Wall clock time and date at job start Tue Mar 31 2020 11:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31802 * 119.67256 * 2 1 4 4 C 1.31867 * 121.80319 * 180.02562 * 3 2 1 5 5 C 1.38281 * 120.92965 * 359.97111 * 4 3 2 6 6 C 1.38498 * 119.24075 * 359.77181 * 5 4 3 7 7 C 1.38903 * 119.66639 * 179.97438 * 2 1 3 8 8 N 1.39750 * 120.50147 * 359.97438 * 7 2 1 9 9 C 1.34770 * 120.00348 * 145.58203 * 8 7 2 10 10 O 1.21374 * 120.00158 * 4.70030 * 9 8 7 11 11 C 1.49358 * 120.00283 * 184.70473 * 9 8 7 12 12 O 1.21363 * 119.99368 * 6.25618 * 11 9 8 13 13 N 1.34763 * 120.00215 * 186.26219 * 11 9 8 14 14 C 1.46927 * 120.63261 * 355.20404 * 13 11 9 15 15 C 1.53198 * 108.89175 * 126.34433 * 14 13 11 16 16 C 1.53351 * 109.14890 * 54.58179 * 15 14 13 17 17 C 1.53039 * 109.60378 * 298.71116 * 16 15 14 18 18 H 1.09003 * 109.49727 * 301.42188 * 17 16 15 19 19 C 1.50702 * 109.49607 * 181.32784 * 17 16 15 20 20 H 1.08005 * 119.99826 * 0.16068 * 19 17 16 21 21 C 1.37881 * 120.00186 * 180.16022 * 19 17 16 22 22 N 1.31510 * 119.99547 * 179.97438 * 21 19 17 23 23 Si 1.86799 * 119.99950 * 0.02562 * 21 19 17 24 24 H 1.48493 * 109.47162 * 89.99735 * 23 21 19 25 25 H 1.48494 * 109.46935 * 209.99862 * 23 21 19 26 26 H 1.48503 * 109.46740 * 329.99882 * 23 21 19 27 27 C 1.46925 * 120.63286 * 175.22877 * 13 11 9 28 28 H 1.09000 * 109.47704 * 270.02391 * 1 2 3 29 29 H 1.09004 * 109.47391 * 30.02343 * 1 2 3 30 30 H 1.08999 * 109.47321 * 150.02159 * 1 2 3 31 31 H 1.07997 * 119.53641 * 179.97438 * 4 3 2 32 32 H 1.07997 * 120.37974 * 180.02562 * 5 4 3 33 33 H 1.07992 * 120.82022 * 180.24805 * 6 5 4 34 34 H 0.96998 * 119.99107 * 325.58187 * 8 7 2 35 35 H 1.08997 * 109.59102 * 246.20145 * 14 13 11 36 36 H 1.08997 * 109.58681 * 6.48720 * 14 13 11 37 37 H 1.08999 * 109.49462 * 174.65989 * 15 14 13 38 38 H 1.08994 * 109.49677 * 294.75182 * 15 14 13 39 39 H 1.08998 * 109.41664 * 178.67267 * 16 15 14 40 40 H 1.08995 * 109.42087 * 58.75135 * 16 15 14 41 41 H 0.97003 * 119.99512 * 179.97438 * 22 21 19 42 42 H 1.09008 * 109.58567 * 353.37720 * 27 13 11 43 43 H 1.09001 * 109.58577 * 113.65117 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1595 1.1452 0.0000 4 6 3.4772 1.1942 -0.0005 5 6 4.2316 0.0353 -0.0005 6 6 3.5878 -1.1910 0.0049 7 6 2.1945 -1.2070 0.0005 8 7 1.4993 -2.4193 0.0016 9 6 1.9990 -3.4833 -0.6575 10 8 3.0923 -3.4148 -1.1801 11 6 1.2074 -4.7468 -0.7451 12 8 0.0701 -4.7807 -0.3228 13 7 1.7560 -5.8491 -1.2929 14 6 3.0917 -5.7966 -1.9026 15 6 3.9669 -6.8859 -1.2744 16 6 3.2617 -8.2404 -1.4142 17 6 1.9247 -8.2025 -0.6706 18 1 2.0990 -7.9686 0.3796 19 6 1.2489 -9.5449 -0.7821 20 1 1.7263 -10.3462 -1.3265 21 6 0.0211 -9.7500 -0.1891 22 7 -0.5687 -10.9214 -0.2869 23 14 -0.8049 -8.3638 0.7518 24 1 -1.6609 -7.5788 -0.1735 25 1 -1.6424 -8.9331 1.8379 26 1 0.2319 -7.4776 1.3390 27 6 1.0295 -7.1262 -1.2924 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 3.9743 2.1530 -0.0009 32 1 5.3104 0.0858 -0.0004 33 1 4.1518 -2.1119 0.0091 34 1 0.6571 -2.4948 0.4768 35 1 3.0105 -5.9671 -2.9761 36 1 3.5383 -4.8190 -1.7207 37 1 4.9294 -6.9186 -1.7849 38 1 4.1219 -6.6641 -0.2186 39 1 3.8914 -9.0223 -0.9896 40 1 3.0848 -8.4497 -2.4692 41 1 -1.4323 -11.0658 0.1305 42 1 0.1161 -7.0267 -0.7057 43 1 0.7777 -7.4037 -2.3160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595082738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:45 Heat of formation + Delta-G solvation = -29.107431 kcal Electronic energy + Delta-G solvation = -26876.704874 eV Core-core repulsion = 23114.982618 eV Total energy + Delta-G solvation = -3761.722256 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.62375 -41.32199 -39.90457 -38.78899 -36.71791 -35.23367 -34.03640 -33.66557 -32.29919 -32.02088 -28.76491 -27.75784 -27.00436 -25.48578 -23.77352 -23.64422 -22.97875 -21.75119 -20.74429 -19.35701 -18.91589 -18.56149 -17.98601 -17.62467 -17.16340 -16.99886 -16.49927 -16.37442 -15.81672 -15.65775 -15.25512 -15.18769 -14.95765 -14.77927 -14.64611 -14.25058 -14.11476 -13.76668 -13.42640 -13.37261 -13.26418 -13.06340 -12.95165 -12.54164 -12.35909 -12.17926 -12.13626 -11.80743 -11.63692 -11.37597 -11.10979 -10.82952 -10.71611 -10.55025 -10.06490 -9.82370 -9.43944 -8.39753 -6.43087 -0.31002 0.18880 0.35169 1.01698 1.23794 1.30381 1.36832 1.86861 2.19407 2.26524 2.73434 2.95466 2.98842 3.34732 3.64803 3.87124 3.92856 4.04316 4.09272 4.11956 4.22538 4.36661 4.46889 4.54219 4.55715 4.60942 4.67095 4.70341 4.73003 4.88781 4.98545 5.03046 5.11244 5.14424 5.17491 5.24343 5.31482 5.45917 5.55821 5.60344 5.69816 5.75446 6.14119 6.23112 6.45701 6.64225 6.68426 6.93256 7.22400 8.76313 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.003620 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.694201 B = 7732.042518 C = 8738.627895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.106 3.894 3 N -0.489 5.489 4 C 0.088 3.912 5 C -0.153 4.153 6 C -0.085 4.085 7 C 0.071 3.929 8 N -0.625 5.625 9 C 0.528 3.472 10 O -0.490 6.490 11 C 0.493 3.507 12 O -0.556 6.556 13 N -0.569 5.569 14 C 0.044 3.956 15 C -0.123 4.123 16 C -0.101 4.101 17 C 0.006 3.994 18 H 0.019 0.981 19 C -0.514 4.514 20 H 0.050 0.950 21 C 0.026 3.974 22 N -0.937 5.937 23 Si 0.935 3.065 24 H -0.273 1.273 25 H -0.292 1.292 26 H -0.263 1.263 27 C 0.104 3.896 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.190 0.810 32 H 0.171 0.829 33 H 0.148 0.852 34 H 0.430 0.570 35 H 0.078 0.922 36 H 0.165 0.835 37 H 0.104 0.896 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.268 0.732 42 H 0.057 0.943 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.120 25.163 0.034 27.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.034 4.034 3 N -0.198 5.198 4 C -0.070 4.070 5 C -0.173 4.173 6 C -0.113 4.113 7 C -0.025 4.025 8 N -0.272 5.272 9 C 0.311 3.689 10 O -0.367 6.367 11 C 0.275 3.725 12 O -0.436 6.436 13 N -0.300 5.300 14 C -0.075 4.075 15 C -0.161 4.161 16 C -0.138 4.138 17 C -0.013 4.013 18 H 0.037 0.963 19 C -0.552 4.552 20 H 0.068 0.932 21 C -0.173 4.173 22 N -0.577 5.577 23 Si 0.764 3.236 24 H -0.200 1.200 25 H -0.219 1.219 26 H -0.188 1.188 27 C -0.018 4.018 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.206 0.794 32 H 0.188 0.812 33 H 0.166 0.834 34 H 0.270 0.730 35 H 0.096 0.904 36 H 0.180 0.820 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.639 25.796 -0.101 27.539 hybrid contribution -0.933 -1.252 0.650 1.691 sum 8.706 24.545 0.549 26.049 Atomic orbital electron populations 1.20804 0.87370 1.04231 1.04371 1.21440 0.98084 0.86568 0.97306 1.67603 1.11452 1.27622 1.13150 1.23343 0.88755 1.00263 0.94601 1.22413 1.03302 0.91487 1.00100 1.21954 0.92392 1.00821 0.96089 1.18725 0.92789 0.85338 1.05669 1.42991 1.26157 1.08067 1.50004 1.20008 0.85874 0.84450 0.78597 1.90253 1.20078 1.80525 1.45818 1.20146 0.86853 0.85342 0.80164 1.90754 1.18966 1.84481 1.49353 1.48399 1.19621 1.08102 1.53880 1.23558 0.80172 1.06175 0.97604 1.21959 0.99227 0.93630 1.01308 1.21479 0.95088 0.97262 0.99994 1.19408 0.94346 0.92020 0.95552 0.96293 1.21269 1.03662 0.96935 1.33339 0.93215 1.25699 0.97919 0.97083 0.96595 1.69993 1.17295 1.24325 1.46082 0.86079 0.79226 0.79306 0.79017 1.19962 1.21881 1.18780 1.22407 0.95788 0.81857 1.01712 0.88695 0.89363 0.90669 0.79359 0.81198 0.83396 0.72970 0.90389 0.81969 0.87808 0.92437 0.92408 0.92287 0.92267 0.92502 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 9.64 71.24 0.69 -1.01 16 2 C 0.11 2.07 6.80 42.72 0.29 2.36 16 3 N -0.49 -9.47 10.27 -183.35 -1.88 -11.35 16 4 C 0.09 1.26 11.18 84.70 0.95 2.20 16 5 C -0.15 -2.10 10.10 22.34 0.23 -1.87 16 6 C -0.09 -1.61 8.81 22.60 0.20 -1.41 16 7 C 0.07 1.47 6.30 38.30 0.24 1.71 16 8 N -0.63 -13.93 4.73 -304.53 -1.44 -15.37 16 9 C 0.53 14.15 7.67 87.24 0.67 14.82 16 10 O -0.49 -12.76 10.47 -3.32 -0.03 -12.80 16 11 C 0.49 16.90 7.75 87.24 0.68 17.57 16 12 O -0.56 -22.02 15.94 -3.29 -0.05 -22.08 16 13 N -0.57 -20.26 2.97 -820.60 -2.44 -22.70 16 14 C 0.04 1.24 6.27 86.36 0.54 1.78 16 15 C -0.12 -3.43 6.11 30.78 0.19 -3.24 16 16 C -0.10 -3.65 5.11 30.72 0.16 -3.49 16 17 C 0.01 0.29 1.84 -11.46 -0.02 0.27 16 18 H 0.02 0.91 7.21 -2.39 -0.02 0.89 16 19 C -0.51 -28.60 9.15 25.60 0.23 -28.37 16 20 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 21 C 0.03 1.50 5.45 84.66 0.46 1.97 16 22 N -0.94 -58.01 13.96 21.45 0.30 -57.71 16 23 Si 0.94 47.39 24.32 68.60 1.67 49.06 16 24 H -0.27 -13.80 6.92 99.48 0.69 -13.11 16 25 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 26 H -0.26 -13.03 6.53 99.48 0.65 -12.38 16 27 C 0.10 4.51 5.09 86.36 0.44 4.95 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.07 1.15 7.16 -2.39 -0.02 1.13 16 31 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.15 2.91 6.29 -2.91 -0.02 2.89 16 34 H 0.43 8.72 7.36 -92.71 -0.68 8.04 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.16 4.19 3.70 -86.07 -0.32 3.87 16 37 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 42 H 0.06 2.74 2.35 -2.38 -0.01 2.73 16 43 H 0.07 3.15 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -70.58 342.09 2.04 -68.54 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -0.01 Total: 16.17 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 5.94 Total: 8.23 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -5.46 Total: -107.13 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.09 Total: -34.87 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.67 Total: 49.06 kcal Total: -70.58 2.04 -68.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595082738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.431 kcal (2) G-P(sol) polarization free energy of solvation -70.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds