0.0010 33 1 5.3517 0.0002 0.0024 34 1 2.8331 -5.4531 -0.5880 35 1 3.3637 -5.2362 1.9245 36 1 4.4852 -6.2195 0.9550 37 1 5.5999 -4.4567 2.4112 38 1 6.0012 -4.3539 0.6787 39 1 3.1883 -1.6936 2.2793 40 1 2.6950 -3.3593 1.8920 41 1 2.0074 -3.0697 4.3923 42 1 0.3553 -3.5759 7.2479 43 1 1.6582 -2.1322 0.0030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564101567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:46 Heat of formation + Delta-G solvation = -47.895281 kcal Electronic energy + Delta-G solvation = -27469.615380 eV Core-core repulsion = 23707.078421 eV Total energy + Delta-G solvation = -3762.536959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.43508 -40.19236 -39.86234 -38.13551 -35.97793 -35.64618 -33.65850 -33.29599 -32.40525 -30.16261 -29.83044 -27.79028 -26.94473 -25.68713 -24.17630 -23.17383 -21.86051 -21.29757 -20.21553 -19.50925 -18.55273 -18.13191 -17.62077 -17.44910 -16.88565 -16.63524 -16.35119 -16.13395 -15.69517 -15.64243 -15.23225 -15.12150 -14.72706 -14.62038 -14.24603 -14.03251 -13.88506 -13.60754 -13.44232 -13.29907 -13.08061 -13.05425 -12.82168 -12.62631 -12.39891 -12.27738 -12.09198 -12.01912 -11.86989 -11.50191 -11.42918 -10.27472 -10.20999 -9.99743 -9.71477 -9.53578 -9.29286 -8.46060 -5.94704 0.37172 0.50667 1.37265 1.38243 1.44098 1.57751 1.98023 2.05928 2.27649 2.59009 2.92877 3.20304 3.28480 3.34205 3.54022 3.84944 3.92450 4.01081 4.06335 4.17314 4.18901 4.29173 4.36804 4.44678 4.48527 4.53450 4.60202 4.76168 4.79255 4.80047 4.95720 5.04859 5.13359 5.28486 5.42605 5.52963 5.55039 5.63364 5.66978 5.73259 5.88412 6.02468 6.08311 6.13963 6.57956 7.01580 7.12188 7.53341 8.07008 8.71519 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.004427 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.334463 B = 6323.727370 C = 7317.054461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.108 4.108 6 C -0.083 4.083 7 C 0.115 3.885 8 H 0.141 0.859 9 C 0.493 3.507 10 O -0.575 6.575 11 N -0.709 5.709 12 C 0.075 3.925 13 C 0.023 3.977 14 N -0.498 5.498 15 C 0.060 3.940 16 C 0.447 3.553 17 O -0.602 6.602 18 N -0.570 5.570 19 C -0.327 4.327 20 H 0.086 0.914 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.993 3.007 24 H -0.269 1.269 25 H -0.274 1.274 26 H -0.273 1.273 27 C -0.112 4.112 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.406 0.594 35 H 0.052 0.948 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.392 0.608 42 H 0.277 0.723 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.872 3.728 -13.598 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.127 4.127 6 C -0.084 4.084 7 C 0.004 3.996 8 H 0.159 0.841 9 C 0.278 3.722 10 O -0.454 6.454 11 N -0.361 5.361 12 C -0.051 4.051 13 C -0.104 4.104 14 N -0.221 5.221 15 C -0.071 4.071 16 C 0.234 3.766 17 O -0.488 6.488 18 N -0.206 5.206 19 C -0.457 4.457 20 H 0.104 0.896 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.816 3.184 24 H -0.193 1.193 25 H -0.200 1.200 26 H -0.198 1.198 27 C -0.131 4.131 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.243 0.757 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.071 0.929 41 H 0.225 0.775 42 H 0.086 0.914 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.659 4.149 -13.512 14.382 hybrid contribution -1.419 -1.234 0.411 1.925 sum 1.241 2.915 -13.101 13.478 Atomic orbital electron populations 1.20804 0.90025 1.03246 1.02812 1.20159 0.97276 0.92990 0.99801 1.21379 0.94738 0.97866 0.99873 1.21440 0.94411 0.98569 0.99346 1.21170 1.00907 0.91349 0.99241 1.19259 0.93248 0.93571 1.02302 1.20949 0.98276 0.90554 0.89812 0.84144 1.21208 0.82165 0.84466 0.84349 1.90729 1.46544 1.80776 1.27310 1.45619 1.50482 1.12360 1.27675 1.22185 0.95739 1.01483 0.85649 1.22970 0.96533 0.84661 1.06278 1.62333 1.29376 1.25981 1.04401 1.21748 0.92445 1.02257 0.90689 1.20277 0.85761 0.83384 0.87138 1.90413 1.20059 1.55933 1.82387 1.41931 1.09607 1.59621 1.09427 1.19735 0.95630 1.43639 0.86661 0.89569 1.26049 0.94589 0.96983 1.03639 1.69695 1.01124 1.49007 1.36458 0.84870 0.78455 0.78028 0.77007 1.19335 1.19994 1.19798 1.20930 0.93759 0.97759 1.00661 0.90444 0.92361 0.89906 0.83666 0.83168 0.84215 0.75741 0.92967 0.86697 0.86949 0.87738 0.88790 0.92936 0.77460 0.91386 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 10.01 71.23 0.71 -1.72 16 2 C -0.10 -2.69 5.88 -19.87 -0.12 -2.80 16 3 C -0.12 -2.73 9.70 22.27 0.22 -2.51 16 4 C -0.12 -2.64 10.05 22.27 0.22 -2.42 16 5 C -0.11 -2.71 9.72 22.27 0.22 -2.50 16 6 C -0.08 -2.39 3.62 -19.87 -0.07 -2.46 16 7 C 0.11 3.20 2.69 43.29 0.12 3.32 16 8 H 0.14 3.37 8.11 -2.39 -0.02 3.35 16 9 C 0.49 14.37 5.56 87.69 0.49 14.86 16 10 O -0.57 -19.96 15.99 -3.03 -0.05 -20.01 16 11 N -0.71 -17.52 5.32 -466.08 -2.48 -20.00 16 12 C 0.07 1.84 6.43 86.47 0.56 2.40 16 13 C 0.02 0.65 5.46 86.25 0.47 1.12 16 14 N -0.50 -15.53 4.79 -884.54 -4.24 -19.77 16 15 C 0.06 2.15 3.84 85.56 0.33 2.48 16 16 C 0.45 20.28 6.98 87.66 0.61 20.90 16 17 O -0.60 -30.25 13.41 -3.08 -0.04 -30.29 16 18 N -0.57 -28.37 5.29 -306.97 -1.62 -29.99 16 19 C -0.33 -17.81 9.68 84.04 0.81 -16.99 16 20 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 23 Si 0.99 41.67 29.55 68.60 2.03 43.70 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 C -0.11 -3.39 6.82 22.27 0.15 -3.23 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.34 8.09 -2.38 -0.02 1.32 16 30 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 31 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.41 8.76 8.84 -92.70 -0.82 7.94 16 35 H 0.05 1.55 6.66 -2.39 -0.02 1.53 16 36 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.11 3.93 5.42 -2.39 -0.01 3.92 16 38 H 0.10 2.36 8.08 -2.39 -0.02 2.34 16 39 H 0.09 3.47 6.39 -2.39 -0.02 3.45 16 40 H 0.05 1.84 6.02 -2.39 -0.01 1.82 16 41 H 0.39 19.21 7.90 -92.71 -0.73 18.48 16 42 H 0.28 13.80 8.31 -92.70 -0.77 13.03 16 43 H 0.10 3.24 6.54 -2.91 -0.02 3.22 16 Total: -1.00 -66.67 346.71 -1.42 -68.08 By element: Atomic # 1 Polarization: 47.30 SS G_CDS: -0.49 Total: 46.81 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.18 Total: 10.22 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -8.05 Total: -118.50 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -0.09 Total: -50.31 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -66.67 -1.42 -68.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564101567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.189 kcal (2) G-P(sol) polarization free energy of solvation -66.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds