Wall clock time and date at job start Tue Mar 31 2020 11:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 119.57551 * 2 1 4 4 C 1.38791 * 119.31413 * 179.97438 * 3 2 1 5 5 C 1.38404 * 118.49946 * 359.74568 * 4 3 2 6 6 C 1.39044 * 119.09530 * 0.47838 * 5 4 3 7 7 N 1.39256 * 119.69395 * 179.79296 * 6 5 4 8 8 C 1.34772 * 119.99570 * 185.33460 * 7 6 5 9 9 O 1.21358 * 120.00117 * 355.29407 * 8 7 6 10 10 C 1.49365 * 120.00075 * 175.29915 * 8 7 6 11 11 O 1.21359 * 119.99894 * 353.61781 * 10 8 7 12 12 N 1.34778 * 120.00508 * 173.62383 * 10 8 7 13 13 C 1.46929 * 120.62398 * 351.03727 * 12 10 8 14 14 C 1.52767 * 109.00398 * 233.58155 * 13 12 10 15 15 C 1.53045 * 109.38410 * 305.59077 * 14 13 12 16 16 C 1.53046 * 109.53626 * 61.23875 * 15 14 13 17 17 H 1.08997 * 109.49839 * 58.58768 * 16 15 14 18 18 C 1.50702 * 109.51966 * 178.66532 * 16 15 14 19 19 H 1.07994 * 120.00252 * 359.85676 * 18 16 15 20 20 C 1.37875 * 119.99537 * 179.85410 * 18 16 15 21 21 N 1.31514 * 120.00339 * 0.02562 * 20 18 16 22 22 Si 1.86808 * 119.99784 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46892 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47162 * 120.00052 * 22 20 18 25 25 H 1.48493 * 109.47127 * 240.00008 * 22 20 18 26 26 C 1.46921 * 120.63085 * 171.31567 * 12 10 8 27 27 N 1.31894 * 119.57377 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46743 * 270.02171 * 1 2 3 29 29 H 1.08998 * 109.46929 * 30.02223 * 1 2 3 30 30 H 1.09006 * 109.46669 * 150.02414 * 1 2 3 31 31 H 1.07999 * 120.33839 * 359.97438 * 3 2 1 32 32 H 1.07999 * 120.75097 * 179.97438 * 4 3 2 33 33 H 1.08003 * 120.45266 * 180.24655 * 5 4 3 34 34 H 0.96995 * 120.00256 * 5.60963 * 7 6 5 35 35 H 1.08997 * 109.58954 * 353.41619 * 13 12 10 36 36 H 1.08996 * 109.58695 * 113.84545 * 13 12 10 37 37 H 1.08998 * 109.56610 * 185.55310 * 14 13 12 38 38 H 1.09007 * 109.35776 * 65.49829 * 14 13 12 39 39 H 1.08991 * 109.45892 * 301.22014 * 15 14 13 40 40 H 1.08999 * 109.44827 * 181.25251 * 15 14 13 41 41 H 0.97005 * 119.99889 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.58330 * 246.15126 * 26 12 10 43 43 H 1.08990 * 109.59181 * 6.43677 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2014 0.0000 4 6 3.5767 1.1951 0.0005 5 6 4.2316 -0.0242 0.0065 6 6 3.4811 -1.1947 0.0015 7 7 4.1272 -2.4284 0.0030 8 6 3.4107 -3.5643 -0.1103 9 8 2.1982 -3.5177 -0.1276 10 6 4.1091 -4.8805 -0.2144 11 8 5.3180 -4.9198 -0.3137 12 7 3.3968 -6.0246 -0.1982 13 6 1.9617 -6.0083 0.1162 14 6 1.6905 -6.9912 1.2538 15 6 2.2358 -8.3700 0.8747 16 6 3.7487 -8.2811 0.6611 17 1 4.2241 -7.9186 1.5725 18 6 4.2902 -9.6454 0.3198 19 1 3.6228 -10.4926 0.2632 20 6 5.6376 -9.8120 0.0799 21 7 6.4504 -8.7804 0.1493 22 14 6.3088 -11.5031 -0.3439 23 1 5.1969 -12.4874 -0.3587 24 1 6.9492 -11.4601 -1.6830 25 1 7.3135 -11.9058 0.6726 26 6 4.0420 -7.3122 -0.4886 27 7 2.1580 -1.1471 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8903 -0.5135 31 1 1.6474 2.1359 -0.0004 32 1 4.1332 2.1207 0.0001 33 1 5.3108 -0.0659 0.0111 34 1 5.0923 -2.4703 0.0896 35 1 1.6662 -5.0052 0.4236 36 1 1.3914 -6.3059 -0.7637 37 1 0.6168 -7.0601 1.4286 38 1 2.1854 -6.6408 2.1597 39 1 1.7586 -8.7089 -0.0448 40 1 2.0232 -9.0774 1.6762 41 1 7.3985 -8.8978 -0.0191 42 1 3.6448 -7.7183 -1.4189 43 1 5.1183 -7.1687 -0.5827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595086801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:57 Heat of formation + Delta-G solvation = -29.904493 kcal Electronic energy + Delta-G solvation = -26523.879797 eV Core-core repulsion = 22762.122977 eV Total energy + Delta-G solvation = -3761.756820 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.34158 -41.15390 -39.62970 -38.58203 -36.50400 -35.18573 -33.76044 -33.49510 -32.30245 -31.62623 -28.68486 -27.66757 -26.87578 -25.29268 -23.67391 -23.37784 -23.15428 -21.56549 -20.50644 -19.03891 -18.62599 -18.29747 -17.58951 -17.17895 -17.05997 -16.71601 -16.49000 -16.16784 -15.81086 -15.48890 -15.05239 -14.90078 -14.71828 -14.65826 -14.42481 -13.97381 -13.85431 -13.55089 -13.49447 -13.13958 -13.04130 -12.90675 -12.75856 -12.48533 -12.31325 -12.16996 -11.88073 -11.72681 -11.62351 -11.17372 -11.00566 -10.72515 -10.62086 -10.54323 -9.90877 -9.60174 -9.27570 -8.11978 -6.28730 -0.16755 0.34109 0.62816 1.13591 1.40983 1.42591 1.54371 2.05385 2.33798 2.43073 2.87621 3.06662 3.16727 3.49812 3.88833 4.01542 4.09805 4.14564 4.21308 4.29314 4.35982 4.56578 4.63513 4.68796 4.76834 4.79084 4.82728 4.84811 5.01900 5.04421 5.11689 5.20814 5.20950 5.26781 5.27775 5.31168 5.43784 5.56213 5.73984 5.83888 5.88270 5.93219 6.25996 6.33798 6.58055 6.81800 6.89243 7.16897 7.41168 8.92018 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026340 B = 0.003028 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.758390 B = 9244.503256 C =10149.567901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.132 3.868 3 C -0.193 4.193 4 C -0.042 4.042 5 C -0.205 4.205 6 C 0.329 3.671 7 N -0.629 5.629 8 C 0.511 3.489 9 O -0.458 6.458 10 C 0.490 3.510 11 O -0.552 6.552 12 N -0.573 5.573 13 C 0.073 3.927 14 C -0.125 4.125 15 C -0.106 4.106 16 C 0.039 3.961 17 H -0.010 1.010 18 C -0.534 4.534 19 H 0.063 0.937 20 C 0.011 3.989 21 N -0.913 5.913 22 Si 0.959 3.041 23 H -0.262 1.262 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.121 3.879 27 N -0.518 5.518 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.169 0.831 32 H 0.178 0.822 33 H 0.161 0.839 34 H 0.436 0.564 35 H 0.133 0.867 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.261 0.739 42 H 0.047 0.953 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.687 22.182 -0.208 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.006 4.006 3 C -0.213 4.213 4 C -0.067 4.067 5 C -0.228 4.228 6 C 0.100 3.900 7 N -0.278 5.278 8 C 0.292 3.708 9 O -0.329 6.329 10 C 0.272 3.728 11 O -0.431 6.431 12 N -0.305 5.305 13 C -0.048 4.048 14 C -0.163 4.163 15 C -0.144 4.144 16 C 0.020 3.980 17 H 0.008 0.992 18 C -0.573 4.573 19 H 0.081 0.919 20 C -0.189 4.189 21 N -0.552 5.552 22 Si 0.785 3.215 23 H -0.186 1.186 24 H -0.207 1.207 25 H -0.208 1.208 26 C 0.000 4.000 27 N -0.235 5.235 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.187 0.813 32 H 0.196 0.804 33 H 0.179 0.821 34 H 0.276 0.724 35 H 0.149 0.851 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.213 21.336 -0.322 23.656 hybrid contribution 1.907 -0.713 -0.162 2.042 sum -8.306 20.623 -0.484 22.238 Atomic orbital electron populations 1.20784 0.87231 1.04001 1.03750 1.21729 0.98201 0.87546 0.93152 1.22295 0.95415 0.99550 1.04084 1.21853 0.94428 0.98197 0.92249 1.21820 1.02323 0.91036 1.07589 1.18707 0.89497 0.85084 0.96716 1.43210 1.12345 1.02864 1.69392 1.20256 0.87454 0.85208 0.77869 1.90560 1.13058 1.85252 1.44005 1.20270 0.87140 0.85826 0.79543 1.90755 1.14380 1.87337 1.50652 1.48453 1.11495 1.06374 1.64129 1.22786 0.78581 1.04417 0.98991 1.21854 1.02119 0.94989 0.97362 1.21550 0.95808 0.96270 1.00737 1.18903 0.92719 0.93648 0.92738 0.99171 1.21501 0.93211 0.94502 1.48067 0.91895 1.25884 0.97544 1.00401 0.95027 1.70067 1.04201 1.31371 1.49572 0.85485 0.78378 0.80061 0.77613 1.18644 1.20717 1.20825 1.21997 0.99508 0.80258 0.98265 1.67325 1.07820 1.31554 1.16770 0.89637 0.87790 0.92090 0.81305 0.80448 0.82134 0.72415 0.85057 0.90696 0.88067 0.93383 0.92299 0.92604 0.92946 0.93473 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 10.17 71.24 0.72 -0.82 16 2 C 0.13 2.75 6.78 42.53 0.29 3.04 16 3 C -0.19 -2.67 9.73 22.38 0.22 -2.45 16 4 C -0.04 -0.53 10.17 22.44 0.23 -0.30 16 5 C -0.20 -3.62 9.94 22.50 0.22 -3.40 16 6 C 0.33 8.67 7.42 132.95 0.99 9.65 16 7 N -0.63 -18.29 5.37 -309.80 -1.66 -19.96 16 8 C 0.51 18.18 7.70 87.24 0.67 18.85 16 9 O -0.46 -16.86 11.44 -3.27 -0.04 -16.89 16 10 C 0.49 20.78 7.73 87.24 0.67 21.46 16 11 O -0.55 -26.50 15.94 -3.28 -0.05 -26.55 16 12 N -0.57 -24.77 2.98 -821.43 -2.45 -27.22 16 13 C 0.07 2.60 5.95 86.22 0.51 3.11 16 14 C -0.13 -4.29 6.06 30.53 0.19 -4.11 16 15 C -0.11 -4.31 5.11 30.62 0.16 -4.16 16 16 C 0.04 2.01 2.25 -11.46 -0.03 1.98 16 17 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 18 C -0.53 -29.47 8.57 25.60 0.22 -29.26 16 19 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 20 C 0.01 0.62 5.30 84.65 0.45 1.06 16 21 N -0.91 -54.62 11.39 21.45 0.24 -54.37 16 22 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 26 C 0.12 6.12 5.41 86.36 0.47 6.58 16 27 N -0.52 -14.86 7.80 -181.17 -1.41 -16.27 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 0.92 8.08 -2.39 -0.02 0.90 16 30 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 32 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 33 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.44 11.03 8.21 -92.71 -0.76 10.27 16 35 H 0.13 4.59 4.32 -47.09 -0.20 4.39 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.05 1.73 8.14 -2.38 -0.02 1.72 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 42 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.09 5.11 5.13 -2.39 -0.01 5.09 16 Total: -1.00 -74.21 353.30 2.72 -71.49 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.09 Total: 22.48 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 5.98 Total: 21.26 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -5.28 Total: -117.82 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -0.09 Total: -43.45 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -74.21 2.72 -71.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.582 kcal (2) G-P(sol) polarization free energy of solvation -74.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds