Wall clock time and date at job start Tue Mar 31 2020 11:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99959 * 2 1 4 4 C 1.52996 * 109.47487 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46805 * 64.99477 * 4 3 2 6 6 C 1.36940 * 120.00218 * 269.99907 * 5 4 3 7 7 H 1.08000 * 119.99937 * 141.19232 * 6 5 4 8 8 C 1.38811 * 120.00091 * 321.19723 * 6 5 4 9 9 N 1.31619 * 119.99717 * 339.54863 * 8 6 5 10 10 Si 1.86796 * 120.00020 * 159.55146 * 8 6 5 11 11 H 1.48502 * 109.46936 * 89.99930 * 10 8 6 12 12 H 1.48499 * 109.47189 * 209.99698 * 10 8 6 13 13 H 1.48501 * 109.46962 * 329.99855 * 10 8 6 14 14 C 1.46508 * 119.99841 * 90.00554 * 5 4 3 15 15 C 1.50702 * 109.46669 * 264.62354 * 14 5 4 16 16 N 1.30969 * 126.44006 * 90.00500 * 15 14 5 17 17 C 1.35210 * 105.58301 * 179.97438 * 16 15 14 18 18 C 1.48425 * 126.41967 * 180.02562 * 17 16 15 19 19 C 1.39343 * 120.11521 * 359.73997 * 18 17 16 20 20 C 1.37999 * 119.87918 * 179.76570 * 19 18 17 21 21 C 1.38349 * 120.11637 * 0.49535 * 20 19 18 22 22 C 1.38296 * 120.24226 * 359.75964 * 21 20 19 23 23 C 1.38045 * 120.11869 * 0.02562 * 22 21 20 24 24 C 1.50694 * 120.05823 * 179.97438 * 23 22 21 25 25 N 1.30764 * 107.17057 * 359.97438 * 17 16 15 26 26 O 1.21289 * 110.09522 * 0.02562 * 25 17 16 27 27 H 1.08996 * 109.46948 * 300.00304 * 1 2 3 28 28 H 1.08999 * 109.46845 * 60.00656 * 1 2 3 29 29 H 1.08998 * 109.46483 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47367 * 59.99163 * 3 2 1 31 31 H 1.08999 * 109.47101 * 299.99974 * 3 2 1 32 32 H 1.09006 * 109.47070 * 304.99930 * 4 3 2 33 33 H 1.08997 * 109.47486 * 184.99305 * 4 3 2 34 34 H 0.97007 * 119.99618 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.46949 * 144.62102 * 14 5 4 36 36 H 1.08998 * 109.46784 * 24.62057 * 14 5 4 37 37 H 1.08002 * 120.06097 * 0.02562 * 19 18 17 38 38 H 1.08003 * 119.94486 * 180.21180 * 20 19 18 39 39 H 1.08004 * 119.87884 * 179.74582 * 21 20 19 40 40 H 1.08002 * 119.93762 * 179.97438 * 22 21 20 41 41 H 1.09008 * 109.47242 * 269.97639 * 24 23 22 42 42 H 1.08999 * 109.47533 * 29.97563 * 24 23 22 43 43 H 1.09003 * 109.47468 * 149.97733 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0979 -0.7975 -1.3344 7 1 3.8045 -1.3113 -2.2378 8 6 4.5977 -1.5171 -0.2577 9 7 5.3167 -0.9102 0.6626 10 14 4.2500 -3.3469 -0.1151 11 1 5.3222 -4.1096 -0.8037 12 1 4.2103 -3.7330 1.3182 13 1 2.9412 -3.6527 -0.7467 14 6 4.2883 1.3998 -2.4131 15 6 3.0799 1.4839 -3.3097 16 7 2.1264 2.3796 -3.2481 17 6 1.2643 2.0611 -4.2398 18 6 0.0123 2.7803 -4.5839 19 6 -0.3752 3.8996 -3.8501 20 6 -1.5377 4.5675 -4.1773 21 6 -2.3230 4.1214 -5.2252 22 6 -1.9458 3.0079 -5.9535 23 6 -0.7827 2.3350 -5.6375 24 6 -0.3733 1.1214 -6.4316 25 7 1.7406 1.0013 -4.8398 26 8 2.7805 0.6589 -4.3178 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.6885 1.8465 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5686 0.8428 33 1 3.9784 2.1766 0.0901 34 1 5.6657 -1.4130 1.4151 35 1 5.1198 0.9604 -2.9641 36 1 4.5625 2.4001 -2.0781 37 1 0.2352 4.2464 -3.0294 38 1 -1.8373 5.4372 -3.6113 39 1 -3.2342 4.6446 -5.4754 40 1 -2.5629 2.6637 -6.7704 41 1 -0.7981 0.2277 -5.9745 42 1 -0.7394 1.2156 -7.4540 43 1 0.7139 1.0430 -6.4409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590964759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:32 Heat of formation + Delta-G solvation = 78.039589 kcal Electronic energy + Delta-G solvation = -27162.289161 eV Core-core repulsion = 23405.213148 eV Total energy + Delta-G solvation = -3757.076013 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.86498 -39.41383 -37.29960 -35.71280 -35.14430 -33.36290 -32.24286 -31.24285 -30.49480 -29.04547 -27.14017 -26.42946 -25.68578 -24.34782 -23.41975 -22.24498 -21.90349 -20.82269 -20.08648 -17.49248 -17.34423 -16.80087 -16.35392 -15.74782 -15.40725 -15.10642 -14.90223 -14.75350 -14.20546 -13.98631 -13.85242 -13.73197 -13.41190 -13.36763 -13.21919 -12.72023 -12.23776 -11.92135 -11.71494 -11.61241 -11.36834 -11.28481 -11.18034 -11.08865 -10.90280 -10.87788 -10.75627 -10.43267 -10.23509 -10.08958 -9.85029 -9.67991 -8.85069 -8.78263 -8.57591 -8.48444 -6.80866 -5.88466 -3.48260 0.84037 1.28415 1.91707 2.85157 3.37881 3.45985 3.53980 3.54655 3.79231 3.91197 4.43658 4.48306 4.67735 4.79727 4.82820 4.95369 5.20149 5.26861 5.36240 5.42172 5.47334 5.65330 5.73484 5.75835 5.79881 5.82346 5.89204 6.03286 6.07749 6.14335 6.18286 6.26006 6.31432 6.35089 6.38473 6.41974 6.55258 6.56910 6.61111 6.64958 6.87314 7.53263 7.79105 8.03938 8.42404 8.73566 9.04076 9.66104 10.17002 11.14864 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017702 B = 0.004019 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.381415 B = 6965.994107 C = 7250.867970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.357 6.357 3 C 0.038 3.962 4 C 0.143 3.857 5 N -0.551 5.551 6 C -0.262 4.262 7 H 0.061 0.939 8 C 0.032 3.968 9 N -0.886 5.886 10 Si 0.903 3.097 11 H -0.286 1.286 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.216 3.784 15 C 0.205 3.795 16 N -0.496 5.496 17 C 0.198 3.802 18 C -0.013 4.013 19 C -0.074 4.074 20 C -0.132 4.132 21 C -0.106 4.106 22 C -0.128 4.128 23 C -0.052 4.052 24 C -0.130 4.130 25 N -0.388 5.388 26 O 0.071 5.929 27 H 0.027 0.973 28 H 0.025 0.975 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.048 0.952 34 H 0.257 0.743 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.795 9.574 -8.278 16.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C -0.041 4.041 4 C 0.017 3.983 5 N -0.268 5.268 6 C -0.391 4.391 7 H 0.079 0.921 8 C -0.169 4.169 9 N -0.527 5.527 10 Si 0.732 3.268 11 H -0.213 1.213 12 H -0.215 1.215 13 H -0.201 1.201 14 C 0.084 3.916 15 C -0.019 4.019 16 N -0.230 5.230 17 C -0.071 4.071 18 C -0.014 4.014 19 C -0.094 4.094 20 C -0.150 4.150 21 C -0.124 4.124 22 C -0.146 4.146 23 C -0.054 4.054 24 C -0.186 4.186 25 N -0.100 5.100 26 O 0.016 5.984 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.124 0.876 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.098 9.254 -8.570 16.800 hybrid contribution -0.694 -0.721 0.305 1.046 sum -11.792 8.532 -8.265 16.738 Atomic orbital electron populations 1.22589 0.84211 1.01329 0.98336 1.88179 1.16572 1.27782 1.94898 1.23439 0.98431 0.84276 0.97919 1.21189 0.87845 0.96941 0.92298 1.43767 1.73740 1.03169 1.06171 1.18873 1.37513 0.80801 1.01890 0.92083 1.25055 0.95436 0.98149 0.98283 1.69968 1.33092 1.36102 1.13500 0.86322 0.78491 0.85003 0.77007 1.21291 1.21493 1.20149 1.19711 0.86336 0.97874 0.87691 1.31706 0.99367 0.82870 0.87909 1.71920 1.03649 1.26896 1.20556 1.23800 0.97627 0.93201 0.92510 1.17346 0.90789 0.95898 0.97397 1.21228 0.96216 0.93457 0.98499 1.21067 0.95093 1.00585 0.98294 1.21243 0.99409 0.96324 0.95457 1.20938 0.96369 0.96378 1.00889 1.20010 0.93845 0.96858 0.94705 1.21166 1.04715 0.94612 0.98144 1.74801 0.99060 1.15499 1.20647 1.85289 1.29552 1.46649 1.36942 0.95422 0.95645 0.90804 0.95726 0.93909 0.87592 0.93404 0.93354 0.89231 0.89231 0.84758 0.85549 0.85843 0.85638 0.90938 0.91852 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 101.05 1.11 1.71 16 2 O -0.36 -8.15 10.18 -35.23 -0.36 -8.51 16 3 C 0.04 0.80 6.28 37.16 0.23 1.03 16 4 C 0.14 3.18 5.76 -4.04 -0.02 3.16 16 5 N -0.55 -12.73 2.39 -174.60 -0.42 -13.15 16 6 C -0.26 -6.83 8.94 -15.06 -0.13 -6.96 16 7 H 0.06 1.65 7.91 -52.49 -0.42 1.23 16 8 C 0.03 0.85 4.97 -17.43 -0.09 0.76 16 9 N -0.89 -24.20 11.50 55.49 0.64 -23.56 16 10 Si 0.90 21.71 29.60 -169.99 -5.03 16.68 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.22 4.13 6.34 -5.19 -0.03 4.10 16 15 C 0.20 3.98 7.84 -12.99 -0.10 3.88 16 16 N -0.50 -9.45 10.09 -9.89 -0.10 -9.55 16 17 C 0.20 3.66 7.67 -156.12 -1.20 2.46 16 18 C -0.01 -0.20 5.88 -104.89 -0.62 -0.82 16 19 C -0.07 -1.03 9.70 -39.26 -0.38 -1.41 16 20 C -0.13 -1.46 10.03 -39.63 -0.40 -1.86 16 21 C -0.11 -1.08 10.04 -39.52 -0.40 -1.47 16 22 C -0.13 -1.44 9.69 -39.63 -0.38 -1.82 16 23 C -0.05 -0.73 5.91 -104.30 -0.62 -1.34 16 24 C -0.13 -1.73 9.19 36.00 0.33 -1.40 16 25 N -0.39 -7.42 8.72 30.96 0.27 -7.15 16 26 O 0.07 1.41 11.29 18.05 0.20 1.62 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.89 6.71 -51.93 -0.35 0.55 16 32 H 0.11 2.71 5.57 -51.93 -0.29 2.42 16 33 H 0.05 0.95 7.86 -51.93 -0.41 0.54 16 34 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.09 1.62 8.08 -51.93 -0.42 1.20 16 36 H 0.09 1.51 7.83 -51.93 -0.41 1.10 16 37 H 0.13 1.86 7.88 -52.49 -0.41 1.45 16 38 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 39 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 42 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 43 H 0.10 1.48 5.18 -51.93 -0.27 1.22 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -29.83 362.66 -7.93 -37.76 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.91 Total: 0.37 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -2.69 Total: 0.02 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.39 Total: -53.41 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.15 Total: -6.89 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.83 -7.93 -37.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590964759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.796 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds