Wall clock time and date at job start Tue Mar 31 2020 11:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38275 * 120.38301 * 2 1 4 4 N 1.31867 * 120.93388 * 180.02562 * 3 2 1 5 5 C 1.31800 * 121.80216 * 359.96765 * 4 3 2 6 6 C 1.38903 * 120.65546 * 359.97438 * 5 4 3 7 7 N 1.39758 * 120.49668 * 180.02562 * 6 5 4 8 8 C 1.34779 * 120.00103 * 145.04002 * 7 6 5 9 9 O 1.21374 * 119.99870 * 4.72263 * 8 7 6 10 10 C 1.49351 * 119.99706 * 184.71677 * 8 7 6 11 11 O 1.21359 * 120.00265 * 6.26006 * 10 8 7 12 12 N 1.34777 * 119.99832 * 186.25402 * 10 8 7 13 13 C 1.46924 * 120.63091 * 355.25234 * 12 10 8 14 14 C 1.53193 * 108.89469 * 126.46091 * 13 12 10 15 15 C 1.53033 * 109.31599 * 54.56209 * 14 13 12 16 16 C 1.53045 * 109.53767 * 298.63783 * 15 14 13 17 17 H 1.08991 * 109.49643 * 301.38020 * 16 15 14 18 18 C 1.50703 * 109.49523 * 181.31355 * 16 15 14 19 19 H 1.07996 * 120.00192 * 359.97438 * 18 16 15 20 20 C 1.37874 * 119.99721 * 179.97438 * 18 16 15 21 21 N 1.31509 * 120.00255 * 180.02562 * 20 18 16 22 22 Si 1.86804 * 120.00097 * 359.97438 * 20 18 16 23 23 H 1.48499 * 109.47156 * 89.99816 * 22 20 18 24 24 H 1.48496 * 109.47158 * 209.99998 * 22 20 18 25 25 H 1.48503 * 109.47118 * 330.00186 * 22 20 18 26 26 C 1.46961 * 120.65361 * 175.06332 * 12 10 8 27 27 C 1.38494 * 120.37683 * 180.24907 * 2 1 3 28 28 H 1.09000 * 109.47013 * 89.99983 * 1 2 3 29 29 H 1.08997 * 109.47069 * 210.00545 * 1 2 3 30 30 H 1.08996 * 109.46957 * 330.00548 * 1 2 3 31 31 H 1.08008 * 119.53142 * 0.02562 * 3 2 1 32 32 H 1.07996 * 119.67361 * 180.02562 * 5 4 3 33 33 H 0.97002 * 119.99535 * 325.04875 * 7 6 5 34 34 H 1.08996 * 109.59092 * 6.59778 * 13 12 10 35 35 H 1.09007 * 109.58572 * 246.31762 * 13 12 10 36 36 H 1.09007 * 109.49826 * 174.51950 * 14 13 12 37 37 H 1.09001 * 109.49398 * 294.60847 * 14 13 12 38 38 H 1.09003 * 109.46248 * 58.65192 * 15 14 13 39 39 H 1.09000 * 109.46544 * 178.62853 * 15 14 13 40 40 H 0.97002 * 120.00359 * 179.97438 * 21 20 18 41 41 H 1.09006 * 109.46319 * 113.75767 * 26 12 10 42 42 H 1.08998 * 109.71532 * 353.46828 * 26 12 10 43 43 H 1.07999 * 120.82143 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.1929 0.0000 4 7 3.5250 1.2055 -0.0005 5 6 4.2303 0.0921 -0.0004 6 6 3.5999 -1.1456 0.0008 7 7 4.3510 -2.3241 0.0014 8 6 3.9068 -3.4061 0.6713 9 8 2.8154 -3.3854 1.2020 10 6 4.7575 -4.6304 0.7603 11 8 5.8918 -4.6139 0.3292 12 7 4.2654 -5.7536 1.3195 13 6 2.9331 -5.7599 1.9388 14 6 2.1068 -6.8953 1.3266 15 6 2.8724 -8.2126 1.4698 16 6 4.1992 -8.1183 0.7129 17 1 4.0043 -7.9014 -0.3373 18 6 4.9378 -9.4270 0.8276 19 1 4.5047 -10.2444 1.3849 20 6 6.1663 -9.5806 0.2210 21 7 6.8107 -10.7227 0.3206 22 14 6.9151 -8.1669 -0.7436 23 1 7.7447 -7.3335 0.1632 24 1 7.7648 -8.7075 -1.8349 25 1 5.8308 -7.3359 -1.3259 26 6 5.0492 -6.9967 1.3182 27 6 2.2073 -1.1948 -0.0052 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6649 2.1274 0.0004 32 1 5.3091 0.1426 -0.0004 33 1 5.1922 -2.3634 -0.4801 34 1 2.4388 -4.8065 1.7521 35 1 3.0302 -5.9168 3.0131 36 1 1.1516 -6.9713 1.8462 37 1 1.9316 -6.6893 0.2707 38 1 3.0690 -8.4056 2.5244 39 1 2.2760 -9.0261 1.0568 40 1 7.6749 -10.8309 -0.1065 41 1 5.3210 -7.2559 2.3415 42 1 5.9525 -6.8613 0.7233 43 1 1.6870 -2.1412 -0.0089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595086770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:09 Heat of formation + Delta-G solvation = -32.474814 kcal Electronic energy + Delta-G solvation = -26693.805658 eV Core-core repulsion = 22931.937381 eV Total energy + Delta-G solvation = -3761.868277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.58737 -41.29750 -39.93127 -38.79874 -36.71063 -35.22945 -34.57696 -33.68605 -32.30077 -31.60446 -28.27974 -27.90187 -27.01243 -25.49962 -24.16065 -23.64153 -22.70988 -21.77653 -20.71252 -19.24042 -18.82796 -18.51929 -18.05069 -17.71915 -17.55325 -16.99614 -16.48165 -16.37824 -15.81009 -15.56188 -15.18127 -15.14120 -14.95833 -14.69949 -14.47416 -14.24749 -14.11793 -13.77444 -13.65677 -13.50707 -13.29708 -13.06391 -12.80841 -12.54365 -12.36694 -12.16999 -12.13124 -11.81281 -11.63867 -11.37792 -11.11124 -10.83254 -10.70594 -10.40089 -10.06402 -9.82607 -9.49279 -8.39994 -6.43343 -0.31280 0.16447 0.33891 1.01159 1.23366 1.30031 1.36311 1.86594 2.19003 2.25886 2.72377 2.95145 2.98445 3.53118 3.77316 3.79369 3.91235 4.00094 4.04092 4.10752 4.16393 4.36095 4.39492 4.47683 4.54405 4.63202 4.71869 4.80595 4.85655 4.89279 4.97543 5.02828 5.12183 5.18947 5.22499 5.26390 5.35737 5.46057 5.55672 5.60122 5.69677 5.75653 6.14150 6.22936 6.46191 6.64130 6.68343 6.89480 7.22183 8.76037 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022572 B = 0.003443 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.152585 B = 8131.037002 C = 9045.183844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.116 4.116 3 C 0.080 3.920 4 N -0.482 5.482 5 C 0.074 3.926 6 C 0.081 3.919 7 N -0.627 5.627 8 C 0.528 3.472 9 O -0.491 6.491 10 C 0.493 3.507 11 O -0.556 6.556 12 N -0.569 5.569 13 C 0.045 3.955 14 C -0.123 4.123 15 C -0.101 4.101 16 C 0.006 3.994 17 H 0.019 0.981 18 C -0.513 4.513 19 H 0.050 0.950 20 C 0.026 3.974 21 N -0.937 5.937 22 Si 0.935 3.065 23 H -0.274 1.274 24 H -0.291 1.291 25 H -0.263 1.263 26 C 0.104 3.896 27 C -0.092 4.092 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.185 0.815 32 H 0.176 0.824 33 H 0.433 0.567 34 H 0.164 0.836 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.268 0.732 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.584 24.591 -0.084 28.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.118 4.118 3 C -0.077 4.077 4 N -0.190 5.190 5 C -0.085 4.085 6 C -0.015 4.015 7 N -0.274 5.274 8 C 0.311 3.689 9 O -0.367 6.367 10 C 0.275 3.725 11 O -0.436 6.436 12 N -0.300 5.300 13 C -0.075 4.075 14 C -0.161 4.161 15 C -0.138 4.138 16 C -0.014 4.014 17 H 0.037 0.963 18 C -0.552 4.552 19 H 0.068 0.932 20 C -0.173 4.173 21 N -0.577 5.577 22 Si 0.763 3.237 23 H -0.200 1.200 24 H -0.219 1.219 25 H -0.188 1.188 26 C -0.018 4.018 27 C -0.120 4.120 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.202 0.798 32 H 0.193 0.807 33 H 0.273 0.727 34 H 0.180 0.820 35 H 0.096 0.904 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.134 25.259 0.052 28.469 hybrid contribution 1.243 -1.269 -0.676 1.901 sum -11.891 23.990 -0.624 26.782 Atomic orbital electron populations 1.20817 0.87650 1.04389 1.03785 1.21188 0.99383 0.92525 0.98706 1.23205 0.89465 0.98908 0.96112 1.67738 1.09361 1.29887 1.11981 1.22890 1.01473 0.85575 0.98534 1.18946 0.92108 0.86422 1.04003 1.42975 1.25711 1.09177 1.49522 1.19995 0.86109 0.84119 0.78649 1.90260 1.20814 1.79898 1.45722 1.20156 0.87110 0.85069 0.80161 1.90756 1.19595 1.83983 1.49273 1.48413 1.19574 1.08675 1.53378 1.23552 0.80673 1.05718 0.97520 1.21902 0.99219 0.93617 1.01385 1.21428 0.94964 0.97486 0.99945 1.19415 0.94496 0.91825 0.95615 0.96286 1.21268 1.03285 0.98095 1.32541 0.93190 1.25693 0.97614 0.97258 0.96705 1.69988 1.15722 1.26147 1.45824 0.86089 0.79117 0.79425 0.79059 1.20004 1.21864 1.18768 1.22406 0.94903 0.82734 1.01711 1.21814 0.92253 1.00369 0.97525 0.89535 0.91023 0.89055 0.79768 0.80701 0.72741 0.81979 0.90398 0.87822 0.92432 0.92283 0.92371 0.92265 0.90896 0.92523 0.83645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.03 71.24 0.71 -0.24 16 2 C -0.12 -1.72 5.89 -19.79 -0.12 -1.84 16 3 C 0.08 1.21 10.85 84.70 0.92 2.12 16 4 N -0.48 -9.22 10.35 -195.28 -2.02 -11.24 16 5 C 0.07 1.37 11.13 84.86 0.94 2.31 16 6 C 0.08 1.62 6.31 38.30 0.24 1.86 16 7 N -0.63 -13.56 5.33 -304.52 -1.62 -15.18 16 8 C 0.53 14.07 7.67 87.24 0.67 14.74 16 9 O -0.49 -12.75 10.51 -3.32 -0.03 -12.79 16 10 C 0.49 16.90 7.75 87.24 0.68 17.57 16 11 O -0.56 -22.13 15.94 -3.28 -0.05 -22.18 16 12 N -0.57 -20.29 2.98 -820.50 -2.45 -22.74 16 13 C 0.04 1.26 6.27 86.36 0.54 1.80 16 14 C -0.12 -3.43 6.08 30.67 0.19 -3.24 16 15 C -0.10 -3.65 5.11 30.62 0.16 -3.49 16 16 C 0.01 0.28 1.84 -11.46 -0.02 0.25 16 17 H 0.02 0.91 7.19 -2.39 -0.02 0.90 16 18 C -0.51 -28.60 9.14 25.60 0.23 -28.37 16 19 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 20 C 0.03 1.52 5.45 84.65 0.46 1.98 16 21 N -0.94 -58.04 13.96 21.45 0.30 -57.74 16 22 Si 0.93 47.46 24.33 68.60 1.67 49.13 16 23 H -0.27 -13.88 6.91 99.48 0.69 -13.19 16 24 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 25 H -0.26 -13.04 6.53 99.48 0.65 -12.39 16 26 C 0.10 4.52 5.10 86.36 0.44 4.96 16 27 C -0.09 -1.77 8.49 22.60 0.19 -1.58 16 28 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.68 8.10 -2.39 -0.02 0.66 16 30 H 0.09 0.47 8.09 -2.39 -0.02 0.45 16 31 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.18 2.46 8.06 -2.91 -0.02 2.43 16 33 H 0.43 8.29 8.33 -92.71 -0.77 7.52 16 34 H 0.16 4.18 3.70 -85.96 -0.32 3.87 16 35 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 41 H 0.07 3.14 8.14 -2.38 -0.02 3.12 16 42 H 0.06 2.74 2.38 -2.39 -0.01 2.73 16 43 H 0.15 2.95 6.34 -2.91 -0.02 2.93 16 Total: -1.00 -70.66 344.60 1.93 -68.73 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -0.10 Total: 15.16 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.24 Total: 8.84 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -5.79 Total: -106.90 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.09 Total: -34.97 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.67 Total: 49.13 kcal Total: -70.66 1.93 -68.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.258 kcal (2) G-P(sol) polarization free energy of solvation -70.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds