Wall clock time and date at job start Tue Mar 31 2020 11:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31815 * 119.67349 * 2 1 4 4 C 1.31861 * 121.79808 * 180.31389 * 3 2 1 5 5 C 1.38273 * 120.93434 * 359.68035 * 4 3 2 6 6 C 1.38485 * 119.24254 * 0.02562 * 5 4 3 7 7 C 1.38910 * 119.67189 * 179.73261 * 2 1 3 8 8 N 1.39753 * 120.49302 * 359.97438 * 7 2 1 9 9 C 1.34767 * 119.99612 * 154.64220 * 8 7 2 10 10 O 1.21380 * 120.00751 * 4.35003 * 9 8 7 11 11 C 1.49354 * 119.99691 * 184.34925 * 9 8 7 12 12 O 1.21364 * 120.00348 * 353.73410 * 11 9 8 13 13 N 1.34780 * 120.00359 * 173.72614 * 11 9 8 14 14 C 1.46935 * 120.62585 * 4.72571 * 13 11 9 15 15 C 1.53199 * 108.76993 * 233.62559 * 14 13 11 16 16 C 1.53039 * 109.34007 * 305.37965 * 15 14 13 17 17 C 1.53041 * 109.53782 * 61.31767 * 16 15 14 18 18 H 1.08992 * 109.49812 * 58.65478 * 17 16 15 19 19 C 1.50706 * 109.49386 * 178.71355 * 17 16 15 20 20 H 1.07997 * 119.99776 * 24.94559 * 19 17 16 21 21 C 1.37867 * 119.99918 * 205.21380 * 19 17 16 22 22 N 1.31513 * 120.00394 * 184.75255 * 21 19 17 23 23 Si 1.86810 * 119.99922 * 4.75812 * 21 19 17 24 24 H 1.48503 * 109.47137 * 94.96508 * 23 21 19 25 25 H 1.48499 * 109.46921 * 214.96192 * 23 21 19 26 26 H 1.48495 * 109.47036 * 334.96186 * 23 21 19 27 27 C 1.46919 * 120.63499 * 184.74142 * 13 11 9 28 28 H 1.09006 * 109.47113 * 270.26908 * 1 2 3 29 29 H 1.08998 * 109.46906 * 30.27058 * 1 2 3 30 30 H 1.09003 * 109.46973 * 150.26895 * 1 2 3 31 31 H 1.08001 * 119.52887 * 179.69841 * 4 3 2 32 32 H 1.08009 * 120.37720 * 180.02562 * 5 4 3 33 33 H 1.08001 * 120.81923 * 180.02562 * 6 5 4 34 34 H 0.97002 * 119.99793 * 334.64111 * 8 7 2 35 35 H 1.08995 * 109.58728 * 353.40649 * 14 13 11 36 36 H 1.08996 * 109.58789 * 113.69590 * 14 13 11 37 37 H 1.08996 * 109.49761 * 65.32007 * 15 14 13 38 38 H 1.09000 * 109.49603 * 185.41327 * 15 14 13 39 39 H 1.09003 * 109.43239 * 301.31147 * 16 15 14 40 40 H 1.08997 * 109.48534 * 181.35753 * 16 15 14 41 41 H 0.97003 * 120.00579 * 180.02562 * 22 21 19 42 42 H 1.09004 * 109.58806 * 6.58528 * 27 13 11 43 43 H 1.09008 * 109.70208 * 246.23130 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1596 1.1453 0.0000 4 6 3.4772 1.1942 -0.0061 5 6 4.2315 0.0353 -0.0063 6 6 3.5879 -1.1908 -0.0004 7 6 2.1946 -1.2069 0.0056 8 7 1.4994 -2.4192 0.0118 9 6 2.0789 -3.5308 -0.4828 10 8 3.2318 -3.4975 -0.8610 11 6 1.3025 -4.8040 -0.5658 12 8 0.1901 -4.8689 -0.0848 13 7 1.8370 -5.8810 -1.1748 14 6 3.2199 -5.8510 -1.6705 15 6 3.2227 -6.2545 -3.1484 16 6 2.5279 -7.6090 -3.3053 17 6 1.0752 -7.4964 -2.8374 18 1 0.5623 -6.7338 -3.4235 19 6 0.3832 -8.8224 -3.0218 20 1 0.9602 -9.7352 -3.0360 21 6 -0.9858 -8.8697 -3.1780 22 7 -1.6004 -10.0304 -3.2451 23 14 -1.9679 -7.2848 -3.2943 24 1 -2.1722 -6.9327 -4.7224 25 1 -3.2865 -7.4702 -2.6368 26 1 -1.2259 -6.1918 -2.6161 27 6 1.0480 -7.1070 -1.3561 28 1 -0.3634 0.0048 1.0277 29 1 -0.3633 0.8875 -0.5180 30 1 -0.3633 -0.8924 -0.5097 31 1 3.9743 2.1530 -0.0109 32 1 5.3104 0.0859 -0.0109 33 1 4.1519 -2.1119 0.0001 34 1 0.5997 -2.4605 0.3722 35 1 3.6238 -4.8441 -1.5659 36 1 3.8287 -6.5503 -1.0975 37 1 2.6902 -5.5032 -3.7316 38 1 4.2506 -6.3296 -3.5031 39 1 3.0468 -8.3546 -2.7028 40 1 2.5499 -7.9097 -4.3527 41 1 -2.5635 -10.0638 -3.3553 42 1 0.0189 -6.9288 -1.0440 43 1 1.4769 -7.9117 -0.7588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595082740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:48 Heat of formation + Delta-G solvation = -31.955183 kcal Electronic energy + Delta-G solvation = -26789.416309 eV Core-core repulsion = 23027.570565 eV Total energy + Delta-G solvation = -3761.845744 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.63441 -41.28074 -39.87197 -38.73523 -36.71377 -35.18370 -34.01908 -33.61599 -32.21566 -32.02245 -28.76468 -27.73728 -26.98394 -25.43701 -23.82609 -23.47265 -22.96295 -21.70442 -20.69261 -19.43434 -18.85321 -18.58489 -17.84428 -17.44386 -17.17595 -17.12928 -16.40924 -16.24657 -15.71448 -15.70329 -15.20828 -15.10925 -14.98596 -14.72886 -14.54823 -14.29321 -14.01643 -13.76971 -13.42635 -13.27136 -13.22641 -13.05183 -12.90132 -12.59169 -12.37028 -12.29552 -12.04787 -11.75199 -11.63884 -11.38472 -11.12366 -10.77117 -10.68929 -10.58234 -9.95839 -9.77038 -9.37219 -8.36037 -6.39605 -0.32193 0.21069 0.43930 1.01142 1.26714 1.33254 1.42516 1.91546 2.27113 2.28983 2.76066 2.98452 3.02645 3.35498 3.65892 3.86765 3.96406 4.09210 4.12978 4.14119 4.26653 4.44912 4.52353 4.56195 4.59936 4.66049 4.67361 4.73493 4.80927 4.92834 5.00120 5.05463 5.11660 5.15935 5.20809 5.25204 5.36117 5.53560 5.58382 5.61718 5.73090 5.78011 6.19163 6.26809 6.46821 6.67719 6.73576 6.94497 7.27298 8.80068 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.003587 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.684902 B = 7804.754843 C = 8718.348196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.100 3.900 3 N -0.487 5.487 4 C 0.082 3.918 5 C -0.152 4.152 6 C -0.098 4.098 7 C 0.074 3.926 8 N -0.623 5.623 9 C 0.525 3.475 10 O -0.489 6.489 11 C 0.493 3.507 12 O -0.555 6.555 13 N -0.569 5.569 14 C 0.045 3.955 15 C -0.125 4.125 16 C -0.103 4.103 17 C 0.007 3.993 18 H 0.024 0.976 19 C -0.512 4.512 20 H 0.044 0.956 21 C 0.023 3.977 22 N -0.940 5.940 23 Si 0.929 3.071 24 H -0.270 1.270 25 H -0.287 1.287 26 H -0.252 1.252 27 C 0.116 3.884 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.188 0.812 32 H 0.170 0.830 33 H 0.161 0.839 34 H 0.431 0.569 35 H 0.163 0.837 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.267 0.733 42 H 0.059 0.941 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.550 22.789 7.198 26.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.040 4.040 3 N -0.197 5.197 4 C -0.075 4.075 5 C -0.172 4.172 6 C -0.126 4.126 7 C -0.023 4.023 8 N -0.268 5.268 9 C 0.309 3.691 10 O -0.366 6.366 11 C 0.275 3.725 12 O -0.434 6.434 13 N -0.300 5.300 14 C -0.074 4.074 15 C -0.163 4.163 16 C -0.141 4.141 17 C -0.013 4.013 18 H 0.042 0.958 19 C -0.550 4.550 20 H 0.062 0.938 21 C -0.175 4.175 22 N -0.580 5.580 23 Si 0.754 3.246 24 H -0.195 1.195 25 H -0.213 1.213 26 H -0.176 1.176 27 C -0.006 4.006 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.205 0.795 32 H 0.188 0.812 33 H 0.178 0.822 34 H 0.271 0.729 35 H 0.179 0.821 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.101 23.385 7.149 27.283 hybrid contribution -1.041 -1.145 -0.039 1.548 sum 11.059 22.239 7.110 25.835 Atomic orbital electron populations 1.20806 0.87404 1.04205 1.04419 1.21384 0.98047 0.86550 0.98050 1.67589 1.11465 1.27611 1.13005 1.23316 0.88783 1.00276 0.95161 1.22435 1.03272 0.91570 0.99874 1.22275 0.92389 1.01373 0.96546 1.18808 0.92987 0.85354 1.05115 1.43035 1.20189 1.05753 1.57859 1.20120 0.86760 0.84736 0.77528 1.90194 1.16869 1.82785 1.46750 1.20072 0.86443 0.85201 0.80734 1.90751 1.20681 1.84150 1.47855 1.48447 1.15788 1.12278 1.53470 1.23529 0.79838 1.09307 0.94769 1.21908 1.02010 0.96520 0.95834 1.21486 0.94708 0.97063 1.00828 1.19418 0.95589 0.94863 0.91439 0.95752 1.21182 0.92112 0.92871 1.48860 0.93769 1.25791 0.98993 0.98540 0.94209 1.70023 1.10048 1.26457 1.51425 0.86022 0.78356 0.81441 0.78818 1.19510 1.21319 1.17597 1.22268 0.94995 0.83678 0.99613 0.88609 0.89368 0.90696 0.79515 0.81244 0.82165 0.72889 0.82110 0.90279 0.92788 0.88105 0.92451 0.92645 0.92393 0.92268 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 9.62 71.24 0.69 -1.04 16 2 C 0.10 1.98 6.80 42.72 0.29 2.27 16 3 N -0.49 -9.66 10.27 -183.34 -1.88 -11.54 16 4 C 0.08 1.22 11.18 84.70 0.95 2.16 16 5 C -0.15 -2.13 10.10 22.34 0.23 -1.91 16 6 C -0.10 -1.88 8.91 22.59 0.20 -1.68 16 7 C 0.07 1.54 6.45 38.30 0.25 1.79 16 8 N -0.62 -13.77 4.95 -304.53 -1.51 -15.28 16 9 C 0.52 13.86 7.70 87.24 0.67 14.53 16 10 O -0.49 -12.43 9.95 -3.34 -0.03 -12.46 16 11 C 0.49 16.53 7.75 87.24 0.68 17.20 16 12 O -0.55 -21.44 15.92 -3.29 -0.05 -21.49 16 13 N -0.57 -19.74 2.97 -820.57 -2.44 -22.18 16 14 C 0.05 1.25 6.28 86.36 0.54 1.79 16 15 C -0.12 -3.52 6.08 30.67 0.19 -3.34 16 16 C -0.10 -3.76 5.15 30.62 0.16 -3.60 16 17 C 0.01 0.29 1.78 -11.46 -0.02 0.27 16 18 H 0.02 1.14 5.72 -2.39 -0.01 1.12 16 19 C -0.51 -28.19 8.87 25.60 0.23 -27.96 16 20 H 0.04 2.66 8.05 -2.91 -0.02 2.64 16 21 C 0.02 1.33 5.47 84.65 0.46 1.80 16 22 N -0.94 -57.92 13.96 21.44 0.30 -57.62 16 23 Si 0.93 45.22 26.43 68.60 1.81 47.03 16 24 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 26 H -0.25 -11.99 5.78 99.48 0.57 -11.42 16 27 C 0.12 4.90 5.40 86.36 0.47 5.36 16 28 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.14 6.99 -2.39 -0.02 1.12 16 31 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 33 H 0.16 3.19 5.59 -2.91 -0.02 3.17 16 34 H 0.43 8.63 6.92 -92.71 -0.64 7.99 16 35 H 0.16 4.11 3.70 -85.97 -0.32 3.79 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.06 2.78 5.53 -2.39 -0.01 2.77 16 43 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 Total: -1.00 -69.46 344.06 2.14 -67.32 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -0.03 Total: 18.55 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 5.97 Total: 7.67 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -5.53 Total: -106.62 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.09 Total: -33.95 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.81 Total: 47.03 kcal Total: -69.46 2.14 -67.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595082740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.368 kcal (2) G-P(sol) polarization free energy of solvation -69.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds