Wall clock time and date at job start Tue Mar 31 2020 12:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46439 * 2 1 4 4 O 1.42902 * 109.46768 * 299.96991 * 3 2 1 5 5 C 1.53044 * 109.45742 * 119.97266 * 2 1 3 6 6 C 1.53191 * 109.31160 * 58.63766 * 5 2 1 7 7 N 1.46925 * 108.77732 * 54.63478 * 6 5 2 8 8 S 1.65604 * 120.62896 * 126.36445 * 7 6 5 9 9 O 1.42098 * 104.28076 * 333.93235 * 8 7 6 10 10 O 1.42092 * 104.27907 * 206.07057 * 8 7 6 11 11 C 1.81403 * 104.44798 * 90.00268 * 8 7 6 12 12 C 1.53002 * 109.47177 * 172.45119 * 11 8 7 13 13 C 1.50701 * 115.54819 * 40.16907 * 12 11 8 14 14 H 1.07991 * 119.99980 * 269.28913 * 13 12 11 15 15 C 1.37878 * 119.99726 * 89.29463 * 13 12 11 16 16 N 1.31510 * 120.00217 * 352.02800 * 15 13 12 17 17 Si 1.86805 * 119.99732 * 172.03678 * 15 13 12 18 18 H 1.48498 * 109.47211 * 89.99619 * 17 15 13 19 19 H 1.48498 * 109.46865 * 209.99751 * 17 15 13 20 20 H 1.48498 * 109.46909 * 329.99534 * 17 15 13 21 21 C 1.52998 * 117.49588 * 254.46201 * 12 11 8 22 22 C 1.53000 * 117.49641 * 185.83761 * 12 11 8 23 23 C 1.46916 * 118.74026 * 306.64187 * 7 6 5 24 24 C 1.52770 * 109.00678 * 53.30740 * 23 7 6 25 25 H 1.08999 * 109.46950 * 300.03138 * 1 2 3 26 26 H 1.09004 * 109.46849 * 60.02729 * 1 2 3 27 27 H 1.09000 * 109.47541 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47308 * 59.97087 * 3 2 1 29 29 H 1.09000 * 109.47404 * 179.97438 * 3 2 1 30 30 H 0.96704 * 113.99757 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.49644 * 298.68989 * 5 2 1 32 32 H 1.08997 * 109.49997 * 178.58939 * 5 2 1 33 33 H 1.08997 * 109.58726 * 294.84591 * 6 5 2 34 34 H 1.09005 * 109.58410 * 174.42713 * 6 5 2 35 35 H 1.09005 * 109.47273 * 52.44961 * 11 8 7 36 36 H 1.09001 * 109.46937 * 292.45437 * 11 8 7 37 37 H 0.96999 * 119.99871 * 185.02122 * 16 15 13 38 38 H 1.09003 * 117.50270 * 359.97438 * 21 12 11 39 39 H 1.09003 * 117.49363 * 145.02572 * 21 12 11 40 40 H 1.09003 * 117.49981 * 214.97394 * 22 12 11 41 41 H 1.09000 * 117.49991 * 0.02562 * 22 12 11 42 42 H 1.09000 * 109.58792 * 173.14233 * 23 7 6 43 43 H 1.08995 * 109.58923 * 293.57019 * 23 7 6 44 44 H 1.09000 * 109.56204 * 185.55470 * 24 23 7 45 45 H 1.09000 * 109.38539 * 65.51820 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 8 1.5640 2.1158 -1.1672 5 6 2.0398 -0.7209 1.2500 6 6 1.4991 -2.1542 1.2642 7 7 1.8618 -2.8090 -0.0001 8 16 2.6649 -4.2572 -0.0001 9 8 3.3645 -4.2701 1.2367 10 8 3.3637 -4.2704 -1.2372 11 6 1.3481 -5.5050 0.0004 12 6 1.9614 -6.8938 -0.1891 13 6 3.2486 -7.1428 0.5540 14 1 4.1954 -6.9282 0.0809 15 6 3.2174 -7.6446 1.8378 16 7 2.0708 -7.7587 2.4716 17 14 4.8041 -8.1622 2.6771 18 1 5.3773 -7.0044 3.4093 19 1 4.5219 -9.2624 3.6337 20 1 5.7742 -8.6313 1.6553 21 6 1.7947 -7.5590 -1.5568 22 6 1.0013 -8.0735 -0.3539 23 6 1.5038 -2.1515 -1.2642 24 6 2.0396 -0.7209 -1.2501 25 1 -0.3633 0.5143 0.8897 26 1 -0.3633 0.5134 -0.8903 27 1 -0.3634 -1.0276 0.0005 28 1 1.6760 1.9565 0.8897 29 1 3.1298 1.4427 0.0005 30 1 1.8489 3.0376 -1.2331 31 1 1.6959 -0.1936 2.1398 32 1 3.1295 -0.7433 1.2382 33 1 0.4142 -2.1344 1.3675 34 1 1.9377 -2.7019 2.0984 35 1 0.6533 -5.3004 -0.8142 36 1 0.8147 -5.4698 0.9503 37 1 2.0554 -8.0426 3.3990 38 1 1.2477 -7.0074 -2.3215 39 1 2.6162 -8.1769 -1.9194 40 1 1.3008 -9.0300 0.0747 41 1 -0.0673 -7.8602 -0.3278 42 1 1.9455 -2.6974 -2.0979 43 1 0.4193 -2.1315 -1.3714 44 1 1.6955 -0.1935 -2.1398 45 1 3.1293 -0.7427 -1.2387 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570529738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:19 Heat of formation + Delta-G solvation = -105.454731 kcal Electronic energy + Delta-G solvation = -26564.783158 eV Core-core repulsion = 22902.901435 eV Total energy + Delta-G solvation = -3661.881724 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.59448 -36.71848 -36.60158 -36.15514 -34.89132 -33.37152 -32.02670 -31.02109 -28.18309 -27.42984 -26.70384 -25.42827 -23.32448 -22.36127 -21.16399 -19.61742 -19.01384 -17.78333 -17.49223 -16.92854 -16.36613 -15.51995 -15.25438 -15.04243 -14.82510 -14.62359 -14.35814 -14.15260 -13.84222 -13.67740 -13.25430 -13.01981 -12.64904 -12.27563 -12.17315 -11.94422 -11.86067 -11.72423 -11.19560 -11.10088 -11.04969 -10.97214 -10.94605 -10.85037 -10.77552 -10.50280 -10.35243 -10.32965 -10.27264 -10.07137 -10.03945 -9.68519 -8.94894 -8.64575 -8.49290 -8.06261 -6.14642 -4.28950 1.18414 3.33169 3.40058 3.43496 3.50920 4.02689 4.40267 4.60199 4.68265 4.76800 4.88619 4.99854 5.08099 5.15592 5.18918 5.30238 5.31233 5.38766 5.42923 5.48101 5.63915 5.66932 5.75423 5.79910 5.87618 5.92565 6.00126 6.02544 6.12234 6.12941 6.26959 6.32258 6.37763 6.42238 6.52192 6.63964 6.72947 6.96176 7.02552 7.22055 7.42686 7.43744 7.79270 8.20530 8.79257 9.47298 10.92635 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.004212 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.474095 B = 6645.634152 C = 7130.504735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 C 0.086 3.914 4 O -0.569 6.569 5 C -0.121 4.121 6 C 0.119 3.881 7 N -1.014 6.014 8 S 2.623 3.377 9 O -0.943 6.943 10 O -0.972 6.972 11 C -0.561 4.561 12 C 0.048 3.952 13 C -0.542 4.542 14 H 0.068 0.932 15 C 0.096 3.904 16 N -0.867 5.867 17 Si 0.889 3.111 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.269 1.269 21 C -0.205 4.205 22 C -0.140 4.140 23 C 0.116 3.884 24 C -0.115 4.115 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.375 0.625 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.264 0.736 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.037 16.634 -3.490 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.058 4.058 3 C 0.008 3.992 4 O -0.374 6.374 5 C -0.160 4.160 6 C -0.007 4.007 7 N -0.850 5.850 8 S 2.721 3.279 9 O -0.933 6.933 10 O -0.962 6.962 11 C -0.693 4.693 12 C 0.046 3.954 13 C -0.579 4.579 14 H 0.086 0.914 15 C -0.111 4.111 16 N -0.501 5.501 17 Si 0.715 3.285 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.242 4.242 22 C -0.179 4.179 23 C -0.010 4.010 24 C -0.154 4.154 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.221 0.779 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.143 0.857 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.472 15.851 -3.433 16.824 hybrid contribution 0.230 0.153 0.760 0.809 sum -4.243 16.004 -2.672 16.771 Atomic orbital electron populations 1.21892 0.94011 1.02110 1.01817 1.20522 0.96551 0.92627 0.96119 1.22244 0.97170 0.92725 0.87062 1.86479 1.77553 1.28690 1.44679 1.21876 1.01534 0.95867 0.96752 1.21357 0.99835 0.93182 0.86277 1.58256 1.77364 1.38604 1.10763 1.04712 0.76164 0.72907 0.74111 1.93510 1.69430 1.85266 1.45113 1.93457 1.70321 1.86181 1.46286 1.30047 1.16264 1.14325 1.08645 1.18188 0.96299 0.86518 0.94376 1.20573 0.90389 1.47276 0.99658 0.91380 1.24902 0.96338 0.93022 0.96850 1.69968 1.25005 1.44563 1.10550 0.86613 0.83691 0.78567 0.79598 1.19648 1.20951 1.19366 1.23151 1.03269 1.06176 0.91652 1.22489 0.94923 1.00092 1.00411 1.21322 0.99782 0.93841 0.86041 1.21746 1.00990 0.95030 0.97632 0.93116 0.91997 0.91882 0.93799 0.93722 0.77879 0.90931 0.91139 0.91645 0.88444 0.88646 0.85706 0.92581 0.91336 0.89705 0.89541 0.91689 0.88976 0.91834 0.90261 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 7.57 37.16 0.28 -1.15 16 2 C -0.06 -0.63 0.60 -154.47 -0.09 -0.73 16 3 C 0.09 0.79 5.91 37.16 0.22 1.01 16 4 O -0.57 -5.13 12.29 -35.23 -0.43 -5.56 16 5 C -0.12 -1.42 4.91 -26.61 -0.13 -1.55 16 6 C 0.12 1.66 5.96 -3.71 -0.02 1.64 16 7 N -1.01 -16.37 3.23 -113.77 -0.37 -16.73 16 8 S 2.62 56.09 4.60 -107.50 -0.49 55.60 16 9 O -0.94 -23.34 15.82 -57.54 -0.91 -24.25 16 10 O -0.97 -22.72 16.58 -57.54 -0.95 -23.67 16 11 C -0.56 -11.97 6.29 37.16 0.23 -11.74 16 12 C 0.05 1.20 1.71 -155.66 -0.27 0.93 16 13 C -0.54 -15.07 6.99 -34.44 -0.24 -15.32 16 14 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 15 C 0.10 2.67 5.35 -17.82 -0.10 2.57 16 16 N -0.87 -24.14 12.79 55.43 0.71 -23.44 16 17 Si 0.89 21.85 29.55 -169.99 -5.02 16.83 16 18 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.21 -4.54 9.88 -26.73 -0.26 -4.81 16 22 C -0.14 -3.25 9.26 -26.73 -0.25 -3.50 16 23 C 0.12 1.60 5.94 -3.93 -0.02 1.58 16 24 C -0.12 -1.43 4.76 -26.83 -0.13 -1.56 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.65 7.68 -51.93 -0.40 0.25 16 27 H 0.06 0.66 4.99 -51.93 -0.26 0.40 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.37 1.73 9.12 45.56 0.42 2.15 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.77 6.69 -51.93 -0.35 0.42 16 34 H 0.10 1.50 6.86 -51.93 -0.36 1.15 16 35 H 0.09 1.71 7.95 -51.92 -0.41 1.30 16 36 H 0.12 2.68 8.14 -51.92 -0.42 2.26 16 37 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 38 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 39 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 40 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 41 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.09 1.35 6.85 -51.93 -0.36 0.99 16 43 H 0.06 0.74 6.70 -51.93 -0.35 0.40 16 44 H 0.08 0.93 7.64 -51.93 -0.40 0.53 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -33.53 361.42 -9.45 -42.99 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.65 Total: 5.43 kcal Atomic # 6 Polarization: -31.85 SS G_CDS: -0.78 Total: -32.63 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.34 Total: -40.17 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -2.30 Total: -53.48 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 56.09 SS G_CDS: -0.49 Total: 55.60 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.53 -9.45 -42.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570529738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.470 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds