Wall clock time and date at job start Tue Mar 31 2020 12:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39865 * 125.90040 * 2 1 4 4 C 1.35310 * 107.92114 * 180.14152 * 3 2 1 5 5 C 1.50698 * 126.12808 * 179.90462 * 4 3 2 6 6 C 1.50702 * 109.47465 * 84.68612 * 5 4 3 7 7 O 1.21283 * 119.99478 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00430 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99969 * 0.02562 * 8 6 5 10 10 C 1.50703 * 109.46877 * 269.72057 * 9 8 6 11 11 H 1.08005 * 119.99817 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00081 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99848 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00321 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46844 * 60.00490 * 14 12 10 16 16 H 1.48496 * 109.47153 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47045 * 300.00555 * 14 12 10 18 18 C 1.46499 * 120.00036 * 179.72648 * 8 6 5 19 19 C 1.50703 * 109.47126 * 270.27831 * 18 8 6 20 20 C 1.34507 * 125.79214 * 89.99864 * 19 18 8 21 21 C 1.41377 * 106.84473 * 179.97438 * 20 19 18 22 22 C 1.34519 * 106.84169 * 0.02562 * 21 20 19 23 23 O 1.34305 * 108.41620 * 359.73085 * 22 21 20 24 24 N 1.34946 * 107.74844 * 359.63779 * 4 3 2 25 25 C 1.46497 * 126.04330 * 180.20377 * 24 4 3 26 26 N 1.30839 * 125.89780 * 179.73972 * 2 1 3 27 27 H 1.09003 * 109.47149 * 270.23713 * 1 2 3 28 28 H 1.08997 * 109.47012 * 30.23543 * 1 2 3 29 29 H 1.09002 * 109.47281 * 150.23594 * 1 2 3 30 30 H 1.08005 * 126.04153 * 0.02562 * 3 2 1 31 31 H 1.09009 * 109.47290 * 324.68983 * 5 4 3 32 32 H 1.09001 * 109.47203 * 204.68759 * 5 4 3 33 33 H 1.09000 * 109.46803 * 29.71536 * 9 8 6 34 34 H 1.09000 * 109.47214 * 149.72329 * 9 8 6 35 35 H 0.96998 * 119.99944 * 179.97438 * 13 12 10 36 36 H 1.08994 * 109.47173 * 30.28203 * 18 8 6 37 37 H 1.09005 * 109.47077 * 150.28374 * 18 8 6 38 38 H 1.08002 * 126.57754 * 359.96948 * 20 19 18 39 39 H 1.07999 * 126.58322 * 179.97438 * 21 20 19 40 40 H 1.07994 * 125.79431 * 179.97438 * 22 21 20 41 41 H 1.08993 * 109.47109 * 89.99907 * 25 24 4 42 42 H 1.08997 * 109.47483 * 210.00623 * 25 24 4 43 43 H 1.09009 * 109.46807 * 330.00825 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7153 -0.0032 5 6 4.8350 1.5988 -0.0064 6 6 5.1685 2.0001 1.4074 7 8 4.4825 1.6070 2.3271 8 7 6.2294 2.7951 1.6499 9 6 7.0584 3.2695 0.5390 10 6 8.1760 2.2892 0.2919 11 1 8.2601 1.4014 0.9011 12 6 9.0904 2.5252 -0.7126 13 7 8.9877 3.6061 -1.4548 14 14 10.4762 1.3105 -1.0185 15 1 9.9044 -0.0172 -1.3586 16 1 11.3163 1.7913 -2.1446 17 1 11.3095 1.1919 0.2048 18 6 6.5500 3.1900 3.0238 19 6 5.8266 4.4685 3.3607 20 6 4.5981 4.5583 3.9010 21 6 4.3145 5.9356 4.0471 22 6 5.3865 6.6052 3.5867 23 8 6.3015 5.7113 3.1774 24 7 3.6088 -0.6341 0.0030 25 6 4.7898 -1.5009 0.0065 26 7 2.2742 -1.0599 0.0048 27 1 -0.3633 0.0043 1.0277 28 1 -0.3633 0.8878 -0.5175 29 1 -0.3634 -0.8921 -0.5102 30 1 1.9924 2.1598 0.0004 31 1 4.6362 2.4912 -0.6000 32 1 5.6757 1.0553 -0.4376 33 1 6.4468 3.3572 -0.3590 34 1 7.4783 4.2437 0.7893 35 1 9.6312 3.7724 -2.1612 36 1 6.2368 2.4036 3.7104 37 1 7.6249 3.3458 3.1156 38 1 3.9522 3.7360 4.1714 39 1 3.4104 6.3674 4.4502 40 1 5.4948 7.6793 3.5555 41 1 5.0832 -1.7111 1.0350 42 1 4.5561 -2.4356 -0.5030 43 1 5.6092 -1.0005 -0.5099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568394514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:56 Heat of formation + Delta-G solvation = 38.129227 kcal Electronic energy + Delta-G solvation = -26716.079695 eV Core-core repulsion = 22957.273039 eV Total energy + Delta-G solvation = -3758.806656 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.45959 -42.31462 -40.60628 -36.90355 -35.07412 -34.69074 -33.90536 -33.30230 -31.71471 -30.39013 -29.13200 -28.79730 -26.59448 -26.19525 -24.88639 -22.59869 -21.99352 -21.33468 -20.68799 -19.74868 -18.77526 -18.34133 -17.85136 -17.69991 -17.20232 -16.55104 -16.46560 -16.24503 -16.02037 -15.41270 -14.99015 -14.59515 -14.40292 -14.34834 -14.24351 -13.99896 -13.81533 -13.71222 -13.56537 -13.45767 -13.23795 -13.11373 -12.93477 -12.86998 -12.70732 -12.66784 -12.47501 -12.07003 -11.76771 -11.52061 -11.00282 -10.81985 -10.58063 -10.03325 -9.69678 -9.43391 -9.37705 -8.19502 -6.34522 0.70172 0.87659 1.45140 1.47106 1.53598 1.57698 1.62803 1.69170 1.82297 2.16869 2.38330 2.49844 3.12076 3.50449 3.63143 3.72759 3.84056 4.05815 4.15794 4.17992 4.23975 4.31112 4.39151 4.45656 4.51690 4.55797 4.65574 4.73128 4.84322 4.85584 4.92278 4.96081 5.04714 5.08388 5.17926 5.22641 5.30247 5.58543 5.63388 5.75171 5.81708 6.03654 6.06048 6.24342 6.48582 6.77747 6.78293 7.19989 7.38773 8.86490 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.007781 B = 0.005824 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3597.590573 B = 4806.200569 C = 7733.932773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.063 3.937 3 C -0.276 4.276 4 C 0.106 3.894 5 C -0.069 4.069 6 C 0.526 3.474 7 O -0.575 6.575 8 N -0.591 5.591 9 C 0.253 3.747 10 C -0.547 4.547 11 H 0.061 0.939 12 C 0.026 3.974 13 N -0.919 5.919 14 Si 0.954 3.046 15 H -0.265 1.265 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.198 3.802 19 C -0.045 4.045 20 C -0.200 4.200 21 C -0.225 4.225 22 C -0.039 4.039 23 O -0.192 6.192 24 N -0.375 5.375 25 C 0.093 3.907 26 N -0.329 5.329 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.152 0.848 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.034 0.966 34 H 0.016 0.984 35 H 0.268 0.732 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.141 0.859 39 H 0.173 0.827 40 H 0.240 0.760 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.691 -0.138 4.187 10.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.102 4.102 3 C -0.306 4.306 4 C -0.022 4.022 5 C -0.110 4.110 6 C 0.315 3.685 7 O -0.456 6.456 8 N -0.321 5.321 9 C 0.132 3.868 10 C -0.585 4.585 11 H 0.079 0.921 12 C -0.175 4.175 13 N -0.557 5.557 14 Si 0.780 3.220 15 H -0.190 1.190 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.075 3.925 19 C -0.096 4.096 20 C -0.220 4.220 21 C -0.244 4.244 22 C -0.107 4.107 23 O -0.088 6.088 24 N -0.157 5.157 25 C -0.048 4.048 26 N -0.152 5.152 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.170 0.830 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.052 0.948 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.113 0.887 38 H 0.159 0.841 39 H 0.190 0.810 40 H 0.256 0.744 41 H 0.091 0.909 42 H 0.124 0.876 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.473 -1.570 4.380 10.554 hybrid contribution 0.996 0.558 -0.193 1.158 sum -8.477 -1.012 4.186 9.508 Atomic orbital electron populations 1.20275 0.84047 1.04370 1.03728 1.22865 0.98565 0.90099 0.98653 1.21279 0.91007 1.00442 1.17835 1.20575 0.96481 0.84677 1.00517 1.20202 0.95143 1.00269 0.95417 1.20405 0.79522 0.77711 0.90910 1.90628 1.51319 1.56808 1.46858 1.48215 1.28108 1.47877 1.07904 1.19154 0.89385 0.94480 0.83753 1.21617 1.11869 1.07966 1.17089 0.92101 1.25620 0.99730 0.96836 0.95356 1.70013 1.37626 1.27132 1.20950 0.85663 0.79199 0.79549 0.77633 1.19018 1.21208 1.19938 1.19676 0.99429 0.89142 0.84281 1.23024 0.96517 0.85089 1.04979 1.21790 0.96386 0.98377 1.05466 1.22137 1.01909 0.92619 1.07722 1.24876 0.88163 0.96419 1.01197 1.84065 1.43147 1.15615 1.65997 1.48535 1.05871 1.04333 1.56965 1.22062 0.83586 0.95283 1.03858 1.77147 0.86750 1.23747 1.27598 0.89839 0.88574 0.90306 0.82980 0.85868 0.86709 0.94808 0.96557 0.92338 0.87445 0.88740 0.84127 0.80989 0.74387 0.90886 0.87635 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 10.45 71.24 0.74 -0.63 16 2 C 0.06 1.98 7.22 43.10 0.31 2.30 16 3 C -0.28 -9.20 10.65 21.99 0.23 -8.96 16 4 C 0.11 3.73 5.42 41.40 0.22 3.95 16 5 C -0.07 -2.45 4.53 29.10 0.13 -2.32 16 6 C 0.53 20.80 7.66 87.66 0.67 21.47 16 7 O -0.58 -24.81 15.62 -3.04 -0.05 -24.86 16 8 N -0.59 -23.76 2.44 -830.48 -2.03 -25.79 16 9 C 0.25 11.48 4.97 85.63 0.43 11.91 16 10 C -0.55 -26.40 9.31 25.60 0.24 -26.16 16 11 H 0.06 2.91 7.81 -2.91 -0.02 2.89 16 12 C 0.03 1.27 5.46 84.65 0.46 1.73 16 13 N -0.92 -48.56 13.29 21.45 0.28 -48.28 16 14 Si 0.95 39.35 29.54 68.60 2.03 41.38 16 15 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 16 H -0.29 -11.81 7.11 99.48 0.71 -11.11 16 17 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 18 C 0.20 7.28 5.93 85.63 0.51 7.78 16 19 C -0.05 -1.61 6.90 24.83 0.17 -1.43 16 20 C -0.20 -6.58 10.81 22.19 0.24 -6.34 16 21 C -0.23 -5.99 10.91 22.19 0.24 -5.75 16 22 C -0.04 -1.02 12.09 66.97 0.81 -0.21 16 23 O -0.19 -6.64 10.65 -2.54 -0.03 -6.67 16 24 N -0.38 -12.85 4.01 -356.05 -1.43 -14.28 16 25 C 0.09 2.51 11.27 127.77 1.44 3.95 16 26 N -0.33 -11.46 12.58 -47.38 -0.60 -12.06 16 27 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.15 4.53 8.06 -2.91 -0.02 4.51 16 31 H 0.12 4.12 7.40 -2.38 -0.02 4.10 16 32 H 0.11 4.05 6.83 -2.39 -0.02 4.04 16 33 H 0.03 1.57 6.43 -2.39 -0.02 1.56 16 34 H 0.02 0.82 8.07 -2.39 -0.02 0.80 16 35 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 36 H 0.11 3.80 7.42 -2.39 -0.02 3.78 16 37 H 0.09 3.43 8.07 -2.38 -0.02 3.41 16 38 H 0.14 4.73 8.06 -2.91 -0.02 4.71 16 39 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.24 3.79 8.06 -2.91 -0.02 3.77 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.10 2.47 6.98 -2.38 -0.02 2.45 16 Total: -1.00 -65.55 373.30 6.06 -59.50 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 1.01 Total: 29.76 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 6.85 Total: 1.29 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -3.77 Total: -100.40 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.07 Total: -31.52 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -65.55 6.06 -59.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568394514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.626 kcal (2) G-P(sol) polarization free energy of solvation -65.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds