Wall clock time and date at job start Tue Mar 31 2020 12:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46439 * 2 1 4 4 O 1.42902 * 109.46768 * 299.96991 * 3 2 1 5 5 C 1.53044 * 109.45742 * 119.97266 * 2 1 3 6 6 C 1.53191 * 109.31160 * 58.63766 * 5 2 1 7 7 N 1.46925 * 108.77732 * 54.63478 * 6 5 2 8 8 S 1.65604 * 120.62896 * 126.36445 * 7 6 5 9 9 O 1.42098 * 104.28076 * 333.93235 * 8 7 6 10 10 O 1.42092 * 104.27907 * 206.07057 * 8 7 6 11 11 C 1.81403 * 104.44798 * 90.00268 * 8 7 6 12 12 C 1.53002 * 109.47177 * 172.45119 * 11 8 7 13 13 C 1.50701 * 115.54819 * 40.16907 * 12 11 8 14 14 H 1.07991 * 119.99980 * 269.28913 * 13 12 11 15 15 C 1.37878 * 119.99726 * 89.29463 * 13 12 11 16 16 N 1.31510 * 120.00217 * 352.02800 * 15 13 12 17 17 Si 1.86805 * 119.99732 * 172.03678 * 15 13 12 18 18 H 1.48498 * 109.47211 * 89.99619 * 17 15 13 19 19 H 1.48498 * 109.46865 * 209.99751 * 17 15 13 20 20 H 1.48498 * 109.46909 * 329.99534 * 17 15 13 21 21 C 1.52998 * 117.49588 * 254.46201 * 12 11 8 22 22 C 1.53000 * 117.49641 * 185.83761 * 12 11 8 23 23 C 1.46916 * 118.74026 * 306.64187 * 7 6 5 24 24 C 1.52770 * 109.00678 * 53.30740 * 23 7 6 25 25 H 1.08999 * 109.46950 * 300.03138 * 1 2 3 26 26 H 1.09004 * 109.46849 * 60.02729 * 1 2 3 27 27 H 1.09000 * 109.47541 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47308 * 59.97087 * 3 2 1 29 29 H 1.09000 * 109.47404 * 179.97438 * 3 2 1 30 30 H 0.96704 * 113.99757 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.49644 * 298.68989 * 5 2 1 32 32 H 1.08997 * 109.49997 * 178.58939 * 5 2 1 33 33 H 1.08997 * 109.58726 * 294.84591 * 6 5 2 34 34 H 1.09005 * 109.58410 * 174.42713 * 6 5 2 35 35 H 1.09005 * 109.47273 * 52.44961 * 11 8 7 36 36 H 1.09001 * 109.46937 * 292.45437 * 11 8 7 37 37 H 0.96999 * 119.99871 * 185.02122 * 16 15 13 38 38 H 1.09003 * 117.50270 * 359.97438 * 21 12 11 39 39 H 1.09003 * 117.49363 * 145.02572 * 21 12 11 40 40 H 1.09003 * 117.49981 * 214.97394 * 22 12 11 41 41 H 1.09000 * 117.49991 * 0.02562 * 22 12 11 42 42 H 1.09000 * 109.58792 * 173.14233 * 23 7 6 43 43 H 1.08995 * 109.58923 * 293.57019 * 23 7 6 44 44 H 1.09000 * 109.56204 * 185.55470 * 24 23 7 45 45 H 1.09000 * 109.38539 * 65.51820 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 8 1.5640 2.1158 -1.1672 5 6 2.0398 -0.7209 1.2500 6 6 1.4991 -2.1542 1.2642 7 7 1.8618 -2.8090 -0.0001 8 16 2.6649 -4.2572 -0.0001 9 8 3.3645 -4.2701 1.2367 10 8 3.3637 -4.2704 -1.2372 11 6 1.3481 -5.5050 0.0004 12 6 1.9614 -6.8938 -0.1891 13 6 3.2486 -7.1428 0.5540 14 1 4.1954 -6.9282 0.0809 15 6 3.2174 -7.6446 1.8378 16 7 2.0708 -7.7587 2.4716 17 14 4.8041 -8.1622 2.6771 18 1 5.3773 -7.0044 3.4093 19 1 4.5219 -9.2624 3.6337 20 1 5.7742 -8.6313 1.6553 21 6 1.7947 -7.5590 -1.5568 22 6 1.0013 -8.0735 -0.3539 23 6 1.5038 -2.1515 -1.2642 24 6 2.0396 -0.7209 -1.2501 25 1 -0.3633 0.5143 0.8897 26 1 -0.3633 0.5134 -0.8903 27 1 -0.3634 -1.0276 0.0005 28 1 1.6760 1.9565 0.8897 29 1 3.1298 1.4427 0.0005 30 1 1.8489 3.0376 -1.2331 31 1 1.6959 -0.1936 2.1398 32 1 3.1295 -0.7433 1.2382 33 1 0.4142 -2.1344 1.3675 34 1 1.9377 -2.7019 2.0984 35 1 0.6533 -5.3004 -0.8142 36 1 0.8147 -5.4698 0.9503 37 1 2.0554 -8.0426 3.3990 38 1 1.2477 -7.0074 -2.3215 39 1 2.6162 -8.1769 -1.9194 40 1 1.3008 -9.0300 0.0747 41 1 -0.0673 -7.8602 -0.3278 42 1 1.9455 -2.6974 -2.0979 43 1 0.4193 -2.1315 -1.3714 44 1 1.6955 -0.1935 -2.1398 45 1 3.1293 -0.7427 -1.2387 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570529738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:18 Heat of formation + Delta-G solvation = -130.119306 kcal Electronic energy + Delta-G solvation = -26565.852695 eV Core-core repulsion = 22902.901435 eV Total energy + Delta-G solvation = -3662.951260 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.53355 -38.54800 -37.92995 -37.41296 -36.66597 -34.39219 -34.09864 -32.06865 -29.89452 -28.38010 -27.61856 -27.37020 -24.36969 -23.38762 -22.95986 -21.42354 -20.33646 -19.16225 -18.40097 -18.26634 -18.05438 -16.99881 -16.89053 -16.54228 -16.02083 -15.79733 -15.63053 -15.47659 -15.22202 -14.96113 -14.82102 -14.11419 -13.93047 -13.73824 -13.53162 -13.43540 -13.08823 -12.98971 -12.90865 -12.84094 -12.82794 -12.57061 -12.42826 -12.20223 -12.08399 -12.07386 -11.89071 -11.68205 -11.55815 -11.28007 -11.24178 -10.87705 -10.75183 -10.51947 -10.06945 -9.69572 -8.24266 -6.41936 -0.46016 1.34326 1.39320 1.45378 2.05284 2.37794 3.03731 3.12088 3.31445 3.35312 3.50508 3.68177 3.77975 3.97141 4.07956 4.18210 4.23425 4.31541 4.43891 4.51762 4.54955 4.58923 4.59671 4.65807 4.73425 4.76876 4.83780 4.85049 4.91655 4.97545 4.98741 5.09939 5.16182 5.18797 5.25861 5.36669 5.37554 5.40980 5.61062 5.61831 5.66219 5.79999 6.19199 6.66882 6.99143 7.35006 8.82528 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.004212 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.474095 B = 6645.634152 C = 7130.504735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.059 4.059 3 C 0.089 3.911 4 O -0.583 6.583 5 C -0.119 4.119 6 C 0.110 3.890 7 N -1.005 6.005 8 S 2.630 3.370 9 O -0.988 6.988 10 O -1.000 7.000 11 C -0.555 4.555 12 C 0.011 3.989 13 C -0.558 4.558 14 H 0.045 0.955 15 C 0.057 3.943 16 N -0.883 5.883 17 Si 0.926 3.074 18 H -0.278 1.278 19 H -0.267 1.267 20 H -0.267 1.267 21 C -0.191 4.191 22 C -0.137 4.137 23 C 0.108 3.892 24 C -0.113 4.113 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.394 0.606 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.121 0.879 37 H 0.267 0.733 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.791 18.304 -3.852 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.059 4.059 3 C 0.011 3.989 4 O -0.391 6.391 5 C -0.158 4.158 6 C -0.015 4.015 7 N -0.844 5.844 8 S 2.729 3.271 9 O -0.978 6.978 10 O -0.991 6.991 11 C -0.687 4.687 12 C 0.009 3.991 13 C -0.595 4.595 14 H 0.063 0.937 15 C -0.148 4.148 16 N -0.518 5.518 17 Si 0.751 3.249 18 H -0.204 1.204 19 H -0.191 1.191 20 H -0.191 1.191 21 C -0.228 4.228 22 C -0.176 4.176 23 C -0.016 4.016 24 C -0.152 4.152 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.243 0.757 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.139 0.861 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.213 17.521 -3.801 18.974 hybrid contribution 0.759 -0.291 0.814 1.150 sum -5.453 17.230 -2.987 18.318 Atomic orbital electron populations 1.21850 0.92939 1.02125 1.02468 1.20525 0.97329 0.93520 0.94518 1.22152 0.97022 0.91796 0.87922 1.86420 1.77753 1.30355 1.44600 1.21877 1.00571 0.94738 0.98631 1.21629 1.01521 0.93948 0.84413 1.57825 1.77052 1.36894 1.12634 1.04134 0.76416 0.73895 0.72662 1.93447 1.71278 1.86293 1.46754 1.93409 1.71672 1.86960 1.47027 1.29920 1.16532 1.12368 1.09909 1.18351 0.95978 0.88589 0.96157 1.20710 0.91098 1.47464 1.00238 0.93678 1.25447 0.98602 0.93284 0.97431 1.69997 1.25846 1.45170 1.10790 0.86036 0.81289 0.78444 0.79128 1.20400 1.19137 1.19128 1.23226 1.02914 1.05249 0.91439 1.22427 0.95866 0.98479 1.00788 1.21595 1.01530 0.94168 0.84343 1.21733 0.99896 0.94406 0.99174 0.91747 0.92107 0.92115 0.91995 0.93986 0.75671 0.88169 0.92770 0.88804 0.90534 0.84922 0.86085 0.92340 0.88097 0.90276 0.91729 0.89522 0.90140 0.88926 0.89246 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 7.57 71.98 0.54 -1.76 16 2 C -0.06 -1.14 0.60 -52.16 -0.03 -1.17 16 3 C 0.09 1.39 5.91 71.98 0.43 1.82 16 4 O -0.58 -8.87 12.29 -148.98 -1.83 -10.70 16 5 C -0.12 -2.58 4.91 30.67 0.15 -2.43 16 6 C 0.11 2.92 5.96 86.36 0.52 3.43 16 7 N -1.01 -31.58 3.23 -513.86 -1.66 -33.23 16 8 S 2.63 113.47 4.60 -56.49 -0.26 113.21 16 9 O -0.99 -50.54 15.82 -127.65 -2.02 -52.56 16 10 O -1.00 -47.49 16.58 -127.65 -2.12 -49.61 16 11 C -0.55 -23.16 6.29 71.98 0.45 -22.71 16 12 C 0.01 0.55 1.71 -52.93 -0.09 0.46 16 13 C -0.56 -31.66 6.99 25.60 0.18 -31.49 16 14 H 0.05 2.69 7.83 -2.92 -0.02 2.66 16 15 C 0.06 3.23 5.35 84.66 0.45 3.68 16 16 N -0.88 -49.57 12.79 21.45 0.27 -49.29 16 17 Si 0.93 45.23 29.55 68.60 2.03 47.26 16 18 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 21 C -0.19 -8.20 9.88 30.60 0.30 -7.90 16 22 C -0.14 -6.21 9.26 30.60 0.28 -5.93 16 23 C 0.11 2.81 5.94 86.22 0.51 3.33 16 24 C -0.11 -2.64 4.76 30.53 0.15 -2.49 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 1.06 7.68 -2.39 -0.02 1.04 16 27 H 0.06 1.04 4.99 -2.39 -0.01 1.03 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.39 2.55 9.12 -74.05 -0.68 1.88 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.96 6.69 -2.39 -0.02 1.95 16 34 H 0.08 2.37 6.86 -2.38 -0.02 2.36 16 35 H 0.13 4.40 7.95 -2.39 -0.02 4.38 16 36 H 0.12 5.12 8.14 -2.39 -0.02 5.10 16 37 H 0.27 14.23 8.32 -92.71 -0.77 13.45 16 38 H 0.10 3.64 8.09 -2.39 -0.02 3.62 16 39 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 40 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 42 H 0.08 2.29 6.85 -2.39 -0.02 2.27 16 43 H 0.09 1.89 6.70 -2.39 -0.02 1.87 16 44 H 0.09 1.91 7.64 -2.39 -0.02 1.89 16 45 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -73.29 361.42 -1.44 -74.72 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.31 Total: 23.36 kcal Atomic # 6 Polarization: -66.99 SS G_CDS: 3.84 Total: -63.15 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -1.38 Total: -82.53 kcal Atomic # 8 Polarization: -106.91 SS G_CDS: -5.97 Total: -112.87 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 113.47 SS G_CDS: -0.26 Total: 113.21 kcal Total: -73.29 -1.44 -74.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570529738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.397 kcal (2) G-P(sol) polarization free energy of solvation -73.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds