Wall clock time and date at job start Tue Mar 31 2020 11:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00063 * 2 1 4 4 H 1.48507 * 109.47119 * 269.99847 * 3 2 1 5 5 H 1.48501 * 109.47196 * 29.99706 * 3 2 1 6 6 H 1.48491 * 109.47040 * 150.00149 * 3 2 1 7 7 C 1.37873 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00102 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00169 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47344 * 179.97438 * 9 7 2 11 11 C 1.53045 * 109.46106 * 184.99953 * 10 9 7 12 12 C 1.53185 * 109.31342 * 178.61463 * 11 10 9 13 13 N 1.46926 * 108.77524 * 54.63463 * 12 11 10 14 14 S 1.65607 * 120.62900 * 126.11598 * 13 12 11 15 15 O 1.42102 * 104.27874 * 206.07153 * 14 13 12 16 16 O 1.42094 * 104.27685 * 333.92979 * 14 13 12 17 17 C 1.81404 * 104.44904 * 90.00281 * 14 13 12 18 18 C 1.52997 * 109.47003 * 179.97438 * 17 14 13 19 19 H 1.09002 * 110.80488 * 308.62891 * 18 17 14 20 20 C 1.54816 * 110.90774 * 184.99643 * 18 17 14 21 21 C 1.54098 * 104.18976 * 220.92333 * 20 18 17 22 22 O 1.43751 * 107.29291 * 357.96843 * 21 20 18 23 23 C 1.44378 * 106.97391 * 26.51884 * 22 21 20 24 24 C 1.46924 * 118.73991 * 306.39104 * 13 12 11 25 25 C 1.53038 * 109.45866 * 64.93513 * 10 9 7 26 26 H 0.96999 * 119.99904 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47180 * 59.99332 * 9 7 2 28 28 H 1.09004 * 109.46830 * 300.00053 * 9 7 2 29 29 H 1.08994 * 109.44975 * 304.96373 * 10 9 7 30 30 H 1.08998 * 109.49685 * 58.65987 * 11 10 9 31 31 H 1.09001 * 109.52360 * 298.58059 * 11 10 9 32 32 H 1.09001 * 109.59106 * 294.85078 * 12 11 10 33 33 H 1.09004 * 109.58960 * 174.42271 * 12 11 10 34 34 H 1.09002 * 109.46488 * 299.99868 * 17 14 13 35 35 H 1.08995 * 109.47054 * 59.99835 * 17 14 13 36 36 H 1.09000 * 110.48399 * 339.59924 * 20 18 17 37 37 H 1.09000 * 110.48505 * 102.11141 * 20 18 17 38 38 H 1.09000 * 109.88245 * 117.39486 * 21 20 18 39 39 H 1.08999 * 109.87716 * 238.54799 * 21 20 18 40 40 H 1.09005 * 110.61781 * 201.44120 * 23 22 21 41 41 H 1.08992 * 110.62544 * 78.43668 * 23 22 21 42 42 H 1.09004 * 109.58777 * 173.39544 * 24 13 12 43 43 H 1.08994 * 109.58607 * 293.81880 * 24 13 12 44 44 H 1.09005 * 109.49668 * 301.33523 * 25 10 9 45 45 H 1.09001 * 109.50363 * 61.43178 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 -0.0001 11 6 5.5467 -2.6382 0.1263 12 6 6.0507 -4.0843 0.1606 13 7 5.5425 -4.7905 -1.0234 14 16 6.5794 -5.5833 -2.0426 15 8 5.9064 -5.5868 -3.2941 16 8 7.8179 -4.9063 -1.8786 17 6 6.6790 -7.2647 -1.3688 18 6 7.6188 -8.1062 -2.2345 19 1 7.3424 -8.0363 -3.2866 20 6 7.6318 -9.5808 -1.7634 21 6 9.1136 -9.9937 -1.8554 22 8 9.8391 -8.8681 -2.3780 23 6 9.0947 -7.6839 -2.0203 24 6 4.0976 -4.7747 -1.2893 25 6 3.6155 -3.3207 -1.3075 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6808 0.8905 28 1 3.8751 -0.6797 -0.8895 29 1 3.5868 -3.1753 0.8419 30 1 5.8360 -2.1301 1.0461 31 1 5.9835 -2.1209 -0.7280 32 1 5.6880 -4.5764 1.0631 33 1 7.1406 -4.0918 0.1507 34 1 7.0616 -7.2252 -0.3489 35 1 5.6863 -7.7148 -1.3673 36 1 7.2779 -9.6559 -0.7352 37 1 7.0203 -10.1972 -2.4224 38 1 9.4893 -10.2493 -0.8646 39 1 9.2197 -10.8467 -2.5256 40 1 9.3555 -6.8537 -2.6768 41 1 9.2709 -7.4200 -0.9776 42 1 3.8989 -5.2376 -2.2560 43 1 3.5758 -5.3230 -0.5051 44 1 2.5303 -3.2985 -1.4080 45 1 4.0701 -2.7971 -2.1485 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568388476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:08 Heat of formation + Delta-G solvation = -131.588062 kcal Electronic energy + Delta-G solvation = -25488.957656 eV Core-core repulsion = 21825.942706 eV Total energy + Delta-G solvation = -3663.014950 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.88439 -38.41898 -37.27980 -36.04719 -34.25632 -34.03959 -32.02172 -30.79224 -30.38566 -28.28658 -27.12802 -24.18823 -23.14989 -23.01308 -21.38002 -21.08102 -19.63820 -18.77990 -17.75406 -17.31074 -16.71773 -16.45664 -16.21530 -15.81467 -15.57145 -14.68460 -14.37681 -14.28920 -14.08013 -13.75920 -13.53760 -13.50457 -13.16164 -13.00236 -12.73210 -12.50652 -12.43341 -12.21591 -11.97243 -11.86150 -11.81692 -11.62051 -11.45113 -11.24045 -11.02939 -10.84340 -10.79932 -10.55352 -10.33080 -10.13653 -9.88957 -9.66795 -9.52926 -9.05487 -8.78418 -8.52979 -6.04022 -4.01196 0.05273 2.51278 3.31668 3.37115 3.39225 3.42727 3.69268 3.76258 3.96056 4.14208 4.29765 4.46043 4.55176 4.60229 4.72229 4.75057 4.90065 5.10626 5.22168 5.23725 5.27678 5.28498 5.33928 5.35540 5.43452 5.47216 5.56587 5.60088 5.74171 5.75355 5.90540 6.05693 6.31303 6.32343 6.37120 6.57498 6.60413 6.83870 6.88745 7.02859 7.28216 7.45084 7.80661 8.54021 9.00574 9.59392 11.09212 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.037976 B = 0.002780 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.130351 B =10070.297961 C =10299.770144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.070 4.070 11 C -0.130 4.130 12 C 0.119 3.881 13 N -0.995 5.995 14 S 2.603 3.397 15 O -0.951 6.951 16 O -0.952 6.952 17 C -0.628 4.628 18 C -0.115 4.115 19 H 0.101 0.899 20 C -0.144 4.144 21 C 0.043 3.957 22 O -0.372 6.372 23 C 0.037 3.963 24 C 0.114 3.886 25 C -0.117 4.117 26 H 0.262 0.738 27 H 0.016 0.984 28 H 0.011 0.989 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.094 -19.736 -0.803 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.089 4.089 11 C -0.169 4.169 12 C -0.006 4.006 13 N -0.834 5.834 14 S 2.696 3.304 15 O -0.941 6.941 16 O -0.942 6.942 17 C -0.755 4.755 18 C -0.136 4.136 19 H 0.119 0.881 20 C -0.183 4.183 21 C -0.034 4.034 22 O -0.291 6.291 23 C -0.040 4.040 24 C -0.010 4.010 25 C -0.156 4.156 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.029 0.971 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.123 0.877 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.559 -19.274 -1.657 25.465 hybrid contribution -0.230 0.444 0.716 0.873 sum 16.329 -18.831 -0.942 24.942 Atomic orbital electron populations 1.69910 1.06278 1.26815 1.51395 1.25030 0.94700 0.99144 0.94699 0.86805 0.80344 0.83777 0.78490 1.20378 1.21540 1.19058 1.21136 0.89435 0.94309 1.50427 0.90845 1.19635 0.97176 0.91758 0.96251 1.20974 0.92138 0.98910 0.96886 1.22004 0.98097 0.94528 1.02249 1.21522 0.98802 0.93817 0.86474 1.57636 1.18648 1.65507 1.41583 1.05226 0.73997 0.76534 0.74640 1.93602 1.74190 1.86693 1.39604 1.93585 1.43968 1.70426 1.86234 1.30758 1.08637 1.24564 1.11559 1.22492 0.94996 0.95976 1.00094 0.88108 1.22991 0.97574 0.94653 1.03035 1.23215 0.90341 0.90296 0.99506 1.88909 1.47589 1.14765 1.77848 1.23945 0.88463 0.89494 1.02062 1.21665 0.78115 1.00013 1.01219 1.21854 1.02559 0.92630 0.98564 0.92820 0.96614 0.97051 0.91745 0.91132 0.91814 0.91596 0.89542 0.84756 0.84430 0.89910 0.89743 0.92030 0.89493 0.87695 0.90874 0.89513 0.91555 0.89228 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 2 C 0.07 1.86 5.47 -17.82 -0.10 1.77 16 3 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.07 8.94 -34.44 -0.31 -14.38 16 8 H 0.07 2.12 7.30 -52.49 -0.38 1.74 16 9 C -0.01 -0.25 3.52 -27.88 -0.10 -0.35 16 10 C -0.07 -1.29 2.10 -90.58 -0.19 -1.48 16 11 C -0.13 -1.97 5.36 -26.61 -0.14 -2.11 16 12 C 0.12 1.43 6.43 -3.71 -0.02 1.41 16 13 N -0.99 -12.34 3.22 -113.52 -0.37 -12.71 16 14 S 2.60 30.51 5.32 -107.50 -0.57 29.94 16 15 O -0.95 -14.26 16.58 -57.54 -0.95 -15.21 16 16 O -0.95 -13.19 15.62 -57.54 -0.90 -14.09 16 17 C -0.63 -4.60 5.55 37.16 0.21 -4.39 16 18 C -0.12 -0.92 3.09 -88.61 -0.27 -1.19 16 19 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 20 C -0.14 -0.88 6.60 -25.20 -0.17 -1.05 16 21 C 0.04 0.30 7.70 37.73 0.29 0.59 16 22 O -0.37 -3.79 11.52 -35.23 -0.41 -4.19 16 23 C 0.04 0.34 6.41 38.22 0.24 0.59 16 24 C 0.11 1.54 6.43 -3.71 -0.02 1.51 16 25 C -0.12 -2.04 5.19 -26.61 -0.14 -2.18 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 28 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.94 6.86 -51.93 -0.36 0.58 16 34 H 0.13 0.73 7.98 -51.92 -0.41 0.31 16 35 H 0.14 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.41 7.86 -51.93 -0.41 0.00 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 1.00 7.77 -51.93 -0.40 0.60 16 41 H 0.07 0.59 7.93 -51.93 -0.41 0.17 16 42 H 0.09 1.10 6.86 -51.93 -0.36 0.75 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.09 1.71 6.91 -51.93 -0.36 1.35 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 359.35 15.07 5.42 5.42 Total: -1.00 -34.34 359.35 -10.07 -44.41 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -7.68 Total: -2.56 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -0.72 Total: -21.27 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.41 Total: -39.43 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -2.26 Total: -33.50 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Atomic # 16 Polarization: 30.51 SS G_CDS: -0.57 Total: 29.94 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.34 -10.07 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568388476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.174 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds