Wall clock time and date at job start Tue Mar 31 2020 12:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38535 * 120.82158 * 2 1 4 4 C 1.38241 * 119.24494 * 179.97438 * 3 2 1 5 5 N 1.31890 * 120.92955 * 359.97438 * 4 3 2 6 6 C 1.31776 * 121.80523 * 0.02562 * 5 4 3 7 7 C 1.38949 * 120.65602 * 0.02562 * 6 5 4 8 8 N 1.39744 * 120.49619 * 180.02562 * 7 6 5 9 9 C 1.34778 * 120.00143 * 24.71289 * 8 7 6 10 10 O 1.21373 * 119.99783 * 5.67799 * 9 8 7 11 11 C 1.49354 * 120.00015 * 185.67898 * 9 8 7 12 12 O 1.21360 * 120.00324 * 6.10968 * 11 9 8 13 13 N 1.34777 * 119.99625 * 186.10778 * 11 9 8 14 14 C 1.46919 * 120.63502 * 355.17174 * 13 11 9 15 15 C 1.53194 * 108.77729 * 126.36435 * 14 13 11 16 16 C 1.53042 * 109.30956 * 54.63861 * 15 14 13 17 17 C 1.53041 * 109.54006 * 298.63427 * 16 15 14 18 18 H 1.09002 * 109.49519 * 301.38245 * 17 16 15 19 19 C 1.50697 * 109.49903 * 181.31776 * 17 16 15 20 20 H 1.07992 * 120.00194 * 359.97438 * 19 17 16 21 21 C 1.37881 * 119.99749 * 180.02562 * 19 17 16 22 22 N 1.31519 * 119.99994 * 359.97438 * 21 19 17 23 23 Si 1.86793 * 119.99842 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47364 * 90.00071 * 23 21 19 25 25 H 1.48499 * 109.47481 * 209.99570 * 23 21 19 26 26 H 1.48502 * 109.47286 * 330.00070 * 23 21 19 27 27 C 1.46934 * 120.62751 * 174.89011 * 13 11 9 28 28 H 1.08998 * 109.46894 * 89.99985 * 1 2 3 29 29 H 1.08996 * 109.46845 * 209.99818 * 1 2 3 30 30 H 1.09003 * 109.47138 * 330.00217 * 1 2 3 31 31 H 1.08004 * 120.37506 * 359.95766 * 3 2 1 32 32 H 1.08002 * 119.53199 * 180.02562 * 4 3 2 33 33 H 1.07997 * 119.67482 * 179.97438 * 6 5 4 34 34 H 0.97001 * 120.00200 * 204.71077 * 8 7 6 35 35 H 1.08993 * 109.58937 * 246.15376 * 14 13 11 36 36 H 1.09003 * 109.58470 * 6.43798 * 14 13 11 37 37 H 1.08998 * 109.49612 * 174.58597 * 15 14 13 38 38 H 1.08994 * 109.50189 * 294.68909 * 15 14 13 39 39 H 1.09003 * 109.46128 * 58.65423 * 16 15 14 40 40 H 1.09001 * 109.46165 * 178.62420 * 16 15 14 41 41 H 0.97004 * 119.99756 * 180.02562 * 22 21 19 42 42 H 1.09000 * 109.58465 * 353.42189 * 27 13 11 43 43 H 1.08999 * 109.58233 * 113.84221 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1897 0.0000 4 6 3.5987 1.1517 0.0005 5 7 4.2452 0.0021 0.0016 6 6 3.6095 -1.1522 0.0016 7 6 2.2208 -1.1962 0.0000 8 7 1.5500 -2.4222 0.0006 9 6 2.1562 -3.5218 0.4905 10 8 3.2422 -3.4289 1.0245 11 6 1.4916 -4.8544 0.3763 12 8 0.4603 -4.9662 -0.2536 13 7 2.0373 -5.9328 0.9728 14 6 3.3380 -5.8363 1.6490 15 6 3.1889 -6.3582 3.0816 16 6 2.6019 -7.7711 3.0469 17 6 1.2155 -7.7337 2.3998 18 1 0.5678 -7.0640 2.9657 19 6 0.6249 -9.1201 2.3954 20 1 1.1823 -9.9458 2.8120 21 6 -0.6269 -9.3344 1.8584 22 7 -1.3056 -8.3288 1.3506 23 14 -1.3588 -11.0529 1.8523 24 1 -2.1312 -11.2665 3.1026 25 1 -2.2604 -11.2029 0.6820 26 1 -0.2668 -12.0557 1.7677 27 6 1.3396 -7.2259 0.9644 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6965 2.1361 -0.0007 32 1 4.1567 2.0764 0.0010 33 1 4.1736 -2.0732 0.0020 34 1 0.6482 -2.4818 -0.3515 35 1 4.0729 -6.4387 1.1153 36 1 3.6632 -4.7961 1.6689 37 1 4.1662 -6.3820 3.5636 38 1 2.5228 -5.7011 3.6407 39 1 3.2560 -8.4220 2.4667 40 1 2.5175 -8.1543 4.0639 41 1 -2.1864 -8.4795 0.9732 42 1 0.3456 -7.1020 0.5348 43 1 1.9083 -7.9440 0.3735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595083315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:47 Heat of formation + Delta-G solvation = -34.537680 kcal Electronic energy + Delta-G solvation = -26688.249580 eV Core-core repulsion = 22926.291851 eV Total energy + Delta-G solvation = -3761.957730 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.58674 -41.20055 -39.76726 -38.63576 -36.79781 -35.24756 -34.40063 -33.49457 -31.62831 -31.30152 -28.87450 -27.71486 -26.90708 -25.37147 -23.90572 -23.47068 -22.88193 -21.75952 -20.61453 -19.16674 -18.68735 -18.36691 -17.68228 -17.39606 -17.21072 -16.96243 -16.51086 -16.22410 -15.63805 -15.55068 -15.09787 -15.02247 -14.80871 -14.61837 -14.46361 -14.06202 -13.84523 -13.79398 -13.66458 -13.51924 -13.11261 -12.88969 -12.65513 -12.49345 -12.31266 -12.24193 -12.17124 -11.74642 -11.66495 -11.18778 -11.00146 -10.56299 -10.54694 -10.36315 -10.05995 -9.63694 -9.40012 -8.13483 -6.29461 -0.29060 0.19703 0.50010 1.08992 1.41724 1.42724 1.53006 1.98424 2.35945 2.43348 2.80125 3.06579 3.16298 3.60998 3.65039 3.75772 3.95564 4.04480 4.15831 4.20455 4.34898 4.53684 4.57550 4.60589 4.71088 4.72513 4.79438 4.83980 4.93000 5.04256 5.09813 5.14728 5.16607 5.21399 5.24355 5.33627 5.44187 5.55571 5.73486 5.76767 5.84618 5.92679 6.26289 6.35078 6.51798 6.78628 6.86336 7.00122 7.40383 8.90586 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023781 B = 0.003163 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.130317 B = 8850.939377 C = 9713.157223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.067 4.067 3 C -0.143 4.143 4 C 0.077 3.923 5 N -0.495 5.495 6 C 0.077 3.923 7 C 0.073 3.927 8 N -0.623 5.623 9 C 0.524 3.476 10 O -0.493 6.493 11 C 0.492 3.508 12 O -0.552 6.552 13 N -0.568 5.568 14 C 0.044 3.956 15 C -0.123 4.123 16 C -0.107 4.107 17 C 0.039 3.961 18 H -0.009 1.009 19 C -0.536 4.536 20 H 0.062 0.938 21 C 0.012 3.988 22 N -0.914 5.914 23 Si 0.958 3.042 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.264 1.264 27 C 0.121 3.879 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.178 0.822 32 H 0.188 0.812 33 H 0.160 0.840 34 H 0.430 0.570 35 H 0.075 0.925 36 H 0.159 0.841 37 H 0.098 0.902 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.262 0.738 42 H 0.087 0.913 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.857 19.447 -2.861 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.077 4.077 3 C -0.163 4.163 4 C -0.080 4.080 5 N -0.205 5.205 6 C -0.081 4.081 7 C -0.024 4.024 8 N -0.269 5.269 9 C 0.308 3.692 10 O -0.370 6.370 11 C 0.273 3.727 12 O -0.431 6.431 13 N -0.299 5.299 14 C -0.076 4.076 15 C -0.161 4.161 16 C -0.145 4.145 17 C 0.020 3.980 18 H 0.009 0.991 19 C -0.574 4.574 20 H 0.080 0.920 21 C -0.187 4.187 22 N -0.552 5.552 23 Si 0.784 3.216 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.189 1.189 27 C -0.001 4.001 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.196 0.804 32 H 0.205 0.795 33 H 0.177 0.823 34 H 0.270 0.730 35 H 0.093 0.907 36 H 0.175 0.825 37 H 0.116 0.884 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.814 19.393 -2.911 21.110 hybrid contribution -2.079 -1.471 -0.188 2.554 sum 5.735 17.923 -3.099 19.071 Atomic orbital electron populations 1.20914 0.87999 1.04554 1.04375 1.20510 0.98297 0.91007 0.97894 1.22312 0.95011 0.98908 1.00022 1.23404 0.92829 0.96555 0.95207 1.67763 1.41350 0.98724 1.12616 1.23072 0.90323 0.97436 0.97275 1.18919 0.93318 0.85272 1.04855 1.43039 1.19768 1.05464 1.58635 1.20240 0.85478 0.85495 0.77994 1.90238 1.21051 1.84201 1.41478 1.20017 0.85252 0.85696 0.81702 1.90761 1.24643 1.85617 1.42114 1.48479 1.21507 1.09508 1.50413 1.23465 0.82628 1.08843 0.92701 1.21862 1.01832 0.96231 0.96149 1.21566 0.96468 0.96331 1.00141 1.18829 0.92959 0.94989 0.91201 0.99095 1.21472 1.01769 0.94568 1.39587 0.91980 1.25857 0.97496 1.00678 0.94684 1.70033 1.12949 1.32295 1.39939 0.85547 0.78384 0.80184 0.77508 1.20176 1.21128 1.18873 1.21926 0.97339 0.80278 1.00528 0.88655 0.92021 0.88002 0.80430 0.79485 0.82269 0.73007 0.90716 0.82515 0.88359 0.93409 0.92435 0.92799 0.92892 0.89430 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 9.53 71.24 0.68 -0.81 16 2 C -0.07 -1.16 5.93 -19.54 -0.12 -1.27 16 3 C -0.14 -1.89 9.81 22.34 0.22 -1.67 16 4 C 0.08 1.27 11.18 84.68 0.95 2.22 16 5 N -0.49 -12.00 10.35 -195.27 -2.02 -14.02 16 6 C 0.08 2.04 9.90 84.87 0.84 2.88 16 7 C 0.07 1.72 6.43 38.30 0.25 1.97 16 8 N -0.62 -16.14 5.00 -304.53 -1.52 -17.66 16 9 C 0.52 16.57 7.62 87.24 0.66 17.24 16 10 O -0.49 -15.55 10.20 -3.32 -0.03 -15.58 16 11 C 0.49 19.45 7.75 87.24 0.68 20.13 16 12 O -0.55 -25.01 15.94 -3.28 -0.05 -25.06 16 13 N -0.57 -23.30 2.98 -821.43 -2.45 -25.75 16 14 C 0.04 1.46 6.28 86.36 0.54 2.00 16 15 C -0.12 -4.07 6.08 30.67 0.19 -3.88 16 16 C -0.11 -4.28 5.11 30.62 0.16 -4.13 16 17 C 0.04 1.98 2.24 -11.61 -0.03 1.95 16 18 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 19 C -0.54 -29.09 8.56 25.60 0.22 -28.87 16 20 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 21 C 0.01 0.69 5.30 84.65 0.45 1.14 16 22 N -0.91 -53.52 11.39 21.45 0.24 -53.28 16 23 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 25 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 26 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 27 C 0.12 5.92 5.36 86.22 0.46 6.39 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.92 7.10 -2.39 -0.02 0.90 16 30 H 0.10 0.80 8.10 -2.39 -0.02 0.78 16 31 H 0.18 0.94 8.06 -2.91 -0.02 0.91 16 32 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.16 4.57 5.80 -2.91 -0.02 4.55 16 34 H 0.43 10.16 7.04 -92.71 -0.65 9.51 16 35 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.16 4.98 3.70 -86.23 -0.32 4.66 16 37 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.09 5.00 5.15 -2.39 -0.01 4.99 16 43 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -68.95 348.00 2.43 -66.52 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.09 Total: 24.14 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 6.15 Total: 15.27 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -5.75 Total: -110.70 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -0.09 Total: -40.64 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -68.95 2.43 -66.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595083315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.978 kcal (2) G-P(sol) polarization free energy of solvation -68.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds