Wall clock time and date at job start Tue Mar 31 2020 11:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 119.57551 * 2 1 4 4 C 1.38791 * 119.31413 * 179.97438 * 3 2 1 5 5 C 1.38404 * 118.49946 * 359.74568 * 4 3 2 6 6 C 1.39044 * 119.09530 * 0.47838 * 5 4 3 7 7 N 1.39256 * 119.69395 * 179.79296 * 6 5 4 8 8 C 1.34772 * 119.99570 * 185.33460 * 7 6 5 9 9 O 1.21358 * 120.00117 * 355.29407 * 8 7 6 10 10 C 1.49365 * 120.00075 * 175.29915 * 8 7 6 11 11 O 1.21359 * 119.99894 * 353.61781 * 10 8 7 12 12 N 1.34778 * 120.00508 * 173.62383 * 10 8 7 13 13 C 1.46929 * 120.62398 * 351.03727 * 12 10 8 14 14 C 1.52767 * 109.00398 * 233.58155 * 13 12 10 15 15 C 1.53045 * 109.38410 * 305.59077 * 14 13 12 16 16 C 1.53046 * 109.53626 * 61.23875 * 15 14 13 17 17 H 1.08997 * 109.49839 * 58.58768 * 16 15 14 18 18 C 1.50702 * 109.51966 * 178.66532 * 16 15 14 19 19 H 1.07994 * 120.00252 * 359.85676 * 18 16 15 20 20 C 1.37875 * 119.99537 * 179.85410 * 18 16 15 21 21 N 1.31514 * 120.00339 * 0.02562 * 20 18 16 22 22 Si 1.86808 * 119.99784 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46892 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47162 * 120.00052 * 22 20 18 25 25 H 1.48493 * 109.47127 * 240.00008 * 22 20 18 26 26 C 1.46921 * 120.63085 * 171.31567 * 12 10 8 27 27 N 1.31894 * 119.57377 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46743 * 270.02171 * 1 2 3 29 29 H 1.08998 * 109.46929 * 30.02223 * 1 2 3 30 30 H 1.09006 * 109.46669 * 150.02414 * 1 2 3 31 31 H 1.07999 * 120.33839 * 359.97438 * 3 2 1 32 32 H 1.07999 * 120.75097 * 179.97438 * 4 3 2 33 33 H 1.08003 * 120.45266 * 180.24655 * 5 4 3 34 34 H 0.96995 * 120.00256 * 5.60963 * 7 6 5 35 35 H 1.08997 * 109.58954 * 353.41619 * 13 12 10 36 36 H 1.08996 * 109.58695 * 113.84545 * 13 12 10 37 37 H 1.08998 * 109.56610 * 185.55310 * 14 13 12 38 38 H 1.09007 * 109.35776 * 65.49829 * 14 13 12 39 39 H 1.08991 * 109.45892 * 301.22014 * 15 14 13 40 40 H 1.08999 * 109.44827 * 181.25251 * 15 14 13 41 41 H 0.97005 * 119.99889 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.58330 * 246.15126 * 26 12 10 43 43 H 1.08990 * 109.59181 * 6.43677 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2014 0.0000 4 6 3.5767 1.1951 0.0005 5 6 4.2316 -0.0242 0.0065 6 6 3.4811 -1.1947 0.0015 7 7 4.1272 -2.4284 0.0030 8 6 3.4107 -3.5643 -0.1103 9 8 2.1982 -3.5177 -0.1276 10 6 4.1091 -4.8805 -0.2144 11 8 5.3180 -4.9198 -0.3137 12 7 3.3968 -6.0246 -0.1982 13 6 1.9617 -6.0083 0.1162 14 6 1.6905 -6.9912 1.2538 15 6 2.2358 -8.3700 0.8747 16 6 3.7487 -8.2811 0.6611 17 1 4.2241 -7.9186 1.5725 18 6 4.2902 -9.6454 0.3198 19 1 3.6228 -10.4926 0.2632 20 6 5.6376 -9.8120 0.0799 21 7 6.4504 -8.7804 0.1493 22 14 6.3088 -11.5031 -0.3439 23 1 5.1969 -12.4874 -0.3587 24 1 6.9492 -11.4601 -1.6830 25 1 7.3135 -11.9058 0.6726 26 6 4.0420 -7.3122 -0.4886 27 7 2.1580 -1.1471 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8903 -0.5135 31 1 1.6474 2.1359 -0.0004 32 1 4.1332 2.1207 0.0001 33 1 5.3108 -0.0659 0.0111 34 1 5.0923 -2.4703 0.0896 35 1 1.6662 -5.0052 0.4236 36 1 1.3914 -6.3059 -0.7637 37 1 0.6168 -7.0601 1.4286 38 1 2.1854 -6.6408 2.1597 39 1 1.7586 -8.7089 -0.0448 40 1 2.0232 -9.0774 1.6762 41 1 7.3985 -8.8978 -0.0191 42 1 3.6448 -7.7183 -1.4189 43 1 5.1183 -7.1687 -0.5827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595086801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:58 Heat of formation + Delta-G solvation = -9.481295 kcal Electronic energy + Delta-G solvation = -26522.994181 eV Core-core repulsion = 22762.122977 eV Total energy + Delta-G solvation = -3760.871203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.13898 -39.96889 -38.22627 -36.90338 -35.33319 -33.29937 -32.97532 -31.78935 -31.39733 -29.78964 -27.82975 -26.12464 -25.03806 -24.02721 -22.62425 -22.02017 -21.79482 -20.11607 -18.91833 -17.74652 -17.29950 -16.52952 -16.29580 -16.00352 -15.77968 -15.61245 -14.86928 -14.67343 -14.49016 -14.09882 -13.87363 -13.56217 -13.37036 -13.18267 -12.94213 -12.71138 -12.57679 -12.42079 -12.18629 -12.16710 -11.82997 -11.42242 -11.00355 -10.87018 -10.69586 -10.45797 -10.31524 -10.12292 -9.91100 -9.89185 -9.65654 -9.16224 -9.12151 -8.56838 -8.47292 -8.36861 -7.85910 -6.02580 -4.11084 0.81524 1.11442 1.87969 2.43344 3.28687 3.37236 3.40574 3.46543 3.67027 3.77891 4.22204 4.41168 4.52714 4.63157 4.80777 4.89598 5.01553 5.27529 5.34315 5.38396 5.45466 5.58650 5.65386 5.73543 5.81500 5.88719 5.97975 6.05659 6.21708 6.33515 6.40032 6.55717 6.62457 6.69840 6.83279 6.92548 6.97280 7.05272 7.15397 7.56002 7.72323 7.83743 7.93076 8.06381 8.13208 8.33129 8.51584 8.93213 9.54634 11.02718 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026340 B = 0.003028 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.758390 B = 9244.503256 C =10149.567901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.160 3.840 3 C -0.209 4.209 4 C -0.045 4.045 5 C -0.212 4.212 6 C 0.368 3.632 7 N -0.640 5.640 8 C 0.501 3.499 9 O -0.447 6.447 10 C 0.496 3.504 11 O -0.519 6.519 12 N -0.566 5.566 13 C 0.072 3.928 14 C -0.133 4.133 15 C -0.113 4.113 16 C 0.041 3.959 17 H 0.030 0.970 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.108 3.892 27 N -0.478 5.478 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.429 0.571 35 H 0.124 0.876 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.263 0.737 42 H 0.050 0.950 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.322 20.000 -0.114 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.021 3.979 3 C -0.230 4.230 4 C -0.071 4.071 5 C -0.235 4.235 6 C 0.137 3.863 7 N -0.288 5.288 8 C 0.283 3.717 9 O -0.315 6.315 10 C 0.276 3.724 11 O -0.396 6.396 12 N -0.298 5.298 13 C -0.050 4.050 14 C -0.172 4.172 15 C -0.150 4.150 16 C 0.021 3.979 17 H 0.048 0.952 18 C -0.557 4.557 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.519 5.519 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.011 4.011 27 N -0.194 5.194 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.268 0.732 35 H 0.141 0.859 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.819 19.109 -0.237 21.047 hybrid contribution 1.495 -0.211 -0.207 1.524 sum -7.324 18.898 -0.445 20.273 Atomic orbital electron populations 1.20728 0.88603 1.03565 1.03205 1.21208 0.97012 0.87342 0.92373 1.21857 0.94904 0.99188 1.07043 1.21327 0.94287 0.97496 0.93965 1.21491 1.01166 0.91650 1.09227 1.18442 0.89056 0.85046 0.93736 1.43406 1.12185 1.03055 1.70159 1.21046 0.87775 0.85676 0.77156 1.90583 1.13025 1.85259 1.42665 1.19665 0.87384 0.84641 0.80664 1.90787 1.12853 1.86595 1.49408 1.48444 1.10245 1.07141 1.63977 1.22601 0.80434 1.03700 0.98294 1.21887 1.00001 0.97157 0.98116 1.21658 0.99009 0.94219 1.00142 1.18969 0.89915 0.94482 0.94490 0.95164 1.21126 0.92790 0.93421 1.48387 0.92182 1.25067 0.97130 0.96812 0.95098 1.69892 1.04149 1.29286 1.48555 0.86520 0.78983 0.84388 0.78034 1.19765 1.20971 1.20996 1.22516 1.01432 0.78572 0.98621 1.67476 1.06928 1.29281 1.15688 0.90281 0.90731 0.90063 0.84850 0.84452 0.84393 0.73155 0.85880 0.91989 0.91983 0.92433 0.93122 0.92994 0.92693 0.93207 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.17 36.01 0.37 -0.52 16 2 C 0.16 1.81 6.78 -82.60 -0.56 1.25 16 3 C -0.21 -1.83 9.73 -39.41 -0.38 -2.21 16 4 C -0.04 -0.37 10.17 -39.32 -0.40 -0.77 16 5 C -0.21 -2.12 9.94 -39.22 -0.39 -2.51 16 6 C 0.37 4.96 7.42 -154.81 -1.15 3.81 16 7 N -0.64 -9.15 5.37 -11.86 -0.06 -9.22 16 8 C 0.50 8.69 7.70 -11.63 -0.09 8.60 16 9 O -0.45 -8.11 11.44 5.49 0.06 -8.05 16 10 C 0.50 10.06 7.73 -11.62 -0.09 9.97 16 11 O -0.52 -11.78 15.94 5.49 0.09 -11.69 16 12 N -0.57 -11.84 2.98 -173.58 -0.52 -12.35 16 13 C 0.07 1.29 5.95 -3.93 -0.02 1.27 16 14 C -0.13 -2.35 6.06 -26.83 -0.16 -2.52 16 15 C -0.11 -2.31 5.11 -26.68 -0.14 -2.44 16 16 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 17 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 18 C -0.52 -13.99 8.57 -34.44 -0.29 -14.28 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 21 N -0.88 -25.29 11.39 55.43 0.63 -24.66 16 22 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.11 2.61 5.41 -3.72 -0.02 2.59 16 27 N -0.48 -6.97 7.80 -8.61 -0.07 -7.03 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.43 5.29 8.21 -40.82 -0.33 4.95 16 35 H 0.12 2.18 4.32 -54.75 -0.24 1.94 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.12 3.43 5.13 -51.93 -0.27 3.17 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -32.29 353.30 -9.07 -41.36 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.87 Total: 5.61 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -3.63 Total: 4.64 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.02 Total: -53.26 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.15 Total: -19.74 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.29 -9.07 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.877 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds