Wall clock time and date at job start Tue Mar 31 2020 11:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38275 * 120.38301 * 2 1 4 4 N 1.31867 * 120.93388 * 180.02562 * 3 2 1 5 5 C 1.31800 * 121.80216 * 359.96765 * 4 3 2 6 6 C 1.38903 * 120.65546 * 359.97438 * 5 4 3 7 7 N 1.39758 * 120.49668 * 180.02562 * 6 5 4 8 8 C 1.34779 * 120.00103 * 145.04002 * 7 6 5 9 9 O 1.21374 * 119.99870 * 4.72263 * 8 7 6 10 10 C 1.49351 * 119.99706 * 184.71677 * 8 7 6 11 11 O 1.21359 * 120.00265 * 6.26006 * 10 8 7 12 12 N 1.34777 * 119.99832 * 186.25402 * 10 8 7 13 13 C 1.46924 * 120.63091 * 355.25234 * 12 10 8 14 14 C 1.53193 * 108.89469 * 126.46091 * 13 12 10 15 15 C 1.53033 * 109.31599 * 54.56209 * 14 13 12 16 16 C 1.53045 * 109.53767 * 298.63783 * 15 14 13 17 17 H 1.08991 * 109.49643 * 301.38020 * 16 15 14 18 18 C 1.50703 * 109.49523 * 181.31355 * 16 15 14 19 19 H 1.07996 * 120.00192 * 359.97438 * 18 16 15 20 20 C 1.37874 * 119.99721 * 179.97438 * 18 16 15 21 21 N 1.31509 * 120.00255 * 180.02562 * 20 18 16 22 22 Si 1.86804 * 120.00097 * 359.97438 * 20 18 16 23 23 H 1.48499 * 109.47156 * 89.99816 * 22 20 18 24 24 H 1.48496 * 109.47158 * 209.99998 * 22 20 18 25 25 H 1.48503 * 109.47118 * 330.00186 * 22 20 18 26 26 C 1.46961 * 120.65361 * 175.06332 * 12 10 8 27 27 C 1.38494 * 120.37683 * 180.24907 * 2 1 3 28 28 H 1.09000 * 109.47013 * 89.99983 * 1 2 3 29 29 H 1.08997 * 109.47069 * 210.00545 * 1 2 3 30 30 H 1.08996 * 109.46957 * 330.00548 * 1 2 3 31 31 H 1.08008 * 119.53142 * 0.02562 * 3 2 1 32 32 H 1.07996 * 119.67361 * 180.02562 * 5 4 3 33 33 H 0.97002 * 119.99535 * 325.04875 * 7 6 5 34 34 H 1.08996 * 109.59092 * 6.59778 * 13 12 10 35 35 H 1.09007 * 109.58572 * 246.31762 * 13 12 10 36 36 H 1.09007 * 109.49826 * 174.51950 * 14 13 12 37 37 H 1.09001 * 109.49398 * 294.60847 * 14 13 12 38 38 H 1.09003 * 109.46248 * 58.65192 * 15 14 13 39 39 H 1.09000 * 109.46544 * 178.62853 * 15 14 13 40 40 H 0.97002 * 120.00359 * 179.97438 * 21 20 18 41 41 H 1.09006 * 109.46319 * 113.75767 * 26 12 10 42 42 H 1.08998 * 109.71532 * 353.46828 * 26 12 10 43 43 H 1.07999 * 120.82143 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.1929 0.0000 4 7 3.5250 1.2055 -0.0005 5 6 4.2303 0.0921 -0.0004 6 6 3.5999 -1.1456 0.0008 7 7 4.3510 -2.3241 0.0014 8 6 3.9068 -3.4061 0.6713 9 8 2.8154 -3.3854 1.2020 10 6 4.7575 -4.6304 0.7603 11 8 5.8918 -4.6139 0.3292 12 7 4.2654 -5.7536 1.3195 13 6 2.9331 -5.7599 1.9388 14 6 2.1068 -6.8953 1.3266 15 6 2.8724 -8.2126 1.4698 16 6 4.1992 -8.1183 0.7129 17 1 4.0043 -7.9014 -0.3373 18 6 4.9378 -9.4270 0.8276 19 1 4.5047 -10.2444 1.3849 20 6 6.1663 -9.5806 0.2210 21 7 6.8107 -10.7227 0.3206 22 14 6.9151 -8.1669 -0.7436 23 1 7.7447 -7.3335 0.1632 24 1 7.7648 -8.7075 -1.8349 25 1 5.8308 -7.3359 -1.3259 26 6 5.0492 -6.9967 1.3182 27 6 2.2073 -1.1948 -0.0052 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6649 2.1274 0.0004 32 1 5.3091 0.1426 -0.0004 33 1 5.1922 -2.3634 -0.4801 34 1 2.4388 -4.8065 1.7521 35 1 3.0302 -5.9168 3.0131 36 1 1.1516 -6.9713 1.8462 37 1 1.9316 -6.6893 0.2707 38 1 3.0690 -8.4056 2.5244 39 1 2.2760 -9.0261 1.0568 40 1 7.6749 -10.8309 -0.1065 41 1 5.3210 -7.2559 2.3415 42 1 5.9525 -6.8613 0.7233 43 1 1.6870 -2.1412 -0.0089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595086770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:10 Heat of formation + Delta-G solvation = -9.866881 kcal Electronic energy + Delta-G solvation = -26692.825304 eV Core-core repulsion = 22931.937381 eV Total energy + Delta-G solvation = -3760.887924 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.51607 -40.29561 -38.73217 -37.33036 -35.67964 -33.92835 -33.36907 -32.03760 -30.79000 -30.57263 -27.69432 -26.49234 -25.25105 -24.42628 -23.16682 -22.11290 -21.77156 -20.54301 -19.19469 -17.96509 -17.46276 -17.29331 -16.86085 -16.57499 -16.41101 -15.79403 -15.36351 -14.63720 -14.45359 -14.24933 -14.09977 -13.90759 -13.73067 -13.42332 -13.19879 -13.12196 -12.94028 -12.80912 -12.64561 -12.25438 -12.24478 -11.82336 -11.29391 -11.15062 -10.98272 -10.59920 -10.45942 -10.22334 -9.94639 -9.84216 -9.67320 -9.50929 -9.22151 -8.84099 -8.71979 -8.67352 -8.28724 -6.17656 -4.19408 0.57380 0.92496 1.41087 2.16981 3.12063 3.28934 3.35530 3.43715 3.44182 3.48569 4.12763 4.23196 4.33616 4.45450 4.53287 4.68695 4.72064 5.09597 5.13661 5.24041 5.24184 5.36217 5.41133 5.51212 5.61323 5.71342 5.76038 5.90235 5.95130 6.03085 6.06060 6.22869 6.33588 6.36924 6.48156 6.50964 6.65587 6.70320 6.74671 7.05994 7.33084 7.46046 7.57541 7.61582 7.64708 8.02472 8.41554 8.86113 9.43155 10.94420 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022572 B = 0.003443 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.152585 B = 8131.037002 C = 9045.183844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 C 0.080 3.920 4 N -0.462 5.462 5 C 0.076 3.924 6 C 0.098 3.902 7 N -0.642 5.642 8 C 0.518 3.482 9 O -0.491 6.491 10 C 0.497 3.503 11 O -0.527 6.527 12 N -0.563 5.563 13 C 0.045 3.955 14 C -0.133 4.133 15 C -0.103 4.103 16 C 0.006 3.994 17 H 0.031 0.969 18 C -0.516 4.516 19 H 0.079 0.921 20 C 0.073 3.927 21 N -0.893 5.893 22 Si 0.878 3.122 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.266 1.266 26 C 0.097 3.903 27 C -0.080 4.080 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.427 0.573 34 H 0.149 0.851 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.266 0.734 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.469 21.478 -0.125 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.120 4.120 3 C -0.078 4.078 4 N -0.170 5.170 5 C -0.084 4.084 6 C 0.001 3.999 7 N -0.289 5.289 8 C 0.302 3.698 9 O -0.367 6.367 10 C 0.278 3.722 11 O -0.405 6.405 12 N -0.294 5.294 13 C -0.075 4.075 14 C -0.171 4.171 15 C -0.141 4.141 16 C -0.013 4.013 17 H 0.049 0.951 18 C -0.554 4.554 19 H 0.097 0.903 20 C -0.130 4.130 21 N -0.531 5.531 22 Si 0.707 3.293 23 H -0.197 1.197 24 H -0.220 1.220 25 H -0.191 1.191 26 C -0.023 4.023 27 C -0.107 4.107 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.174 0.826 32 H 0.177 0.823 33 H 0.266 0.734 34 H 0.165 0.835 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.989 22.105 0.016 24.686 hybrid contribution 0.675 -0.362 -0.688 1.030 sum -10.314 21.743 -0.672 24.075 Atomic orbital electron populations 1.20745 0.89753 1.03500 1.02809 1.20894 0.97897 0.93301 0.99955 1.22675 0.89815 0.97636 0.97633 1.67670 1.08352 1.29750 1.11208 1.22646 1.00582 0.86002 0.99128 1.18853 0.91886 0.86764 1.02381 1.43166 1.25571 1.09634 1.50495 1.20845 0.86572 0.84613 0.77744 1.90285 1.21159 1.80030 1.45213 1.19587 0.87096 0.84247 0.81311 1.90779 1.18148 1.83255 1.48360 1.48428 1.18720 1.09512 1.52750 1.23290 0.82310 1.04928 0.97013 1.21943 0.98256 0.96077 1.00810 1.21486 0.96794 0.95186 1.00653 1.19493 0.92633 0.93679 0.95526 0.95090 1.20953 1.03468 0.96780 1.34213 0.90277 1.25057 0.96884 0.95537 0.95527 1.69880 1.14951 1.24281 1.43939 0.87010 0.79921 0.82015 0.80345 1.19741 1.22035 1.19071 1.22905 0.95655 0.81184 1.02529 1.21701 0.92220 0.99782 0.97025 0.90674 0.90874 0.90947 0.82566 0.82269 0.73425 0.83484 0.91635 0.91478 0.92296 0.92444 0.92162 0.92401 0.90665 0.90219 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.03 36.01 0.36 -0.31 16 2 C -0.12 -1.04 5.89 -104.51 -0.62 -1.66 16 3 C 0.08 0.72 10.85 -17.52 -0.19 0.53 16 4 N -0.46 -4.96 10.35 -13.07 -0.14 -5.09 16 5 C 0.08 0.77 11.13 -17.32 -0.19 0.58 16 6 C 0.10 1.07 6.31 -83.59 -0.53 0.54 16 7 N -0.64 -7.45 5.33 -10.20 -0.05 -7.50 16 8 C 0.52 7.35 7.67 -11.63 -0.09 7.26 16 9 O -0.49 -6.97 10.51 5.48 0.06 -6.91 16 10 C 0.50 8.79 7.75 -11.63 -0.09 8.70 16 11 O -0.53 -10.62 15.94 5.49 0.09 -10.54 16 12 N -0.56 -10.39 2.98 -173.28 -0.52 -10.90 16 13 C 0.05 0.70 6.27 -3.71 -0.02 0.67 16 14 C -0.13 -2.03 6.08 -26.61 -0.16 -2.19 16 15 C -0.10 -1.94 5.11 -26.69 -0.14 -2.07 16 16 C 0.01 0.14 1.84 -91.65 -0.17 -0.03 16 17 H 0.03 0.75 7.19 -51.93 -0.37 0.37 16 18 C -0.52 -14.02 9.14 -34.44 -0.31 -14.34 16 19 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 20 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 21 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 22 Si 0.88 22.35 24.33 -169.99 -4.14 18.21 16 23 H -0.27 -6.91 6.91 56.52 0.39 -6.52 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 25 H -0.27 -6.68 6.53 56.52 0.37 -6.31 16 26 C 0.10 2.12 5.10 -3.69 -0.02 2.10 16 27 C -0.08 -0.85 8.49 -39.08 -0.33 -1.18 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.16 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.43 4.36 8.33 -40.82 -0.34 4.02 16 34 H 0.15 2.13 3.70 -57.21 -0.21 1.92 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 42 H 0.08 1.92 2.38 -51.93 -0.12 1.80 16 43 H 0.15 1.69 6.34 -52.49 -0.33 1.36 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -32.15 344.60 -6.95 -39.10 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.62 Total: 3.95 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -2.60 Total: 0.59 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.07 Total: -49.60 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.15 Total: -17.45 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.21 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.15 -6.95 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.237 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds