Wall clock time and date at job start Tue Mar 31 2020 11:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42892 * 113.99890 * 2 1 4 4 C 1.52999 * 109.47243 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47430 * 65.00281 * 4 3 2 6 6 C 1.37100 * 119.99937 * 264.55653 * 5 4 3 7 7 H 1.07992 * 120.00295 * 145.64992 * 6 5 4 8 8 C 1.38958 * 119.99574 * 325.64701 * 6 5 4 9 9 N 1.31407 * 120.00186 * 338.15808 * 8 6 5 10 10 Si 1.86803 * 119.99630 * 158.16189 * 8 6 5 11 11 H 1.48506 * 109.47050 * 89.99770 * 10 8 6 12 12 H 1.48501 * 109.46944 * 209.99663 * 10 8 6 13 13 H 1.48495 * 109.46925 * 329.99743 * 10 8 6 14 14 C 1.34773 * 120.00053 * 84.55160 * 5 4 3 15 15 O 1.21292 * 119.99758 * 359.97438 * 14 5 4 16 16 C 1.50699 * 119.99887 * 180.02562 * 14 5 4 17 17 C 1.50701 * 109.46955 * 179.97438 * 16 14 5 18 18 C 1.35108 * 125.68709 * 125.57815 * 17 16 14 19 19 N 1.36834 * 107.18086 * 180.02562 * 18 17 16 20 20 C 1.36484 * 132.57249 * 179.35196 * 19 18 17 21 21 C 1.34949 * 120.60823 * 180.02562 * 20 19 18 22 22 C 1.40468 * 120.30340 * 359.97438 * 21 20 19 23 23 C 1.36020 * 119.69360 * 0.02562 * 22 21 20 24 24 C 1.50707 * 120.33698 * 179.97438 * 23 22 21 25 25 C 1.37081 * 106.99619 * 359.59473 * 19 18 17 26 26 N 1.32553 * 108.04040 * 0.11066 * 25 19 18 27 27 H 1.08994 * 109.47026 * 299.99605 * 1 2 3 28 28 H 1.08995 * 109.47183 * 60.00058 * 1 2 3 29 29 H 1.09004 * 109.46753 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46928 * 60.00367 * 3 2 1 31 31 H 1.09000 * 109.47618 * 300.00408 * 3 2 1 32 32 H 1.09005 * 109.47215 * 304.99971 * 4 3 2 33 33 H 1.09000 * 109.47582 * 185.00197 * 4 3 2 34 34 H 0.97000 * 120.00220 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47064 * 60.00074 * 16 14 5 36 36 H 1.09002 * 109.47106 * 299.99637 * 16 14 5 37 37 H 1.08004 * 126.40916 * 359.40109 * 18 17 16 38 38 H 1.07995 * 119.69508 * 359.97438 * 20 19 18 39 39 H 1.08004 * 119.84752 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.15354 * 180.02562 * 22 21 20 41 41 H 1.08991 * 109.47327 * 89.99899 * 24 23 22 42 42 H 1.08996 * 109.46767 * 329.99478 * 24 23 22 43 43 H 1.09001 * 109.46765 * 209.99793 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.2045 -0.7863 -1.3053 7 1 3.9850 -1.3364 -2.2083 8 6 4.7190 -1.4474 -0.1966 9 7 5.3776 -0.7764 0.7214 10 14 4.4743 -3.2900 -0.0114 11 1 5.6055 -4.0066 -0.6535 12 1 4.4215 -3.6398 1.4309 13 1 3.2015 -3.6884 -0.6643 14 6 4.1558 1.3218 -2.3530 15 8 3.9528 2.5167 -2.3066 16 6 4.6082 0.6837 -3.6411 17 6 4.7313 1.7401 -4.7088 18 6 5.8317 1.9829 -5.4542 19 7 5.5278 3.0155 -6.2991 20 6 6.2522 3.6742 -7.2499 21 6 5.7005 4.6814 -7.9588 22 6 4.3694 5.0653 -7.7266 23 6 3.6362 4.4172 -6.7819 24 6 2.2070 4.8175 -6.5205 25 6 4.2283 3.3711 -6.0461 26 7 3.7674 2.5845 -5.0838 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5682 0.8410 33 1 3.9785 2.1765 0.0890 34 1 5.7371 -1.2380 1.4951 35 1 3.8782 -0.0636 -3.9524 36 1 5.5758 0.2054 -3.4894 37 1 6.7777 1.4661 -5.3879 38 1 7.2766 3.3874 -7.4362 39 1 6.2849 5.1940 -8.7086 40 1 3.9302 5.8714 -8.2956 41 1 1.5443 4.2412 -7.1660 42 1 2.0835 5.8802 -6.7290 43 1 1.9596 4.6208 -5.4774 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581710598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:10 Heat of formation + Delta-G solvation = -2.520302 kcal Electronic energy + Delta-G solvation = -26562.005561 eV Core-core repulsion = 22801.436209 eV Total energy + Delta-G solvation = -3760.569352 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.68130 -40.46664 -38.69893 -38.25559 -36.50258 -35.39527 -33.44821 -33.02040 -31.40712 -30.65099 -28.52315 -27.82663 -27.25527 -26.41676 -24.02957 -23.63705 -22.83795 -21.63559 -20.75910 -18.86582 -18.16852 -18.02413 -17.66728 -17.12985 -16.94703 -16.72082 -16.37056 -16.08918 -16.00629 -15.74106 -15.27778 -15.03105 -14.84886 -14.44023 -14.13464 -13.76716 -13.58976 -13.56022 -13.34789 -13.13471 -12.87577 -12.77977 -12.63631 -12.53258 -12.48177 -12.45480 -12.25818 -12.06584 -11.77238 -11.47921 -10.98085 -10.86218 -10.55082 -10.26813 -9.51339 -9.40233 -8.65503 -8.21138 -5.90019 -0.09344 0.41590 1.45868 1.53136 1.64837 1.74504 1.94002 2.13156 2.40670 2.62505 2.97164 3.05813 3.28424 3.32438 3.57101 3.86970 4.03520 4.11161 4.24343 4.26467 4.34172 4.45203 4.46321 4.53280 4.53763 4.62426 4.68007 4.72328 4.75716 4.77638 4.79235 4.90327 4.94179 5.00946 5.12555 5.22527 5.38063 5.41330 5.56035 5.70910 5.74848 6.05034 6.27682 6.39644 6.51397 7.07095 7.24878 7.70025 8.12772 8.82737 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.003645 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.649182 B = 7679.658691 C = 8705.658599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.066 3.934 4 C 0.115 3.885 5 N -0.443 5.443 6 C -0.335 4.335 7 H 0.092 0.908 8 C 0.010 3.990 9 N -0.895 5.895 10 Si 0.977 3.023 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.268 1.268 14 C 0.462 3.538 15 O -0.624 6.624 16 C -0.032 4.032 17 C 0.057 3.943 18 C -0.100 4.100 19 N -0.368 5.368 20 C 0.033 3.967 21 C -0.135 4.135 22 C -0.095 4.095 23 C -0.081 4.081 24 C -0.098 4.098 25 C 0.195 3.805 26 N -0.513 5.513 27 H 0.053 0.947 28 H 0.035 0.965 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.024 0.976 32 H 0.101 0.899 33 H 0.050 0.950 34 H 0.270 0.730 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.212 0.788 38 H 0.195 0.805 39 H 0.195 0.805 40 H 0.177 0.823 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.331 7.020 -15.490 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C -0.012 4.012 4 C -0.009 4.009 5 N -0.161 5.161 6 C -0.462 4.462 7 H 0.110 0.890 8 C -0.192 4.192 9 N -0.533 5.533 10 Si 0.802 3.198 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.193 1.193 14 C 0.252 3.748 15 O -0.511 6.511 16 C -0.072 4.072 17 C -0.076 4.076 18 C -0.230 4.230 19 N -0.040 5.040 20 C -0.088 4.088 21 C -0.155 4.155 22 C -0.119 4.119 23 C -0.084 4.084 24 C -0.155 4.155 25 C -0.049 4.049 26 N -0.233 5.233 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.119 0.881 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.132 0.868 37 H 0.229 0.771 38 H 0.212 0.788 39 H 0.212 0.788 40 H 0.195 0.805 41 H 0.098 0.902 42 H 0.119 0.881 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.950 7.351 -14.906 16.647 hybrid contribution 0.441 -0.808 0.564 1.079 sum -0.508 6.543 -14.342 15.773 Atomic orbital electron populations 1.22888 0.80729 1.03387 1.00121 1.88049 1.20402 1.27653 1.95273 1.22783 0.94855 0.84572 0.98979 1.21353 0.91095 0.97530 0.90899 1.43530 1.57088 1.07570 1.07922 1.19556 1.42215 0.82257 1.02207 0.89001 1.25964 0.93481 1.03656 0.96093 1.70007 1.32172 1.38706 1.12401 0.85189 0.78908 0.78405 0.77325 1.19406 1.21039 1.19272 1.20796 0.80747 0.86255 0.87025 1.90510 1.57694 1.16649 1.86262 1.19667 1.04129 0.94685 0.88728 1.20556 0.90922 0.98076 0.98038 1.22681 1.02949 0.97937 0.99468 1.42965 1.12168 1.23367 1.25457 1.22408 0.99437 0.96087 0.90828 1.21336 0.96039 0.96872 1.01295 1.21397 0.94058 1.00106 0.96313 1.19390 0.98744 0.93713 0.96521 1.20608 0.90288 1.02903 1.01671 1.21398 0.83572 1.01144 0.98830 1.70522 1.31881 1.08414 1.12516 0.92888 0.94637 0.88574 0.91736 0.95751 0.88131 0.93192 0.92088 0.88779 0.86795 0.77098 0.78822 0.78785 0.80522 0.90168 0.88086 0.93986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.39 -17.79 10.44 -148.98 -1.56 -19.35 16 3 C 0.07 3.00 6.24 71.98 0.45 3.45 16 4 C 0.12 6.02 5.29 86.38 0.46 6.47 16 5 N -0.44 -23.92 2.51 -635.53 -1.60 -25.52 16 6 C -0.33 -17.67 8.48 84.04 0.71 -16.96 16 7 H 0.09 4.63 6.98 -2.91 -0.02 4.61 16 8 C 0.01 0.53 4.93 84.93 0.42 0.95 16 9 N -0.89 -48.77 11.34 21.67 0.25 -48.53 16 10 Si 0.98 41.39 29.61 68.60 2.03 43.42 16 11 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 12 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 14 C 0.46 24.80 7.59 87.66 0.67 25.47 16 15 O -0.62 -36.97 15.23 -3.07 -0.05 -37.02 16 16 C -0.03 -1.41 4.92 29.10 0.14 -1.27 16 17 C 0.06 2.44 5.85 41.58 0.24 2.68 16 18 C -0.10 -3.40 11.63 83.19 0.97 -2.43 16 19 N -0.37 -11.50 2.95 -352.16 -1.04 -12.53 16 20 C 0.03 0.66 10.95 83.21 0.91 1.57 16 21 C -0.14 -1.98 9.98 22.06 0.22 -1.76 16 22 C -0.10 -1.71 9.72 22.30 0.22 -1.49 16 23 C -0.08 -2.26 5.90 -19.72 -0.12 -2.38 16 24 C -0.10 -2.43 10.03 71.24 0.71 -1.71 16 25 C 0.19 7.22 7.52 134.11 1.01 8.23 16 26 N -0.51 -23.44 10.66 -182.40 -1.94 -25.38 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 29 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 30 H 0.06 2.52 8.14 -2.38 -0.02 2.51 16 31 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 5.54 5.37 -2.38 -0.01 5.53 16 33 H 0.05 2.69 7.59 -2.39 -0.02 2.67 16 34 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 35 H 0.09 4.06 7.65 -2.39 -0.02 4.04 16 36 H 0.11 4.63 8.06 -2.39 -0.02 4.61 16 37 H 0.21 5.42 8.06 -2.91 -0.02 5.40 16 38 H 0.19 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.20 0.96 8.06 -2.91 -0.02 0.93 16 40 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 41 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.10 1.74 8.09 -2.39 -0.02 1.72 16 43 H 0.04 1.35 8.10 -2.39 -0.02 1.34 16 Total: -1.00 -80.75 365.30 5.37 -75.38 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 1.01 Total: 26.62 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 8.26 Total: 22.89 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -4.33 Total: -111.96 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -1.60 Total: -56.37 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -80.75 5.37 -75.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581710598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.861 kcal (2) G-P(sol) polarization free energy of solvation -80.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds