Wall clock time and date at job start Tue Mar 31 2020 11:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31802 * 119.67256 * 2 1 4 4 C 1.31867 * 121.80319 * 180.02562 * 3 2 1 5 5 C 1.38281 * 120.92965 * 359.97111 * 4 3 2 6 6 C 1.38498 * 119.24075 * 359.77181 * 5 4 3 7 7 C 1.38903 * 119.66639 * 179.97438 * 2 1 3 8 8 N 1.39750 * 120.50147 * 359.97438 * 7 2 1 9 9 C 1.34770 * 120.00348 * 145.58203 * 8 7 2 10 10 O 1.21374 * 120.00158 * 4.70030 * 9 8 7 11 11 C 1.49358 * 120.00283 * 184.70473 * 9 8 7 12 12 O 1.21363 * 119.99368 * 6.25618 * 11 9 8 13 13 N 1.34763 * 120.00215 * 186.26219 * 11 9 8 14 14 C 1.46927 * 120.63261 * 355.20404 * 13 11 9 15 15 C 1.53198 * 108.89175 * 126.34433 * 14 13 11 16 16 C 1.53351 * 109.14890 * 54.58179 * 15 14 13 17 17 C 1.53039 * 109.60378 * 298.71116 * 16 15 14 18 18 H 1.09003 * 109.49727 * 301.42188 * 17 16 15 19 19 C 1.50702 * 109.49607 * 181.32784 * 17 16 15 20 20 H 1.08005 * 119.99826 * 0.16068 * 19 17 16 21 21 C 1.37881 * 120.00186 * 180.16022 * 19 17 16 22 22 N 1.31510 * 119.99547 * 179.97438 * 21 19 17 23 23 Si 1.86799 * 119.99950 * 0.02562 * 21 19 17 24 24 H 1.48493 * 109.47162 * 89.99735 * 23 21 19 25 25 H 1.48494 * 109.46935 * 209.99862 * 23 21 19 26 26 H 1.48503 * 109.46740 * 329.99882 * 23 21 19 27 27 C 1.46925 * 120.63286 * 175.22877 * 13 11 9 28 28 H 1.09000 * 109.47704 * 270.02391 * 1 2 3 29 29 H 1.09004 * 109.47391 * 30.02343 * 1 2 3 30 30 H 1.08999 * 109.47321 * 150.02159 * 1 2 3 31 31 H 1.07997 * 119.53641 * 179.97438 * 4 3 2 32 32 H 1.07997 * 120.37974 * 180.02562 * 5 4 3 33 33 H 1.07992 * 120.82022 * 180.24805 * 6 5 4 34 34 H 0.96998 * 119.99107 * 325.58187 * 8 7 2 35 35 H 1.08997 * 109.59102 * 246.20145 * 14 13 11 36 36 H 1.08997 * 109.58681 * 6.48720 * 14 13 11 37 37 H 1.08999 * 109.49462 * 174.65989 * 15 14 13 38 38 H 1.08994 * 109.49677 * 294.75182 * 15 14 13 39 39 H 1.08998 * 109.41664 * 178.67267 * 16 15 14 40 40 H 1.08995 * 109.42087 * 58.75135 * 16 15 14 41 41 H 0.97003 * 119.99512 * 179.97438 * 22 21 19 42 42 H 1.09008 * 109.58567 * 353.37720 * 27 13 11 43 43 H 1.09001 * 109.58577 * 113.65117 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1595 1.1452 0.0000 4 6 3.4772 1.1942 -0.0005 5 6 4.2316 0.0353 -0.0005 6 6 3.5878 -1.1910 0.0049 7 6 2.1945 -1.2070 0.0005 8 7 1.4993 -2.4193 0.0016 9 6 1.9990 -3.4833 -0.6575 10 8 3.0923 -3.4148 -1.1801 11 6 1.2074 -4.7468 -0.7451 12 8 0.0701 -4.7807 -0.3228 13 7 1.7560 -5.8491 -1.2929 14 6 3.0917 -5.7966 -1.9026 15 6 3.9669 -6.8859 -1.2744 16 6 3.2617 -8.2404 -1.4142 17 6 1.9247 -8.2025 -0.6706 18 1 2.0990 -7.9686 0.3796 19 6 1.2489 -9.5449 -0.7821 20 1 1.7263 -10.3462 -1.3265 21 6 0.0211 -9.7500 -0.1891 22 7 -0.5687 -10.9214 -0.2869 23 14 -0.8049 -8.3638 0.7518 24 1 -1.6609 -7.5788 -0.1735 25 1 -1.6424 -8.9331 1.8379 26 1 0.2319 -7.4776 1.3390 27 6 1.0295 -7.1262 -1.2924 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 3.9743 2.1530 -0.0009 32 1 5.3104 0.0858 -0.0004 33 1 4.1518 -2.1119 0.0091 34 1 0.6571 -2.4948 0.4768 35 1 3.0105 -5.9671 -2.9761 36 1 3.5383 -4.8190 -1.7207 37 1 4.9294 -6.9186 -1.7849 38 1 4.1219 -6.6641 -0.2186 39 1 3.8914 -9.0223 -0.9896 40 1 3.0848 -8.4497 -2.4692 41 1 -1.4323 -11.0658 0.1305 42 1 0.1161 -7.0267 -0.7057 43 1 0.7777 -7.4037 -2.3160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595082738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:46 Heat of formation + Delta-G solvation = -6.756183 kcal Electronic energy + Delta-G solvation = -26875.735651 eV Core-core repulsion = 23114.982618 eV Total energy + Delta-G solvation = -3760.753034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.56569 -40.29591 -38.70899 -37.32282 -35.69522 -33.44721 -33.26034 -32.02518 -31.19922 -30.59231 -27.99504 -26.41657 -25.24330 -24.38278 -22.75368 -22.21118 -21.99313 -20.51886 -19.24374 -18.17637 -17.54646 -16.93375 -16.72404 -16.55731 -16.30079 -15.80702 -15.39075 -14.78256 -14.45471 -14.27692 -14.11779 -14.07745 -13.73747 -13.44951 -13.19033 -12.85218 -12.77725 -12.64811 -12.60368 -12.30634 -12.24790 -11.82079 -11.29012 -11.14893 -10.98161 -10.59986 -10.45726 -10.21880 -9.96127 -9.84816 -9.79332 -9.52311 -9.21924 -8.82808 -8.70036 -8.63383 -8.28627 -6.17661 -4.19332 0.58236 0.94738 1.41924 2.18074 3.12254 3.28878 3.35699 3.43950 3.44629 3.49642 3.99623 4.19696 4.33633 4.37720 4.58934 4.76480 4.90561 5.13706 5.17226 5.26747 5.28015 5.32671 5.41539 5.54465 5.64843 5.72136 5.77168 5.88195 5.94423 6.02639 6.06096 6.23756 6.33794 6.37086 6.48026 6.51241 6.65754 6.70590 6.74983 7.06039 7.33219 7.46195 7.57884 7.63164 7.66287 8.02447 8.41623 8.86126 9.43164 10.94443 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.003620 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.694201 B = 7732.042518 C = 8738.627895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.112 3.888 3 N -0.468 5.468 4 C 0.086 3.914 5 C -0.159 4.159 6 C -0.074 4.074 7 C 0.092 3.908 8 N -0.640 5.640 9 C 0.517 3.483 10 O -0.491 6.491 11 C 0.497 3.503 12 O -0.528 6.528 13 N -0.562 5.562 14 C 0.045 3.955 15 C -0.133 4.133 16 C -0.103 4.103 17 C 0.006 3.994 18 H 0.031 0.969 19 C -0.516 4.516 20 H 0.079 0.921 21 C 0.073 3.927 22 N -0.893 5.893 23 Si 0.878 3.122 24 H -0.271 1.271 25 H -0.293 1.293 26 H -0.266 1.266 27 C 0.097 3.903 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.158 0.842 32 H 0.140 0.860 33 H 0.153 0.847 34 H 0.426 0.574 35 H 0.065 0.935 36 H 0.149 0.851 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.266 0.734 42 H 0.080 0.920 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.215 21.990 0.044 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.028 4.028 3 N -0.177 5.177 4 C -0.071 4.071 5 C -0.180 4.180 6 C -0.102 4.102 7 C -0.004 4.004 8 N -0.287 5.287 9 C 0.302 3.698 10 O -0.367 6.367 11 C 0.278 3.722 12 O -0.406 6.406 13 N -0.294 5.294 14 C -0.076 4.076 15 C -0.171 4.171 16 C -0.141 4.141 17 C -0.013 4.013 18 H 0.049 0.951 19 C -0.554 4.554 20 H 0.097 0.903 21 C -0.130 4.130 22 N -0.531 5.531 23 Si 0.708 3.292 24 H -0.198 1.198 25 H -0.220 1.220 26 H -0.191 1.191 27 C -0.023 4.023 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.176 0.824 32 H 0.158 0.842 33 H 0.170 0.830 34 H 0.265 0.735 35 H 0.084 0.916 36 H 0.165 0.835 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.709 22.582 -0.095 23.861 hybrid contribution -0.433 -0.339 0.672 0.869 sum 7.276 22.242 0.577 23.409 Atomic orbital electron populations 1.20755 0.88420 1.04125 1.03501 1.21186 0.97176 0.86770 0.97708 1.67526 1.10260 1.27642 1.12305 1.22740 0.89257 0.98705 0.96415 1.22089 1.01753 0.92555 1.01588 1.21815 0.92580 0.99978 0.95797 1.18604 0.92328 0.85768 1.03743 1.43182 1.26134 1.08395 1.50951 1.20851 0.86183 0.85093 0.77716 1.90280 1.20387 1.80711 1.45319 1.19587 0.86940 0.84424 0.81296 1.90777 1.17574 1.83752 1.48477 1.48416 1.18669 1.09033 1.53254 1.23296 0.81838 1.05361 0.97086 1.22000 0.98108 0.96246 1.00759 1.21538 0.97069 0.94816 1.00671 1.19488 0.92278 0.94057 0.95486 0.95090 1.20956 1.04010 0.95448 1.35000 0.90282 1.25060 0.97050 0.95449 0.95464 1.69884 1.16513 1.22476 1.44181 0.87003 0.80183 0.81811 0.80251 1.19754 1.22050 1.19064 1.22905 0.96720 0.80150 1.02511 0.89962 0.89732 0.90566 0.82445 0.84234 0.82970 0.73494 0.91629 0.83470 0.91448 0.92295 0.92179 0.92450 0.92407 0.90230 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.64 36.01 0.35 -0.58 16 2 C 0.11 1.20 6.80 -82.36 -0.56 0.64 16 3 N -0.47 -5.09 10.27 -9.30 -0.10 -5.19 16 4 C 0.09 0.76 11.18 -17.52 -0.20 0.57 16 5 C -0.16 -1.36 10.10 -39.47 -0.40 -1.76 16 6 C -0.07 -0.79 8.81 -39.08 -0.34 -1.14 16 7 C 0.09 1.04 6.30 -83.59 -0.53 0.52 16 8 N -0.64 -7.60 4.73 -10.20 -0.05 -7.65 16 9 C 0.52 7.39 7.67 -11.63 -0.09 7.30 16 10 O -0.49 -7.00 10.47 5.48 0.06 -6.95 16 11 C 0.50 8.79 7.75 -11.63 -0.09 8.70 16 12 O -0.53 -10.59 15.94 5.49 0.09 -10.50 16 13 N -0.56 -10.38 2.97 -173.31 -0.52 -10.90 16 14 C 0.05 0.69 6.27 -3.71 -0.02 0.67 16 15 C -0.13 -2.04 6.11 -26.45 -0.16 -2.20 16 16 C -0.10 -1.94 5.11 -26.53 -0.14 -2.07 16 17 C 0.01 0.15 1.84 -91.66 -0.17 -0.02 16 18 H 0.03 0.75 7.21 -51.93 -0.37 0.37 16 19 C -0.52 -14.02 9.15 -34.44 -0.31 -14.33 16 20 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 21 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 22 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 23 Si 0.88 22.32 24.32 -169.99 -4.13 18.19 16 24 H -0.27 -6.89 6.92 56.52 0.39 -6.50 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 26 H -0.27 -6.67 6.53 56.52 0.37 -6.30 16 27 C 0.10 2.11 5.09 -3.71 -0.02 2.10 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.63 7.16 -51.93 -0.37 0.25 16 31 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.15 1.68 6.29 -52.49 -0.33 1.35 16 34 H 0.43 4.55 7.36 -40.82 -0.30 4.25 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.15 2.14 3.70 -57.21 -0.21 1.93 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.08 1.92 2.35 -51.92 -0.12 1.79 16 43 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 342.09 15.07 5.16 5.16 Total: -1.00 -32.08 342.09 -7.03 -39.11 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.54 Total: 4.46 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.78 Total: 0.35 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.11 Total: -49.82 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.14 Total: -17.44 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.13 Total: 18.19 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.08 -7.03 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595082738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.352 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds