Wall clock time and date at job start Tue Mar 31 2020 12:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39865 * 125.90040 * 2 1 4 4 C 1.35310 * 107.92114 * 180.14152 * 3 2 1 5 5 C 1.50698 * 126.12808 * 179.90462 * 4 3 2 6 6 C 1.50702 * 109.47465 * 84.68612 * 5 4 3 7 7 O 1.21283 * 119.99478 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00430 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99969 * 0.02562 * 8 6 5 10 10 C 1.50703 * 109.46877 * 269.72057 * 9 8 6 11 11 H 1.08005 * 119.99817 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00081 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99848 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00321 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46844 * 60.00490 * 14 12 10 16 16 H 1.48496 * 109.47153 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47045 * 300.00555 * 14 12 10 18 18 C 1.46499 * 120.00036 * 179.72648 * 8 6 5 19 19 C 1.50703 * 109.47126 * 270.27831 * 18 8 6 20 20 C 1.34507 * 125.79214 * 89.99864 * 19 18 8 21 21 C 1.41377 * 106.84473 * 179.97438 * 20 19 18 22 22 C 1.34519 * 106.84169 * 0.02562 * 21 20 19 23 23 O 1.34305 * 108.41620 * 359.73085 * 22 21 20 24 24 N 1.34946 * 107.74844 * 359.63779 * 4 3 2 25 25 C 1.46497 * 126.04330 * 180.20377 * 24 4 3 26 26 N 1.30839 * 125.89780 * 179.73972 * 2 1 3 27 27 H 1.09003 * 109.47149 * 270.23713 * 1 2 3 28 28 H 1.08997 * 109.47012 * 30.23543 * 1 2 3 29 29 H 1.09002 * 109.47281 * 150.23594 * 1 2 3 30 30 H 1.08005 * 126.04153 * 0.02562 * 3 2 1 31 31 H 1.09009 * 109.47290 * 324.68983 * 5 4 3 32 32 H 1.09001 * 109.47203 * 204.68759 * 5 4 3 33 33 H 1.09000 * 109.46803 * 29.71536 * 9 8 6 34 34 H 1.09000 * 109.47214 * 149.72329 * 9 8 6 35 35 H 0.96998 * 119.99944 * 179.97438 * 13 12 10 36 36 H 1.08994 * 109.47173 * 30.28203 * 18 8 6 37 37 H 1.09005 * 109.47077 * 150.28374 * 18 8 6 38 38 H 1.08002 * 126.57754 * 359.96948 * 20 19 18 39 39 H 1.07999 * 126.58322 * 179.97438 * 21 20 19 40 40 H 1.07994 * 125.79431 * 179.97438 * 22 21 20 41 41 H 1.08993 * 109.47109 * 89.99907 * 25 24 4 42 42 H 1.08997 * 109.47483 * 210.00623 * 25 24 4 43 43 H 1.09009 * 109.46807 * 330.00825 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7153 -0.0032 5 6 4.8350 1.5988 -0.0064 6 6 5.1685 2.0001 1.4074 7 8 4.4825 1.6070 2.3271 8 7 6.2294 2.7951 1.6499 9 6 7.0584 3.2695 0.5390 10 6 8.1760 2.2892 0.2919 11 1 8.2601 1.4014 0.9011 12 6 9.0904 2.5252 -0.7126 13 7 8.9877 3.6061 -1.4548 14 14 10.4762 1.3105 -1.0185 15 1 9.9044 -0.0172 -1.3586 16 1 11.3163 1.7913 -2.1446 17 1 11.3095 1.1919 0.2048 18 6 6.5500 3.1900 3.0238 19 6 5.8266 4.4685 3.3607 20 6 4.5981 4.5583 3.9010 21 6 4.3145 5.9356 4.0471 22 6 5.3865 6.6052 3.5867 23 8 6.3015 5.7113 3.1774 24 7 3.6088 -0.6341 0.0030 25 6 4.7898 -1.5009 0.0065 26 7 2.2742 -1.0599 0.0048 27 1 -0.3633 0.0043 1.0277 28 1 -0.3633 0.8878 -0.5175 29 1 -0.3634 -0.8921 -0.5102 30 1 1.9924 2.1598 0.0004 31 1 4.6362 2.4912 -0.6000 32 1 5.6757 1.0553 -0.4376 33 1 6.4468 3.3572 -0.3590 34 1 7.4783 4.2437 0.7893 35 1 9.6312 3.7724 -2.1612 36 1 6.2368 2.4036 3.7104 37 1 7.6249 3.3458 3.1156 38 1 3.9522 3.7360 4.1714 39 1 3.4104 6.3674 4.4502 40 1 5.4948 7.6793 3.5555 41 1 5.0832 -1.7111 1.0350 42 1 4.5561 -2.4356 -0.5030 43 1 5.6092 -1.0005 -0.5099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568394514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:57 Heat of formation + Delta-G solvation = 55.135448 kcal Electronic energy + Delta-G solvation = -26715.342250 eV Core-core repulsion = 22957.273039 eV Total energy + Delta-G solvation = -3758.069211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.20572 -41.02502 -39.04190 -35.24906 -33.85086 -32.96989 -32.54362 -31.92794 -30.34564 -29.35148 -27.46260 -27.34886 -25.26651 -24.98085 -23.06793 -21.36872 -20.66928 -20.06952 -19.37218 -18.31348 -17.22288 -16.74882 -16.40866 -16.21732 -15.85246 -15.17366 -14.97670 -14.77455 -14.41571 -14.12464 -13.74490 -13.36064 -13.30935 -12.88093 -12.73649 -12.63787 -12.49339 -12.44071 -12.36181 -12.09589 -11.94723 -11.82727 -11.66294 -11.35311 -11.25223 -11.04891 -10.81606 -10.30591 -10.25276 -9.93386 -9.61427 -9.36483 -8.76206 -8.66031 -8.23199 -8.11260 -7.95127 -6.28440 -4.37517 1.98064 2.17435 2.79176 2.88922 3.07149 3.12877 3.15939 3.23013 3.24204 3.45182 3.93883 4.24289 4.75608 4.84952 5.02935 5.05540 5.23124 5.25445 5.32922 5.36100 5.37866 5.42428 5.58091 5.65295 5.70915 5.75370 5.86587 5.97272 5.99581 6.08053 6.09409 6.12850 6.27963 6.40255 6.54172 6.57456 6.81588 6.99662 7.06062 7.30076 7.35918 7.49246 7.64765 7.92496 8.04572 8.13641 8.65029 8.82553 9.31013 10.78306 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.007781 B = 0.005824 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3597.590573 B = 4806.200569 C = 7733.932773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.067 3.933 3 C -0.263 4.263 4 C 0.122 3.878 5 C -0.078 4.078 6 C 0.525 3.475 7 O -0.557 6.557 8 N -0.590 5.590 9 C 0.235 3.765 10 C -0.545 4.545 11 H 0.062 0.938 12 C 0.068 3.932 13 N -0.887 5.887 14 Si 0.897 3.103 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.275 1.275 18 C 0.198 3.802 19 C -0.018 4.018 20 C -0.197 4.197 21 C -0.219 4.219 22 C -0.048 4.048 23 O -0.169 6.169 24 N -0.366 5.366 25 C 0.099 3.901 26 N -0.305 5.305 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.141 0.859 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.267 0.733 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.197 0.803 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.915 -0.318 4.046 9.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 C -0.293 4.293 4 C -0.006 4.006 5 C -0.119 4.119 6 C 0.313 3.687 7 O -0.436 6.436 8 N -0.321 5.321 9 C 0.116 3.884 10 C -0.583 4.583 11 H 0.080 0.920 12 C -0.136 4.136 13 N -0.524 5.524 14 Si 0.724 3.276 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.200 1.200 18 C 0.074 3.926 19 C -0.070 4.070 20 C -0.217 4.217 21 C -0.239 4.239 22 C -0.116 4.116 23 O -0.065 6.065 24 N -0.147 5.147 25 C -0.042 4.042 26 N -0.128 5.128 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.159 0.841 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.214 0.786 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.693 -1.732 4.222 9.818 hybrid contribution 0.808 0.540 -0.215 0.996 sum -7.885 -1.192 4.007 8.924 Atomic orbital electron populations 1.20109 0.87125 1.02776 1.02606 1.22161 0.96589 0.90928 1.00118 1.20959 0.90934 0.99469 1.17890 1.20490 0.96272 0.84193 0.99683 1.20296 0.94963 0.99943 0.96726 1.20136 0.80039 0.78252 0.90301 1.90645 1.50822 1.56126 1.46040 1.48262 1.28317 1.47829 1.07699 1.19533 0.89642 0.95921 0.83308 1.21417 1.11540 1.07961 1.17415 0.91992 1.24939 0.97686 0.95477 0.95506 1.69912 1.36673 1.25554 1.20303 0.86576 0.81870 0.81150 0.78000 1.20086 1.21085 1.20048 1.19668 0.99368 0.88319 0.85203 1.23198 0.95841 0.85001 1.02932 1.21664 0.96924 0.97089 1.06043 1.21796 1.00579 0.93877 1.07620 1.23965 0.89235 0.95071 1.03341 1.84081 1.41811 1.15285 1.65291 1.48252 1.05278 1.04178 1.57013 1.21857 0.84197 0.94678 1.03497 1.77188 0.86324 1.22746 1.26578 0.90873 0.90689 0.91346 0.84088 0.86562 0.86575 0.94246 0.94206 0.92302 0.87790 0.88496 0.83519 0.83958 0.78585 0.90820 0.89610 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.45 36.01 0.38 -0.40 16 2 C 0.07 1.09 7.22 -82.40 -0.59 0.50 16 3 C -0.26 -4.47 10.65 -40.02 -0.43 -4.90 16 4 C 0.12 2.15 5.42 -82.27 -0.45 1.71 16 5 C -0.08 -1.37 4.53 -29.03 -0.13 -1.51 16 6 C 0.53 10.29 7.66 -10.99 -0.08 10.21 16 7 O -0.56 -11.92 15.62 5.55 0.09 -11.83 16 8 N -0.59 -11.68 2.44 -176.43 -0.43 -12.11 16 9 C 0.24 5.25 4.97 -5.19 -0.03 5.22 16 10 C -0.54 -13.10 9.31 -34.44 -0.32 -13.42 16 11 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 12 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -23.32 13.29 55.43 0.74 -22.58 16 14 Si 0.90 19.38 29.54 -169.99 -5.02 14.36 16 15 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 16 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 17 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 18 C 0.20 3.57 5.93 -5.19 -0.03 3.53 16 19 C -0.02 -0.32 6.90 -35.63 -0.25 -0.57 16 20 C -0.20 -3.29 10.81 -39.71 -0.43 -3.72 16 21 C -0.22 -3.15 10.91 -39.70 -0.43 -3.58 16 22 C -0.05 -0.67 12.09 29.42 0.36 -0.32 16 23 O -0.17 -2.97 10.65 5.69 0.06 -2.91 16 24 N -0.37 -6.33 4.01 -63.89 -0.26 -6.58 16 25 C 0.10 1.37 11.27 59.85 0.67 2.05 16 26 N -0.30 -5.42 12.58 33.67 0.42 -5.00 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.14 2.16 8.06 -52.48 -0.42 1.74 16 31 H 0.12 1.93 7.40 -51.92 -0.38 1.54 16 32 H 0.12 2.04 6.83 -51.93 -0.35 1.68 16 33 H 0.04 0.90 6.43 -51.93 -0.33 0.57 16 34 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 35 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.10 1.79 7.42 -51.93 -0.39 1.41 16 37 H 0.10 1.70 8.07 -51.93 -0.42 1.28 16 38 H 0.15 2.47 8.06 -52.49 -0.42 2.04 16 39 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.20 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.09 1.18 6.98 -51.92 -0.36 0.82 16 LS Contribution 373.30 15.07 5.63 5.63 Total: -1.00 -30.84 373.30 -6.64 -37.48 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.01 Total: 7.15 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -1.86 Total: -3.59 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.47 Total: -46.28 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.15 Total: -14.74 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.84 -6.64 -37.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568394514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.619 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds