Wall clock time and date at job start Tue Mar 31 2020 11:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00063 * 2 1 4 4 H 1.48507 * 109.47119 * 269.99847 * 3 2 1 5 5 H 1.48501 * 109.47196 * 29.99706 * 3 2 1 6 6 H 1.48491 * 109.47040 * 150.00149 * 3 2 1 7 7 C 1.37873 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00102 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00169 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47344 * 179.97438 * 9 7 2 11 11 C 1.53045 * 109.46106 * 184.99953 * 10 9 7 12 12 C 1.53185 * 109.31342 * 178.61463 * 11 10 9 13 13 N 1.46926 * 108.77524 * 54.63463 * 12 11 10 14 14 S 1.65607 * 120.62900 * 126.11598 * 13 12 11 15 15 O 1.42102 * 104.27874 * 206.07153 * 14 13 12 16 16 O 1.42094 * 104.27685 * 333.92979 * 14 13 12 17 17 C 1.81404 * 104.44904 * 90.00281 * 14 13 12 18 18 C 1.52997 * 109.47003 * 179.97438 * 17 14 13 19 19 H 1.09002 * 110.80488 * 308.62891 * 18 17 14 20 20 C 1.54816 * 110.90774 * 184.99643 * 18 17 14 21 21 C 1.54098 * 104.18976 * 220.92333 * 20 18 17 22 22 O 1.43751 * 107.29291 * 357.96843 * 21 20 18 23 23 C 1.44378 * 106.97391 * 26.51884 * 22 21 20 24 24 C 1.46924 * 118.73991 * 306.39104 * 13 12 11 25 25 C 1.53038 * 109.45866 * 64.93513 * 10 9 7 26 26 H 0.96999 * 119.99904 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47180 * 59.99332 * 9 7 2 28 28 H 1.09004 * 109.46830 * 300.00053 * 9 7 2 29 29 H 1.08994 * 109.44975 * 304.96373 * 10 9 7 30 30 H 1.08998 * 109.49685 * 58.65987 * 11 10 9 31 31 H 1.09001 * 109.52360 * 298.58059 * 11 10 9 32 32 H 1.09001 * 109.59106 * 294.85078 * 12 11 10 33 33 H 1.09004 * 109.58960 * 174.42271 * 12 11 10 34 34 H 1.09002 * 109.46488 * 299.99868 * 17 14 13 35 35 H 1.08995 * 109.47054 * 59.99835 * 17 14 13 36 36 H 1.09000 * 110.48399 * 339.59924 * 20 18 17 37 37 H 1.09000 * 110.48505 * 102.11141 * 20 18 17 38 38 H 1.09000 * 109.88245 * 117.39486 * 21 20 18 39 39 H 1.08999 * 109.87716 * 238.54799 * 21 20 18 40 40 H 1.09005 * 110.61781 * 201.44120 * 23 22 21 41 41 H 1.08992 * 110.62544 * 78.43668 * 23 22 21 42 42 H 1.09004 * 109.58777 * 173.39544 * 24 13 12 43 43 H 1.08994 * 109.58607 * 293.81880 * 24 13 12 44 44 H 1.09005 * 109.49668 * 301.33523 * 25 10 9 45 45 H 1.09001 * 109.50363 * 61.43178 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 -0.0001 11 6 5.5467 -2.6382 0.1263 12 6 6.0507 -4.0843 0.1606 13 7 5.5425 -4.7905 -1.0234 14 16 6.5794 -5.5833 -2.0426 15 8 5.9064 -5.5868 -3.2941 16 8 7.8179 -4.9063 -1.8786 17 6 6.6790 -7.2647 -1.3688 18 6 7.6188 -8.1062 -2.2345 19 1 7.3424 -8.0363 -3.2866 20 6 7.6318 -9.5808 -1.7634 21 6 9.1136 -9.9937 -1.8554 22 8 9.8391 -8.8681 -2.3780 23 6 9.0947 -7.6839 -2.0203 24 6 4.0976 -4.7747 -1.2893 25 6 3.6155 -3.3207 -1.3075 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6808 0.8905 28 1 3.8751 -0.6797 -0.8895 29 1 3.5868 -3.1753 0.8419 30 1 5.8360 -2.1301 1.0461 31 1 5.9835 -2.1209 -0.7280 32 1 5.6880 -4.5764 1.0631 33 1 7.1406 -4.0918 0.1507 34 1 7.0616 -7.2252 -0.3489 35 1 5.6863 -7.7148 -1.3673 36 1 7.2779 -9.6559 -0.7352 37 1 7.0203 -10.1972 -2.4224 38 1 9.4893 -10.2493 -0.8646 39 1 9.2197 -10.8467 -2.5256 40 1 9.3555 -6.8537 -2.6768 41 1 9.2709 -7.4200 -0.9776 42 1 3.8989 -5.2376 -2.2560 43 1 3.5758 -5.3230 -0.5051 44 1 2.5303 -3.2985 -1.4080 45 1 4.0701 -2.7971 -2.1485 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568388476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:07 Heat of formation + Delta-G solvation = -156.457785 kcal Electronic energy + Delta-G solvation = -25490.036088 eV Core-core repulsion = 21825.942706 eV Total energy + Delta-G solvation = -3664.093382 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.47272 -39.63115 -38.27050 -37.03664 -35.66763 -34.88133 -33.90166 -31.93323 -30.89524 -29.99572 -27.80240 -25.75275 -24.22159 -23.68105 -22.74791 -21.82150 -20.98022 -19.77746 -18.95789 -18.57248 -18.04418 -17.23929 -17.04414 -16.52145 -16.35880 -16.20817 -15.56025 -15.31665 -15.22271 -14.97222 -14.86368 -14.49870 -14.27904 -14.07541 -13.68038 -13.57484 -13.39759 -13.33812 -13.22493 -13.15013 -12.84104 -12.60078 -12.48443 -12.32545 -12.19393 -12.04939 -11.97853 -11.73639 -11.70432 -11.47221 -11.34107 -11.00784 -10.86843 -10.72050 -10.72029 -9.85208 -8.25459 -6.26387 -0.81016 1.35245 1.36352 1.47659 1.61046 2.37496 2.75702 2.92087 3.07395 3.10302 3.28902 3.55213 3.63707 3.76922 4.02710 4.05278 4.07425 4.13251 4.24315 4.30872 4.35320 4.45355 4.55017 4.55917 4.63960 4.68446 4.77766 4.84561 4.86123 4.87173 4.98521 4.99755 5.04173 5.11428 5.21891 5.26055 5.33190 5.42916 5.51144 5.67624 5.77911 5.78597 5.81549 6.35341 6.81122 7.37360 8.90749 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.037976 B = 0.002780 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.130351 B =10070.297961 C =10299.770144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.941 3.059 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.514 4.514 8 H 0.043 0.957 9 C -0.011 4.011 10 C -0.067 4.067 11 C -0.130 4.130 12 C 0.119 3.881 13 N -0.999 5.999 14 S 2.597 3.403 15 O -0.994 6.994 16 O -0.981 6.981 17 C -0.593 4.593 18 C -0.124 4.124 19 H 0.094 0.906 20 C -0.137 4.137 21 C 0.034 3.966 22 O -0.400 6.400 23 C 0.028 3.972 24 C 0.123 3.877 25 C -0.120 4.120 26 H 0.263 0.737 27 H 0.019 0.981 28 H 0.004 0.996 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.854 -21.760 0.809 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.766 3.234 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.552 4.552 8 H 0.062 0.938 9 C -0.049 4.049 10 C -0.086 4.086 11 C -0.169 4.169 12 C -0.005 4.005 13 N -0.837 5.837 14 S 2.696 3.304 15 O -0.985 6.985 16 O -0.972 6.972 17 C -0.726 4.726 18 C -0.144 4.144 19 H 0.112 0.888 20 C -0.176 4.176 21 C -0.043 4.043 22 O -0.320 6.320 23 C -0.049 4.049 24 C -0.002 4.002 25 C -0.159 4.159 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.023 0.977 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.185 0.815 35 H 0.185 0.815 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.079 0.921 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 18.334 -21.251 -0.059 28.067 hybrid contribution -0.769 0.958 0.183 1.242 sum 17.565 -20.293 0.123 26.840 Atomic orbital electron populations 1.70055 1.08050 1.27777 1.53450 1.25930 0.95512 1.03125 0.94810 0.85789 0.79686 0.79211 0.78731 1.20080 1.21146 1.17104 1.21482 0.91818 0.93083 1.48801 0.93847 1.19633 0.94196 0.95230 0.95813 1.20888 0.94593 0.95786 0.97286 1.21972 0.95238 0.97387 1.02277 1.21624 0.99774 0.91644 0.87473 1.57546 1.17873 1.66735 1.41543 1.05192 0.72941 0.78306 0.73968 1.93548 1.74751 1.87935 1.42248 1.93545 1.44712 1.72530 1.86364 1.30461 1.10541 1.19118 1.12448 1.22578 0.94174 0.97522 1.00141 0.88780 1.23021 0.97138 0.92871 1.04541 1.23460 0.90808 0.89619 1.00376 1.88879 1.48710 1.15861 1.78504 1.24043 0.89342 0.89069 1.02438 1.21527 0.79087 0.96950 1.02672 1.21786 1.00753 0.95797 0.97536 0.92787 0.96292 0.97731 0.91382 0.89784 0.93408 0.88425 0.87982 0.81513 0.81545 0.87810 0.88499 0.90757 0.88576 0.89292 0.89563 0.89066 0.88806 0.92085 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 2 C 0.00 0.14 5.47 84.65 0.46 0.60 16 3 Si 0.94 44.94 27.47 68.60 1.88 46.83 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 7 C -0.51 -28.80 8.94 25.60 0.23 -28.57 16 8 H 0.04 2.62 7.30 -2.91 -0.02 2.60 16 9 C -0.01 -0.52 3.52 29.85 0.10 -0.42 16 10 C -0.07 -2.41 2.10 -10.77 -0.02 -2.44 16 11 C -0.13 -3.72 5.36 30.67 0.16 -3.55 16 12 C 0.12 2.49 6.43 86.36 0.56 3.05 16 13 N -1.00 -22.44 3.22 -513.08 -1.65 -24.09 16 14 S 2.60 56.27 5.32 -56.49 -0.30 55.97 16 15 O -0.99 -29.51 16.58 -127.65 -2.12 -31.63 16 16 O -0.98 -26.10 15.62 -127.65 -1.99 -28.10 16 17 C -0.59 -6.16 5.55 71.98 0.40 -5.76 16 18 C -0.12 -1.60 3.09 -9.49 -0.03 -1.63 16 19 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 20 C -0.14 -1.12 6.60 31.59 0.21 -0.91 16 21 C 0.03 0.37 7.70 72.35 0.56 0.93 16 22 O -0.40 -7.54 11.52 -148.98 -1.72 -9.26 16 23 C 0.03 0.46 6.41 72.67 0.47 0.93 16 24 C 0.12 3.10 6.43 86.36 0.56 3.66 16 25 C -0.12 -4.24 5.19 30.67 0.16 -4.08 16 26 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 27 H 0.02 0.85 7.20 -2.39 -0.02 0.84 16 28 H 0.00 0.21 7.57 -2.38 -0.02 0.19 16 29 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.87 6.86 -2.38 -0.02 1.85 16 34 H 0.17 0.80 7.98 -2.39 -0.02 0.78 16 35 H 0.17 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.10 0.45 7.86 -2.39 -0.02 0.43 16 37 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 1.70 7.77 -2.38 -0.02 1.68 16 41 H 0.09 1.15 7.93 -2.39 -0.02 1.13 16 42 H 0.09 2.24 6.86 -2.38 -0.02 2.22 16 43 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.06 2.46 6.91 -2.38 -0.02 2.44 16 45 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -78.08 359.35 -0.89 -78.96 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.90 Total: 8.75 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 3.81 Total: -38.19 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -1.35 Total: -83.33 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -5.83 Total: -68.99 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.83 kcal Atomic # 16 Polarization: 56.27 SS G_CDS: -0.30 Total: 55.97 kcal Total: -78.08 -0.89 -78.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568388476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.494 kcal (2) G-P(sol) polarization free energy of solvation -78.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds