Wall clock time and date at job start Tue Mar 31 2020 11:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99959 * 2 1 4 4 C 1.52996 * 109.47487 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46805 * 64.99477 * 4 3 2 6 6 C 1.36940 * 120.00218 * 269.99907 * 5 4 3 7 7 H 1.08000 * 119.99937 * 141.19232 * 6 5 4 8 8 C 1.38811 * 120.00091 * 321.19723 * 6 5 4 9 9 N 1.31619 * 119.99717 * 339.54863 * 8 6 5 10 10 Si 1.86796 * 120.00020 * 159.55146 * 8 6 5 11 11 H 1.48502 * 109.46936 * 89.99930 * 10 8 6 12 12 H 1.48499 * 109.47189 * 209.99698 * 10 8 6 13 13 H 1.48501 * 109.46962 * 329.99855 * 10 8 6 14 14 C 1.46508 * 119.99841 * 90.00554 * 5 4 3 15 15 C 1.50702 * 109.46669 * 264.62354 * 14 5 4 16 16 N 1.30969 * 126.44006 * 90.00500 * 15 14 5 17 17 C 1.35210 * 105.58301 * 179.97438 * 16 15 14 18 18 C 1.48425 * 126.41967 * 180.02562 * 17 16 15 19 19 C 1.39343 * 120.11521 * 359.73997 * 18 17 16 20 20 C 1.37999 * 119.87918 * 179.76570 * 19 18 17 21 21 C 1.38349 * 120.11637 * 0.49535 * 20 19 18 22 22 C 1.38296 * 120.24226 * 359.75964 * 21 20 19 23 23 C 1.38045 * 120.11869 * 0.02562 * 22 21 20 24 24 C 1.50694 * 120.05823 * 179.97438 * 23 22 21 25 25 N 1.30764 * 107.17057 * 359.97438 * 17 16 15 26 26 O 1.21289 * 110.09522 * 0.02562 * 25 17 16 27 27 H 1.08996 * 109.46948 * 300.00304 * 1 2 3 28 28 H 1.08999 * 109.46845 * 60.00656 * 1 2 3 29 29 H 1.08998 * 109.46483 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47367 * 59.99163 * 3 2 1 31 31 H 1.08999 * 109.47101 * 299.99974 * 3 2 1 32 32 H 1.09006 * 109.47070 * 304.99930 * 4 3 2 33 33 H 1.08997 * 109.47486 * 184.99305 * 4 3 2 34 34 H 0.97007 * 119.99618 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.46949 * 144.62102 * 14 5 4 36 36 H 1.08998 * 109.46784 * 24.62057 * 14 5 4 37 37 H 1.08002 * 120.06097 * 0.02562 * 19 18 17 38 38 H 1.08003 * 119.94486 * 180.21180 * 20 19 18 39 39 H 1.08004 * 119.87884 * 179.74582 * 21 20 19 40 40 H 1.08002 * 119.93762 * 179.97438 * 22 21 20 41 41 H 1.09008 * 109.47242 * 269.97639 * 24 23 22 42 42 H 1.08999 * 109.47533 * 29.97563 * 24 23 22 43 43 H 1.09003 * 109.47468 * 149.97733 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0979 -0.7975 -1.3344 7 1 3.8045 -1.3113 -2.2378 8 6 4.5977 -1.5171 -0.2577 9 7 5.3167 -0.9102 0.6626 10 14 4.2500 -3.3469 -0.1151 11 1 5.3222 -4.1096 -0.8037 12 1 4.2103 -3.7330 1.3182 13 1 2.9412 -3.6527 -0.7467 14 6 4.2883 1.3998 -2.4131 15 6 3.0799 1.4839 -3.3097 16 7 2.1264 2.3796 -3.2481 17 6 1.2643 2.0611 -4.2398 18 6 0.0123 2.7803 -4.5839 19 6 -0.3752 3.8996 -3.8501 20 6 -1.5377 4.5675 -4.1773 21 6 -2.3230 4.1214 -5.2252 22 6 -1.9458 3.0079 -5.9535 23 6 -0.7827 2.3350 -5.6375 24 6 -0.3733 1.1214 -6.4316 25 7 1.7406 1.0013 -4.8398 26 8 2.7805 0.6589 -4.3178 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.6885 1.8465 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5686 0.8428 33 1 3.9784 2.1766 0.0901 34 1 5.6657 -1.4130 1.4151 35 1 5.1198 0.9604 -2.9641 36 1 4.5625 2.4001 -2.0781 37 1 0.2352 4.2464 -3.0294 38 1 -1.8373 5.4372 -3.6113 39 1 -3.2342 4.6446 -5.4754 40 1 -2.5629 2.6637 -6.7704 41 1 -0.7981 0.2277 -5.9745 42 1 -0.7394 1.2156 -7.4540 43 1 0.7139 1.0430 -6.4409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590964759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:31 Heat of formation + Delta-G solvation = 61.027846 kcal Electronic energy + Delta-G solvation = -27163.026845 eV Core-core repulsion = 23405.213148 eV Total energy + Delta-G solvation = -3757.813698 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.32970 -40.37693 -38.98374 -37.39709 -36.59161 -34.63512 -33.65728 -32.82956 -31.69412 -30.65950 -28.33861 -27.96013 -27.25749 -25.63837 -25.13507 -23.64101 -22.96817 -22.41087 -21.39490 -19.04555 -18.74332 -18.53895 -17.47507 -17.39341 -16.83753 -16.55670 -16.37729 -16.04703 -15.78393 -15.53352 -15.27757 -15.02206 -14.86759 -14.66313 -14.27239 -13.90290 -13.51014 -13.41339 -13.31457 -13.05985 -12.81420 -12.69896 -12.65352 -12.52697 -12.46361 -12.31437 -12.14551 -12.07057 -11.99335 -11.67278 -11.61556 -11.16517 -10.52956 -10.41100 -9.79692 -9.59567 -8.70533 -7.87590 -5.49185 -0.27162 0.35859 0.48907 1.44986 1.49223 1.53542 1.59806 2.06171 2.52802 2.62520 2.79930 3.09142 3.11441 3.32391 3.60928 3.83668 3.90775 4.06263 4.20945 4.31661 4.36048 4.38763 4.46405 4.53705 4.56884 4.63818 4.66964 4.68810 4.70799 4.76392 4.78261 4.87881 4.89658 4.93226 4.98090 5.08709 5.30230 5.46492 5.49592 5.56454 5.68040 5.73952 5.95921 6.36749 6.57107 7.11114 7.26288 7.73754 8.23463 9.12379 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017702 B = 0.004019 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.381415 B = 6965.994107 C = 7250.867970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.046 3.954 4 C 0.143 3.857 5 N -0.565 5.565 6 C -0.260 4.260 7 H 0.044 0.956 8 C -0.006 4.006 9 N -0.906 5.906 10 Si 0.946 3.054 11 H -0.279 1.279 12 H -0.290 1.290 13 H -0.287 1.287 14 C 0.220 3.780 15 C 0.200 3.800 16 N -0.499 5.499 17 C 0.200 3.800 18 C -0.052 4.052 19 C -0.087 4.087 20 C -0.128 4.128 21 C -0.091 4.091 22 C -0.126 4.126 23 C -0.067 4.067 24 C -0.127 4.127 25 N -0.398 5.398 26 O 0.049 5.951 27 H 0.053 0.947 28 H 0.022 0.978 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.254 0.746 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.155 0.845 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.328 11.341 -9.094 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.032 4.032 4 C 0.018 3.982 5 N -0.284 5.284 6 C -0.390 4.390 7 H 0.062 0.938 8 C -0.204 4.204 9 N -0.548 5.548 10 Si 0.775 3.225 11 H -0.205 1.205 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.088 3.912 15 C -0.023 4.023 16 N -0.233 5.233 17 C -0.069 4.069 18 C -0.054 4.054 19 C -0.107 4.107 20 C -0.146 4.146 21 C -0.110 4.110 22 C -0.143 4.143 23 C -0.069 4.069 24 C -0.183 4.183 25 N -0.113 5.113 26 O -0.002 6.002 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.143 0.857 38 H 0.174 0.826 39 H 0.181 0.819 40 H 0.173 0.827 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.612 11.020 -9.397 19.876 hybrid contribution -0.085 -1.142 0.462 1.235 sum -13.697 9.878 -8.935 19.106 Atomic orbital electron populations 1.22718 0.82053 1.02335 0.99359 1.88112 1.19111 1.29034 1.95167 1.23335 0.97349 0.83823 0.98732 1.21129 0.89026 0.97135 0.90924 1.43813 1.74441 1.02666 1.07443 1.18835 1.36443 0.82499 1.01177 0.93813 1.25495 0.95918 1.00552 0.98467 1.70044 1.34148 1.36771 1.13854 0.85644 0.77813 0.82407 0.76620 1.20546 1.21573 1.21249 1.19854 0.86287 0.98627 0.86382 1.31511 0.99552 0.83137 0.88108 1.71911 1.03695 1.26865 1.20831 1.24408 0.98190 0.92746 0.91591 1.17607 0.90726 0.97444 0.99592 1.21306 0.97503 0.93429 0.98415 1.21440 0.93742 1.00863 0.98520 1.21740 1.00035 0.95355 0.93853 1.21315 0.95335 0.96166 1.01504 1.20201 0.94861 0.97359 0.94460 1.21107 1.03068 0.94427 0.99736 1.74867 0.99028 1.16298 1.21148 1.85263 1.30300 1.47212 1.37427 0.92871 0.95936 0.89938 0.93529 0.94165 0.90734 0.91289 0.93681 0.88575 0.86675 0.85654 0.82572 0.81867 0.82716 0.91770 0.89115 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.14 11.01 113.37 1.25 2.39 16 2 O -0.40 -18.07 10.18 -148.98 -1.52 -19.59 16 3 C 0.05 1.89 6.28 71.98 0.45 2.35 16 4 C 0.14 6.38 5.76 86.38 0.50 6.88 16 5 N -0.56 -26.40 2.39 -706.32 -1.69 -28.08 16 6 C -0.26 -13.82 8.94 84.03 0.75 -13.07 16 7 H 0.04 2.45 7.91 -2.91 -0.02 2.42 16 8 C -0.01 -0.30 4.97 84.86 0.42 0.12 16 9 N -0.91 -50.25 11.50 21.65 0.25 -50.00 16 10 Si 0.95 45.33 29.60 68.60 2.03 47.36 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 13 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 14 C 0.22 8.43 6.34 85.63 0.54 8.97 16 15 C 0.20 7.92 7.84 88.36 0.69 8.61 16 16 N -0.50 -19.18 10.09 -302.53 -3.05 -22.24 16 17 C 0.20 7.52 7.67 137.30 1.05 8.57 16 18 C -0.05 -1.62 5.88 -20.04 -0.12 -1.74 16 19 C -0.09 -2.28 9.70 22.48 0.22 -2.06 16 20 C -0.13 -2.38 10.03 22.24 0.22 -2.16 16 21 C -0.09 -1.44 10.04 22.31 0.22 -1.22 16 22 C -0.13 -2.37 9.69 22.24 0.22 -2.15 16 23 C -0.07 -1.77 5.91 -19.66 -0.12 -1.88 16 24 C -0.13 -3.30 9.19 71.23 0.65 -2.65 16 25 N -0.40 -15.73 8.72 -59.15 -0.52 -16.25 16 26 O 0.05 2.03 11.29 74.67 0.84 2.87 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.04 1.67 6.71 -2.39 -0.02 1.65 16 32 H 0.07 3.86 5.57 -2.38 -0.01 3.85 16 33 H 0.07 2.70 7.86 -2.39 -0.02 2.68 16 34 H 0.25 13.71 8.31 -92.70 -0.77 12.94 16 35 H 0.10 3.52 8.08 -2.39 -0.02 3.50 16 36 H 0.12 3.78 7.83 -2.39 -0.02 3.76 16 37 H 0.13 3.42 7.88 -2.91 -0.02 3.40 16 38 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 39 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 41 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.09 1.77 8.09 -2.39 -0.02 1.75 16 43 H 0.07 2.26 5.18 -2.39 -0.01 2.25 16 Total: -1.00 -66.13 362.66 4.33 -61.80 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 1.02 Total: 13.16 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 6.96 Total: 10.96 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -5.01 Total: -116.57 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.67 Total: -16.72 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -66.13 4.33 -61.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590964759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.829 kcal (2) G-P(sol) polarization free energy of solvation -66.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds