Wall clock time and date at job start Tue Mar 31 2020 11:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38281 * 119.53818 * 2 1 4 4 C 1.38482 * 119.24508 * 180.02562 * 3 2 1 5 5 C 1.39337 * 118.35513 * 359.97438 * 4 3 2 6 6 N 1.39751 * 120.49313 * 180.02562 * 5 4 3 7 7 C 1.34768 * 119.99946 * 325.42433 * 6 5 4 8 8 O 1.21371 * 120.00272 * 4.44516 * 7 6 5 9 9 C 1.49363 * 120.00144 * 184.44719 * 7 6 5 10 10 O 1.21363 * 119.99533 * 353.30371 * 9 7 6 11 11 N 1.34769 * 120.00078 * 173.30464 * 9 7 6 12 12 C 1.46927 * 120.63432 * 1.15448 * 11 9 7 13 13 C 1.53192 * 108.77405 * 233.62953 * 12 11 9 14 14 C 1.53034 * 109.33991 * 305.37314 * 13 12 11 15 15 C 1.53050 * 109.53537 * 61.31918 * 14 13 12 16 16 H 1.08997 * 109.49537 * 58.65109 * 15 14 13 17 17 C 1.50702 * 109.49561 * 178.71453 * 15 14 13 18 18 H 1.08002 * 119.99997 * 25.49769 * 17 15 14 19 19 C 1.37874 * 119.99859 * 205.76498 * 17 15 14 20 20 N 1.31512 * 119.99860 * 184.95706 * 19 17 15 21 21 Si 1.86797 * 120.00064 * 4.96117 * 19 17 15 22 22 H 1.48501 * 109.47233 * 94.68515 * 21 19 17 23 23 H 1.48503 * 109.47387 * 214.68304 * 21 19 17 24 24 H 1.48498 * 109.47146 * 334.68339 * 21 19 17 25 25 C 1.46928 * 120.63199 * 181.17051 * 11 9 7 26 26 C 1.38906 * 119.01234 * 0.27939 * 5 4 3 27 27 N 1.31808 * 120.65416 * 359.45207 * 26 5 4 28 28 H 1.08994 * 109.46869 * 89.99634 * 1 2 3 29 29 H 1.08998 * 109.46969 * 210.00075 * 1 2 3 30 30 H 1.08998 * 109.46876 * 329.99992 * 1 2 3 31 31 H 1.07997 * 120.37442 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.82513 * 180.02562 * 4 3 2 33 33 H 0.97007 * 120.00039 * 145.42803 * 6 5 4 34 34 H 1.09000 * 109.58379 * 353.41475 * 12 11 9 35 35 H 1.08995 * 109.59176 * 113.83641 * 12 11 9 36 36 H 1.08998 * 109.49806 * 65.31543 * 13 12 11 37 37 H 1.09005 * 109.49256 * 185.41015 * 13 12 11 38 38 H 1.08994 * 109.43337 * 301.31791 * 14 13 12 39 39 H 1.08999 * 109.48636 * 181.35357 * 14 13 12 40 40 H 0.97004 * 119.99539 * 179.97438 * 20 19 17 41 41 H 1.09007 * 109.58213 * 6.58142 * 25 11 9 42 42 H 1.08994 * 109.70518 * 246.23410 * 25 11 9 43 43 H 1.08007 * 119.67125 * 179.72812 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2031 0.0000 4 6 3.5736 1.1960 -0.0005 5 6 4.2291 -0.0336 -0.0005 6 7 5.6253 -0.0928 -0.0005 7 6 6.3393 0.8387 -0.6629 8 8 5.7744 1.7739 -1.1914 9 6 7.8259 0.7203 -0.7466 10 8 8.4020 -0.1438 -0.1186 11 7 8.5274 1.5729 -1.5194 12 6 7.8467 2.6399 -2.2656 13 6 8.2454 2.5411 -3.7414 14 6 9.7712 2.5683 -3.8571 15 6 10.3622 1.3674 -3.1148 16 1 9.9633 0.4457 -3.5384 17 6 11.8626 1.3776 -3.2559 18 1 12.3819 2.3077 -3.4339 19 6 12.5717 0.1989 -3.1631 20 7 13.8865 0.2188 -3.1884 21 14 11.6652 -1.4263 -3.0016 22 1 11.5001 -2.0367 -4.3452 23 1 12.4455 -2.3443 -2.1334 24 1 10.3292 -1.1900 -2.3977 25 6 9.9874 1.4529 -1.6320 26 6 3.4741 -1.1995 -0.0059 27 7 2.1570 -1.1473 -0.0001 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6474 2.1375 0.0004 32 1 4.1317 2.1206 -0.0001 33 1 6.0806 -0.8045 0.4762 34 1 6.7674 2.5213 -2.1700 35 1 8.1460 3.6106 -1.8704 36 1 7.8659 1.6086 -4.1592 37 1 7.8240 3.3839 -4.2893 38 1 10.1518 3.4901 -3.4173 39 1 10.0571 2.5223 -4.9079 40 1 14.3854 -0.6105 -3.1228 41 1 10.3206 0.5511 -1.1182 42 1 10.4634 2.3253 -1.1845 43 1 3.9712 -2.1584 -0.0104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595086655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:53 Heat of formation + Delta-G solvation = -15.727754 kcal Electronic energy + Delta-G solvation = -26424.250506 eV Core-core repulsion = 22663.108436 eV Total energy + Delta-G solvation = -3761.142070 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.47766 -40.27512 -38.70267 -37.26814 -35.74689 -33.34628 -32.63089 -32.05536 -31.93461 -30.54099 -27.92347 -26.05560 -25.23726 -24.03623 -23.55193 -21.94422 -21.90146 -20.44327 -19.18670 -18.11581 -17.52835 -16.92262 -16.74341 -16.50480 -16.17505 -15.84026 -15.20202 -14.77928 -14.39481 -14.29494 -14.17446 -13.94795 -13.66055 -13.48102 -13.25102 -12.87663 -12.64133 -12.58451 -12.57621 -12.37491 -12.26679 -11.81642 -11.18565 -11.13261 -10.83835 -10.68435 -10.51622 -10.22085 -9.99708 -9.89400 -9.72487 -9.58929 -9.27865 -8.81005 -8.63574 -8.60113 -8.25096 -6.17218 -4.18490 0.57644 0.96067 1.45364 2.19914 3.16033 3.26621 3.36981 3.43150 3.44621 3.51569 4.02820 4.22657 4.37011 4.44572 4.56149 4.66885 4.89544 5.14606 5.22868 5.24641 5.28009 5.37325 5.43827 5.50103 5.66130 5.73476 5.79696 5.84449 5.96224 6.12430 6.14196 6.26679 6.37580 6.44251 6.51511 6.56900 6.68922 6.75318 6.79002 7.17257 7.29443 7.49252 7.61884 7.64626 7.67400 8.08294 8.42623 8.88189 9.45516 10.94911 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023676 B = 0.003139 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.334203 B = 8919.280803 C = 9580.975580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.108 3.892 3 C -0.152 4.152 4 C -0.073 4.073 5 C 0.086 3.914 6 N -0.641 5.641 7 C 0.516 3.484 8 O -0.494 6.494 9 C 0.497 3.503 10 O -0.528 6.528 11 N -0.563 5.563 12 C 0.049 3.951 13 C -0.134 4.134 14 C -0.106 4.106 15 C 0.007 3.993 16 H 0.034 0.966 17 C -0.515 4.515 18 H 0.077 0.923 19 C 0.075 3.925 20 N -0.893 5.893 21 Si 0.869 3.131 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.255 1.255 25 C 0.106 3.894 26 C 0.089 3.911 27 N -0.466 5.466 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.139 0.861 32 H 0.153 0.847 33 H 0.427 0.573 34 H 0.145 0.855 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.265 0.735 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.243 2.097 6.544 25.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.030 4.030 3 C -0.172 4.172 4 C -0.101 4.101 5 C -0.010 4.010 6 N -0.288 5.288 7 C 0.300 3.700 8 O -0.369 6.369 9 C 0.277 3.723 10 O -0.406 6.406 11 N -0.294 5.294 12 C -0.072 4.072 13 C -0.173 4.173 14 C -0.144 4.144 15 C -0.013 4.013 16 H 0.052 0.948 17 C -0.553 4.553 18 H 0.095 0.905 19 C -0.128 4.128 20 N -0.529 5.529 21 Si 0.696 3.304 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.179 1.179 25 C -0.014 4.014 26 C -0.071 4.071 27 N -0.176 5.176 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.265 0.735 34 H 0.161 0.839 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -24.541 1.434 6.488 25.424 hybrid contribution 0.689 -0.451 0.202 0.848 sum -23.851 0.983 6.689 24.791 Atomic orbital electron populations 1.20687 0.88635 1.03436 1.03130 1.21325 0.97211 0.88316 0.96128 1.21912 0.94069 0.99439 1.01811 1.21793 0.94459 0.98053 0.95792 1.18841 0.83215 0.95607 1.03349 1.43153 1.04117 1.30711 1.50857 1.20898 0.89458 0.81998 0.77608 1.90316 1.71691 1.30849 1.44067 1.19571 0.86534 0.83677 0.82470 1.90772 1.70470 1.34576 1.44777 1.48498 1.09664 1.29090 1.42192 1.23208 1.02718 0.89534 0.91708 1.21969 0.98465 1.01470 0.95356 1.21567 0.92231 0.99595 1.00976 1.19478 0.97061 0.94910 0.89833 0.94791 1.20898 0.88651 0.95718 1.50034 0.90539 1.25075 0.94689 0.99111 0.93904 1.69906 1.05809 1.27825 1.49395 0.86968 0.81102 0.83968 0.78408 1.20437 1.21196 1.17934 1.22804 0.74266 1.02750 1.01604 1.22646 0.89353 0.97052 0.98067 1.67517 1.08563 1.29246 1.12250 0.90403 0.90491 0.90694 0.84295 0.82987 0.73468 0.83859 0.91662 0.92421 0.91582 0.92666 0.92163 0.92473 0.89723 0.91138 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 10.17 36.01 0.37 -0.26 16 2 C 0.11 1.01 6.78 -82.56 -0.56 0.45 16 3 C -0.15 -1.34 9.73 -39.48 -0.38 -1.73 16 4 C -0.07 -0.77 8.81 -39.08 -0.34 -1.12 16 5 C 0.09 0.94 6.32 -83.59 -0.53 0.42 16 6 N -0.64 -7.38 5.34 -10.20 -0.05 -7.43 16 7 C 0.52 7.26 7.66 -11.63 -0.09 7.18 16 8 O -0.49 -7.01 10.48 5.48 0.06 -6.95 16 9 C 0.50 8.63 7.76 -11.63 -0.09 8.54 16 10 O -0.53 -10.38 15.91 5.49 0.09 -10.29 16 11 N -0.56 -10.19 2.97 -173.31 -0.52 -10.71 16 12 C 0.05 0.76 6.22 -3.71 -0.02 0.74 16 13 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 14 C -0.11 -2.00 5.15 -26.69 -0.14 -2.14 16 15 C 0.01 0.15 1.78 -91.65 -0.16 -0.01 16 16 H 0.03 0.81 5.68 -51.93 -0.29 0.51 16 17 C -0.52 -13.84 8.87 -34.44 -0.31 -14.15 16 18 H 0.08 2.22 8.05 -52.49 -0.42 1.79 16 19 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 20 N -0.89 -26.68 13.96 55.43 0.77 -25.90 16 21 Si 0.87 21.54 26.46 -169.99 -4.50 17.04 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 H -0.26 -6.25 5.82 56.52 0.33 -5.92 16 25 C 0.11 2.24 5.43 -3.71 -0.02 2.22 16 26 C 0.09 0.92 11.13 -17.31 -0.19 0.72 16 27 N -0.47 -5.11 10.26 -9.29 -0.10 -5.21 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.15 1.65 6.30 -52.49 -0.33 1.32 16 33 H 0.43 4.30 8.31 -40.82 -0.34 3.96 16 34 H 0.15 2.10 3.80 -56.96 -0.22 1.89 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.08 1.98 5.61 -51.92 -0.29 1.69 16 42 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 43 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -31.79 348.12 -7.48 -39.27 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.75 Total: 4.32 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -2.73 Total: 0.61 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.11 Total: -49.25 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.14 Total: -17.24 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.50 Total: 17.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.79 -7.48 -39.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.542 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds