Wall clock time and date at job start Tue Mar 31 2020 11:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34700 * 125.66732 * 2 1 4 4 C 1.40979 * 107.02358 * 180.02562 * 3 2 1 5 5 C 1.35897 * 106.74490 * 359.97438 * 4 3 2 6 6 C 1.47861 * 125.92820 * 179.97438 * 5 4 3 7 7 N 1.31799 * 126.07156 * 320.28225 * 6 5 4 8 8 N 1.40068 * 108.08884 * 180.02562 * 7 6 5 9 9 H 0.97001 * 125.91112 * 180.02562 * 8 7 6 10 10 C 1.35068 * 108.17696 * 359.73786 * 8 7 6 11 11 C 1.35025 * 108.03078 * 0.42697 * 10 8 7 12 12 C 1.50704 * 126.08300 * 179.84169 * 11 10 8 13 13 N 1.46900 * 109.46721 * 305.34175 * 12 11 10 14 14 C 1.47445 * 111.00283 * 74.12179 * 13 12 11 15 15 C 1.54314 * 107.23452 * 236.74018 * 14 13 12 16 16 C 1.55137 * 103.17735 * 337.63289 * 15 14 13 17 17 O 1.42897 * 110.98935 * 277.64432 * 16 15 14 18 18 C 1.50704 * 110.99128 * 153.83034 * 16 15 14 19 19 H 1.07998 * 120.00208 * 241.45340 * 18 16 15 20 20 C 1.37884 * 120.00071 * 61.45210 * 18 16 15 21 21 N 1.31516 * 119.99430 * 359.97438 * 20 18 16 22 22 Si 1.86787 * 120.00132 * 179.97438 * 20 18 16 23 23 H 1.48510 * 109.47313 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47240 * 119.99713 * 22 20 18 25 25 H 1.48503 * 109.47476 * 239.99967 * 22 20 18 26 26 C 1.47852 * 110.99722 * 313.28061 * 13 12 11 27 27 O 1.34334 * 125.66596 * 180.35422 * 2 1 3 28 28 H 1.08993 * 109.46976 * 89.99403 * 1 2 3 29 29 H 1.09000 * 109.47052 * 209.99860 * 1 2 3 30 30 H 1.09003 * 109.46750 * 329.99677 * 1 2 3 31 31 H 1.07998 * 126.48491 * 0.06207 * 3 2 1 32 32 H 1.08007 * 126.62220 * 180.02562 * 4 3 2 33 33 H 1.07994 * 125.98388 * 180.29702 * 10 8 7 34 34 H 1.08994 * 109.47377 * 185.34313 * 12 11 10 35 35 H 1.09003 * 109.46847 * 65.33547 * 12 11 10 36 36 H 1.09001 * 109.88636 * 117.33624 * 14 13 12 37 37 H 1.09003 * 110.02022 * 356.22749 * 14 13 12 38 38 H 1.09008 * 110.70360 * 96.10324 * 15 14 13 39 39 H 1.09001 * 110.71053 * 219.15927 * 15 14 13 40 40 H 0.96699 * 114.00486 * 298.54536 * 17 16 15 41 41 H 0.97007 * 119.99562 * 179.97438 * 21 20 18 42 42 H 1.09003 * 110.37187 * 265.19451 * 26 13 12 43 43 H 1.08996 * 110.37634 * 27.53863 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2925 1.0943 0.0000 4 6 3.6283 0.6436 -0.0006 5 6 3.5832 -0.7146 -0.0004 6 6 4.7512 -1.6214 -0.0013 7 7 5.8660 -1.4502 -0.6832 8 7 6.7143 -2.5302 -0.4079 9 1 7.6027 -2.6635 -0.7739 10 6 6.0838 -3.3507 0.4601 11 6 4.8696 -2.8236 0.7268 12 6 3.8288 -3.4116 1.6443 13 7 3.5387 -4.7922 1.2346 14 6 4.6404 -5.6974 1.6103 15 6 5.1212 -6.3926 0.3192 16 6 3.8956 -6.2732 -0.6243 17 8 2.9421 -7.3035 -0.3576 18 6 4.3225 -6.2967 -2.0694 19 1 4.1219 -5.4473 -2.7056 20 6 4.9692 -7.4025 -2.5794 21 7 5.2138 -8.4366 -1.8045 22 14 5.4976 -7.4319 -4.3707 23 1 5.1087 -6.1555 -5.0226 24 1 6.9712 -7.5984 -4.4495 25 1 4.8338 -8.5649 -5.0643 26 6 3.3355 -4.8794 -0.2272 27 8 2.2903 -1.0914 -0.0067 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.9615 2.1223 0.0009 32 1 4.5159 1.2590 -0.0004 33 1 6.4804 -4.2688 0.8677 34 1 2.9171 -2.8169 1.5882 35 1 4.2029 -3.4074 2.6681 36 1 4.2823 -6.4421 2.3211 37 1 5.4581 -5.1271 2.0511 38 1 5.9827 -5.8729 -0.1003 39 1 5.3598 -7.4388 0.5107 40 1 3.2812 -8.1986 -0.4951 41 1 5.6685 -9.2148 -2.1634 42 1 2.2742 -4.8149 -0.4673 43 1 3.8890 -4.0896 -0.7351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592524074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:59 Heat of formation + Delta-G solvation = 30.932243 kcal Electronic energy + Delta-G solvation = -27559.344823 eV Core-core repulsion = 23800.226082 eV Total energy + Delta-G solvation = -3759.118741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.56996 -42.38593 -39.92634 -36.70277 -34.21146 -34.19534 -34.03879 -32.60865 -31.65340 -30.36036 -29.88038 -27.54837 -27.15014 -25.47157 -23.53640 -22.35311 -21.97147 -21.55376 -21.18722 -20.67778 -19.04027 -18.89684 -17.45435 -17.20101 -16.92956 -16.76516 -16.26793 -15.75223 -15.71815 -15.51846 -15.12459 -14.88746 -14.21639 -14.07801 -13.93538 -13.84823 -13.78250 -13.72172 -13.43876 -13.34953 -13.07144 -12.77245 -12.70868 -12.64329 -12.49673 -12.27364 -12.08498 -11.88374 -11.60689 -11.11283 -11.07629 -10.70553 -10.61588 -10.06735 -9.66962 -9.21398 -8.99988 -8.23788 -6.38209 0.23154 0.89570 1.31751 1.32099 1.37250 1.46695 1.51651 1.94030 2.29496 2.34335 3.00502 3.27525 3.46354 3.74626 3.96711 4.00190 4.05051 4.10101 4.14690 4.22534 4.39585 4.50342 4.57011 4.63437 4.70872 4.75969 4.81386 4.83200 4.87104 4.91103 5.03306 5.08101 5.13156 5.21068 5.32092 5.39713 5.51499 5.58270 5.62477 5.82213 6.00114 6.09598 6.24110 6.28312 6.34983 6.48803 6.66027 7.33178 7.48808 8.81183 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014260 B = 0.004360 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.996290 B = 6420.171289 C = 6493.912552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 C -0.215 4.215 4 C -0.167 4.167 5 C 0.025 3.975 6 C 0.136 3.864 7 N -0.289 5.289 8 N -0.453 5.453 9 H 0.456 0.544 10 C 0.078 3.922 11 C -0.255 4.255 12 C 0.128 3.872 13 N -0.522 5.522 14 C 0.044 3.956 15 C -0.131 4.131 16 C 0.238 3.762 17 O -0.590 6.590 18 C -0.556 4.556 19 H 0.037 0.963 20 C 0.041 3.959 21 N -0.904 5.904 22 Si 0.949 3.051 23 H -0.282 1.282 24 H -0.272 1.272 25 H -0.277 1.277 26 C 0.075 3.925 27 O -0.184 6.184 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.183 0.817 32 H 0.160 0.840 33 H 0.196 0.804 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.371 0.629 41 H 0.269 0.731 42 H 0.041 0.959 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.634 15.158 7.229 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 C -0.234 4.234 4 C -0.188 4.188 5 C -0.026 4.026 6 C -0.028 4.028 7 N -0.116 5.116 8 N -0.164 5.164 9 H 0.304 0.696 10 C -0.070 4.070 11 C -0.268 4.268 12 C -0.001 4.001 13 N -0.244 5.244 14 C -0.083 4.083 15 C -0.170 4.170 16 C 0.198 3.802 17 O -0.398 6.398 18 C -0.594 4.594 19 H 0.055 0.945 20 C -0.161 4.161 21 N -0.543 5.543 22 Si 0.775 3.225 23 H -0.207 1.207 24 H -0.197 1.197 25 H -0.203 1.203 26 C -0.052 4.052 27 O -0.080 6.080 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.137 0.863 31 H 0.200 0.800 32 H 0.178 0.822 33 H 0.213 0.787 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.220 0.780 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.867 15.769 6.844 17.212 hybrid contribution 1.649 -1.120 -1.504 2.497 sum 0.782 14.649 5.340 15.612 Atomic orbital electron populations 1.20559 0.82253 1.05543 1.04717 1.23454 0.95630 0.83497 1.03517 1.21835 0.91301 1.00718 1.09545 1.22006 0.99600 0.92253 1.04986 1.18884 0.80728 0.91919 1.11071 1.19275 0.91532 0.94603 0.97400 1.77454 1.02552 1.09447 1.22172 1.46192 1.17246 1.16560 1.36411 0.69633 1.22815 0.93542 0.96814 0.93826 1.20989 0.98596 0.98112 1.09069 1.20810 0.94726 0.87936 0.96668 1.63762 1.40578 1.06183 1.13926 1.22933 0.92284 0.95669 0.97436 1.23074 0.98748 1.00132 0.95056 1.19826 0.84930 0.84093 0.91374 1.86151 1.43308 1.18630 1.91670 1.21690 1.38526 1.02102 0.97090 0.94484 1.25507 0.94550 0.94930 1.01093 1.69808 1.41993 1.05923 1.36574 0.85664 0.78247 0.77681 0.80910 1.20726 1.19750 1.20291 1.22819 0.98686 0.96422 0.87313 1.84081 1.15827 1.36424 1.71694 0.88981 0.90453 0.86263 0.80010 0.82241 0.78711 0.90930 0.88393 0.91278 0.90977 0.92815 0.92266 0.78028 0.92115 0.94074 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.41 71.24 0.74 -0.41 16 2 C -0.01 -0.25 7.32 24.88 0.18 -0.06 16 3 C -0.22 -4.79 10.78 22.13 0.24 -4.55 16 4 C -0.17 -4.55 10.85 22.40 0.24 -4.30 16 5 C 0.03 0.82 6.80 24.28 0.17 0.99 16 6 C 0.14 4.75 7.01 42.39 0.30 5.05 16 7 N -0.29 -9.81 12.75 -48.36 -0.62 -10.42 16 8 N -0.45 -13.00 7.35 -57.70 -0.42 -13.43 16 9 H 0.46 9.77 8.96 -213.34 -1.91 7.86 16 10 C 0.08 2.36 9.58 83.46 0.80 3.16 16 11 C -0.25 -8.52 3.57 -19.91 -0.07 -8.59 16 12 C 0.13 4.20 5.86 85.56 0.50 4.71 16 13 N -0.52 -20.26 5.41 -889.08 -4.81 -25.07 16 14 C 0.04 1.58 5.90 86.64 0.51 2.10 16 15 C -0.13 -5.69 4.94 31.77 0.16 -5.53 16 16 C 0.24 11.97 0.88 -9.99 -0.01 11.96 16 17 O -0.59 -31.77 13.16 -148.98 -1.96 -33.73 16 18 C -0.56 -30.59 8.28 25.60 0.21 -30.38 16 19 H 0.04 2.14 7.79 -2.91 -0.02 2.11 16 20 C 0.04 2.14 5.29 84.66 0.45 2.58 16 21 N -0.90 -47.43 10.74 21.45 0.23 -47.20 16 22 Si 0.95 42.66 29.54 68.60 2.03 44.68 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 26 C 0.08 3.49 5.56 86.94 0.48 3.98 16 27 O -0.18 -6.07 9.63 -6.43 -0.06 -6.13 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 33 H 0.20 5.27 4.75 -2.91 -0.01 5.26 16 34 H 0.07 2.49 6.69 -2.39 -0.02 2.47 16 35 H 0.10 2.70 7.91 -2.39 -0.02 2.68 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.07 2.09 5.57 -2.39 -0.01 2.08 16 38 H 0.05 2.28 6.29 -2.38 -0.01 2.27 16 39 H 0.06 2.76 7.53 -2.39 -0.02 2.75 16 40 H 0.37 19.99 7.57 -74.06 -0.56 19.43 16 41 H 0.27 13.41 8.31 -92.70 -0.77 12.64 16 42 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.05 2.25 5.60 -2.39 -0.01 2.24 16 Total: -1.00 -67.07 346.74 -2.12 -69.18 By element: Atomic # 1 Polarization: 42.83 SS G_CDS: -1.40 Total: 41.44 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 4.90 Total: -19.32 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -5.62 Total: -96.12 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -2.02 Total: -39.86 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -67.07 -2.12 -69.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592524074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.113 kcal (2) G-P(sol) polarization free energy of solvation -67.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds