Wall clock time and date at job start Tue Mar 31 2020 11:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31815 * 119.67349 * 2 1 4 4 C 1.31861 * 121.79808 * 180.31389 * 3 2 1 5 5 C 1.38273 * 120.93434 * 359.68035 * 4 3 2 6 6 C 1.38485 * 119.24254 * 0.02562 * 5 4 3 7 7 C 1.38910 * 119.67189 * 179.73261 * 2 1 3 8 8 N 1.39753 * 120.49302 * 359.97438 * 7 2 1 9 9 C 1.34767 * 119.99612 * 154.64220 * 8 7 2 10 10 O 1.21380 * 120.00751 * 4.35003 * 9 8 7 11 11 C 1.49354 * 119.99691 * 184.34925 * 9 8 7 12 12 O 1.21364 * 120.00348 * 353.73410 * 11 9 8 13 13 N 1.34780 * 120.00359 * 173.72614 * 11 9 8 14 14 C 1.46935 * 120.62585 * 4.72571 * 13 11 9 15 15 C 1.53199 * 108.76993 * 233.62559 * 14 13 11 16 16 C 1.53039 * 109.34007 * 305.37965 * 15 14 13 17 17 C 1.53041 * 109.53782 * 61.31767 * 16 15 14 18 18 H 1.08992 * 109.49812 * 58.65478 * 17 16 15 19 19 C 1.50706 * 109.49386 * 178.71355 * 17 16 15 20 20 H 1.07997 * 119.99776 * 24.94559 * 19 17 16 21 21 C 1.37867 * 119.99918 * 205.21380 * 19 17 16 22 22 N 1.31513 * 120.00394 * 184.75255 * 21 19 17 23 23 Si 1.86810 * 119.99922 * 4.75812 * 21 19 17 24 24 H 1.48503 * 109.47137 * 94.96508 * 23 21 19 25 25 H 1.48499 * 109.46921 * 214.96192 * 23 21 19 26 26 H 1.48495 * 109.47036 * 334.96186 * 23 21 19 27 27 C 1.46919 * 120.63499 * 184.74142 * 13 11 9 28 28 H 1.09006 * 109.47113 * 270.26908 * 1 2 3 29 29 H 1.08998 * 109.46906 * 30.27058 * 1 2 3 30 30 H 1.09003 * 109.46973 * 150.26895 * 1 2 3 31 31 H 1.08001 * 119.52887 * 179.69841 * 4 3 2 32 32 H 1.08009 * 120.37720 * 180.02562 * 5 4 3 33 33 H 1.08001 * 120.81923 * 180.02562 * 6 5 4 34 34 H 0.97002 * 119.99793 * 334.64111 * 8 7 2 35 35 H 1.08995 * 109.58728 * 353.40649 * 14 13 11 36 36 H 1.08996 * 109.58789 * 113.69590 * 14 13 11 37 37 H 1.08996 * 109.49761 * 65.32007 * 15 14 13 38 38 H 1.09000 * 109.49603 * 185.41327 * 15 14 13 39 39 H 1.09003 * 109.43239 * 301.31147 * 16 15 14 40 40 H 1.08997 * 109.48534 * 181.35753 * 16 15 14 41 41 H 0.97003 * 120.00579 * 180.02562 * 22 21 19 42 42 H 1.09004 * 109.58806 * 6.58528 * 27 13 11 43 43 H 1.09008 * 109.70208 * 246.23130 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1596 1.1453 0.0000 4 6 3.4772 1.1942 -0.0061 5 6 4.2315 0.0353 -0.0063 6 6 3.5879 -1.1908 -0.0004 7 6 2.1946 -1.2069 0.0056 8 7 1.4994 -2.4192 0.0118 9 6 2.0789 -3.5308 -0.4828 10 8 3.2318 -3.4975 -0.8610 11 6 1.3025 -4.8040 -0.5658 12 8 0.1901 -4.8689 -0.0848 13 7 1.8370 -5.8810 -1.1748 14 6 3.2199 -5.8510 -1.6705 15 6 3.2227 -6.2545 -3.1484 16 6 2.5279 -7.6090 -3.3053 17 6 1.0752 -7.4964 -2.8374 18 1 0.5623 -6.7338 -3.4235 19 6 0.3832 -8.8224 -3.0218 20 1 0.9602 -9.7352 -3.0360 21 6 -0.9858 -8.8697 -3.1780 22 7 -1.6004 -10.0304 -3.2451 23 14 -1.9679 -7.2848 -3.2943 24 1 -2.1722 -6.9327 -4.7224 25 1 -3.2865 -7.4702 -2.6368 26 1 -1.2259 -6.1918 -2.6161 27 6 1.0480 -7.1070 -1.3561 28 1 -0.3634 0.0048 1.0277 29 1 -0.3633 0.8875 -0.5180 30 1 -0.3633 -0.8924 -0.5097 31 1 3.9743 2.1530 -0.0109 32 1 5.3104 0.0859 -0.0109 33 1 4.1519 -2.1119 0.0001 34 1 0.5997 -2.4605 0.3722 35 1 3.6238 -4.8441 -1.5659 36 1 3.8287 -6.5503 -1.0975 37 1 2.6902 -5.5032 -3.7316 38 1 4.2506 -6.3296 -3.5031 39 1 3.0468 -8.3546 -2.7028 40 1 2.5499 -7.9097 -4.3527 41 1 -2.5635 -10.0638 -3.3553 42 1 0.0189 -6.9288 -1.0440 43 1 1.4769 -7.9117 -0.7588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595082740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:49 Heat of formation + Delta-G solvation = -10.667476 kcal Electronic energy + Delta-G solvation = -26788.493205 eV Core-core repulsion = 23027.570565 eV Total energy + Delta-G solvation = -3760.922640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.59486 -40.25631 -38.68828 -37.29192 -35.69861 -33.42853 -33.21508 -31.97620 -31.20108 -30.54576 -27.99224 -26.38596 -25.26640 -24.35106 -22.78092 -22.12853 -21.92515 -20.49073 -19.19794 -18.18376 -17.55052 -16.99409 -16.71138 -16.40056 -16.16494 -16.01384 -15.21066 -14.84932 -14.40148 -14.27177 -14.12197 -13.97525 -13.67275 -13.51521 -13.17818 -12.78413 -12.65143 -12.60626 -12.55416 -12.33041 -12.23715 -11.76774 -11.41488 -11.17660 -10.84450 -10.68423 -10.51976 -10.24622 -9.92789 -9.82542 -9.73816 -9.57407 -9.28564 -8.76266 -8.64758 -8.57498 -8.25980 -6.18046 -4.19389 0.58420 0.97677 1.47712 2.16710 3.14348 3.25478 3.35788 3.41337 3.44915 3.53337 4.01539 4.19447 4.35798 4.39477 4.60118 4.79930 4.91187 5.13829 5.18890 5.26784 5.28327 5.36293 5.43579 5.56317 5.68016 5.73245 5.79996 5.92847 5.95560 6.11835 6.14470 6.28630 6.38941 6.43666 6.51682 6.55943 6.68135 6.74596 6.77916 7.16322 7.28597 7.47091 7.60649 7.64648 7.68228 8.05974 8.41817 8.87436 9.44599 10.94153 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.003587 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.684902 B = 7804.754843 C = 8718.348196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.107 3.893 3 N -0.466 5.466 4 C 0.081 3.919 5 C -0.158 4.158 6 C -0.088 4.088 7 C 0.095 3.905 8 N -0.636 5.636 9 C 0.516 3.484 10 O -0.491 6.491 11 C 0.497 3.503 12 O -0.528 6.528 13 N -0.562 5.562 14 C 0.045 3.955 15 C -0.133 4.133 16 C -0.106 4.106 17 C 0.007 3.993 18 H 0.033 0.967 19 C -0.515 4.515 20 H 0.077 0.923 21 C 0.076 3.924 22 N -0.893 5.893 23 Si 0.869 3.131 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.256 1.256 27 C 0.106 3.894 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.157 0.843 32 H 0.139 0.861 33 H 0.165 0.835 34 H 0.426 0.574 35 H 0.148 0.852 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.266 0.734 42 H 0.084 0.916 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.558 19.641 6.922 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.034 4.034 3 N -0.175 5.175 4 C -0.076 4.076 5 C -0.178 4.178 6 C -0.116 4.116 7 C -0.002 4.002 8 N -0.282 5.282 9 C 0.300 3.700 10 O -0.367 6.367 11 C 0.277 3.723 12 O -0.406 6.406 13 N -0.294 5.294 14 C -0.076 4.076 15 C -0.171 4.171 16 C -0.144 4.144 17 C -0.012 4.012 18 H 0.052 0.948 19 C -0.553 4.553 20 H 0.095 0.905 21 C -0.127 4.127 22 N -0.530 5.530 23 Si 0.696 3.304 24 H -0.204 1.204 25 H -0.212 1.212 26 H -0.180 1.180 27 C -0.014 4.014 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.175 0.825 32 H 0.157 0.843 33 H 0.183 0.817 34 H 0.266 0.734 35 H 0.164 0.836 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.080 20.194 6.871 23.592 hybrid contribution -0.532 -0.219 0.000 0.576 sum 9.547 19.975 6.871 23.181 Atomic orbital electron populations 1.20750 0.88487 1.04092 1.03487 1.21117 0.97111 0.86746 0.98453 1.67514 1.10280 1.27583 1.12145 1.22721 0.89267 0.98722 0.96907 1.22113 1.01718 0.92629 1.01346 1.22155 0.92566 1.00559 0.96279 1.18690 0.92528 0.85733 1.03297 1.43219 1.20066 1.06121 1.58772 1.20940 0.87059 0.85355 0.76604 1.90216 1.17279 1.82988 1.46247 1.19550 0.86603 0.84365 0.81734 1.90770 1.19332 1.83518 1.46966 1.48499 1.14981 1.13027 1.52865 1.23282 0.81379 1.07926 0.94990 1.21950 1.00550 0.99171 0.95479 1.21565 0.96891 0.94617 1.01297 1.19473 0.93623 0.97742 0.90402 0.94839 1.20902 0.92184 0.91870 1.50350 0.90520 1.25070 0.97757 0.95920 0.93997 1.69901 1.09678 1.24374 1.49000 0.86972 0.79969 0.84909 0.78586 1.20424 1.21163 1.18026 1.22820 0.95665 0.81966 1.00983 0.89958 0.89653 0.90696 0.82535 0.84289 0.81743 0.73429 0.83582 0.91700 0.92410 0.91590 0.92665 0.92167 0.92454 0.89752 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.62 36.01 0.35 -0.60 16 2 C 0.11 1.16 6.80 -82.35 -0.56 0.60 16 3 N -0.47 -5.17 10.27 -9.30 -0.10 -5.26 16 4 C 0.08 0.74 11.18 -17.53 -0.20 0.54 16 5 C -0.16 -1.38 10.10 -39.48 -0.40 -1.77 16 6 C -0.09 -0.95 8.91 -39.08 -0.35 -1.30 16 7 C 0.09 1.08 6.45 -83.59 -0.54 0.54 16 8 N -0.64 -7.52 4.95 -10.20 -0.05 -7.57 16 9 C 0.52 7.26 7.70 -11.63 -0.09 7.17 16 10 O -0.49 -6.85 9.95 5.47 0.05 -6.80 16 11 C 0.50 8.58 7.75 -11.63 -0.09 8.49 16 12 O -0.53 -10.29 15.92 5.48 0.09 -10.20 16 13 N -0.56 -10.10 2.97 -173.31 -0.52 -10.62 16 14 C 0.05 0.69 6.28 -3.70 -0.02 0.66 16 15 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 16 C -0.11 -1.99 5.15 -26.69 -0.14 -2.13 16 17 C 0.01 0.16 1.78 -91.65 -0.16 0.00 16 18 H 0.03 0.79 5.72 -51.93 -0.30 0.49 16 19 C -0.52 -13.79 8.87 -34.44 -0.31 -14.10 16 20 H 0.08 2.22 8.05 -52.49 -0.42 1.79 16 21 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 22 N -0.89 -26.62 13.96 55.43 0.77 -25.84 16 23 Si 0.87 21.42 26.43 -169.99 -4.49 16.93 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.26 -6.21 5.78 56.52 0.33 -5.89 16 27 C 0.11 2.23 5.40 -3.72 -0.02 2.21 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.62 6.99 -51.93 -0.36 0.25 16 31 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.17 1.84 5.59 -52.49 -0.29 1.55 16 34 H 0.43 4.51 6.92 -40.82 -0.28 4.23 16 35 H 0.15 2.10 3.70 -57.21 -0.21 1.89 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.08 1.96 5.53 -51.93 -0.29 1.67 16 43 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -31.46 344.06 -7.43 -38.89 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.60 Total: 5.18 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -2.78 Total: 0.10 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.11 Total: -49.30 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: 0.14 Total: -17.00 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.49 Total: 16.93 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.46 -7.43 -38.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595082740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.227 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds