Wall clock time and date at job start Tue Mar 31 2020 11:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35903 * 117.00332 * 2 1 4 4 C 1.38555 * 119.99380 * 0.02562 * 3 2 1 5 5 C 1.39225 * 119.82008 * 179.97438 * 4 3 2 6 6 C 1.48435 * 120.09241 * 179.97438 * 5 4 3 7 7 N 1.30760 * 126.41093 * 359.97438 * 6 5 4 8 8 O 1.21291 * 110.10118 * 179.97438 * 7 6 5 9 9 C 1.33669 * 110.02133 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.43819 * 179.97438 * 9 8 7 11 11 N 1.46911 * 109.46831 * 270.02219 * 10 9 8 12 12 C 1.46902 * 110.99614 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47149 * 324.99463 * 12 11 10 14 14 C 1.52997 * 109.47094 * 85.00357 * 12 11 10 15 15 C 1.50706 * 109.46577 * 205.00147 * 12 11 10 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99394 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47474 * 90.00322 * 19 17 15 21 21 H 1.48510 * 109.47116 * 210.00055 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99887 * 19 17 15 23 23 N 1.30976 * 107.12424 * 0.23968 * 9 8 7 24 24 C 1.39360 * 119.81649 * 0.25828 * 5 4 3 25 25 C 1.38031 * 119.98865 * 359.48505 * 24 5 4 26 26 C 1.38245 * 120.18062 * 0.49389 * 25 24 5 27 27 C 1.50699 * 119.90732 * 179.76404 * 26 25 24 28 28 H 1.08995 * 109.46995 * 300.00052 * 1 2 3 29 29 H 1.09003 * 109.47074 * 60.00108 * 1 2 3 30 30 H 1.09001 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.09045 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.47347 * 150.02671 * 10 9 8 33 33 H 1.09000 * 109.47418 * 30.01979 * 10 9 8 34 34 H 1.00896 * 110.99617 * 303.95659 * 11 10 9 35 35 H 1.09002 * 109.47153 * 299.99508 * 14 12 11 36 36 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 37 37 H 1.09004 * 109.47261 * 59.99681 * 14 12 11 38 38 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.00387 * 179.74657 * 24 5 4 40 40 H 1.08003 * 119.91035 * 180.25859 * 25 24 5 41 41 H 1.08997 * 109.47291 * 270.01707 * 27 26 25 42 42 H 1.09002 * 109.47104 * 30.02534 * 27 26 25 43 43 H 1.09004 * 109.47174 * 150.02066 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2914 2.3729 0.0005 5 6 1.9273 3.6114 0.0011 6 6 1.1247 4.8601 0.0011 7 7 -0.1802 4.9440 0.0001 8 8 -0.5231 6.1074 0.0010 9 6 0.5522 6.9014 0.0031 10 6 0.5521 8.4085 0.0041 11 7 0.5536 8.8990 -1.3806 12 6 0.5529 10.3676 -1.4188 13 1 -0.0378 10.7523 -0.5875 14 6 1.9895 10.8813 -1.3046 15 6 -0.0462 10.8359 -2.7199 16 1 -0.3915 10.1148 -3.4459 17 6 -0.1526 12.1850 -2.9837 18 7 0.2693 13.0631 -2.1002 19 14 -0.8959 12.7655 -4.5961 20 1 -2.3621 12.9349 -4.4328 21 1 -0.2876 14.0641 -4.9825 22 1 -0.6287 11.7593 -5.6550 23 7 1.6060 6.1236 -0.0017 24 6 3.3194 3.6756 -0.0044 25 6 4.0637 2.5131 0.0005 26 6 3.4320 1.2834 0.0004 27 6 4.2506 0.0182 0.0003 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3180 0.0005 32 1 1.4416 8.7715 0.5191 33 1 -0.3384 8.7714 0.5172 34 1 1.3355 8.5239 -1.8962 35 1 2.4229 10.5426 -0.3636 36 1 1.9890 11.9710 -1.3334 37 1 2.5802 10.4965 -2.1360 38 1 0.1948 14.0122 -2.2860 39 1 3.8158 4.6347 -0.0081 40 1 5.1425 2.5644 0.0004 41 1 4.4482 -0.2866 -1.0273 42 1 5.1950 0.1965 0.5145 43 1 3.7006 -0.7705 0.5138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602871218.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:43 Heat of formation + Delta-G solvation = 36.062666 kcal Electronic energy + Delta-G solvation = -25200.190164 eV Core-core repulsion = 21441.293895 eV Total energy + Delta-G solvation = -3758.896269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.65888 -41.33903 -38.71666 -38.19060 -36.88542 -35.19195 -34.13011 -32.97833 -31.37086 -30.57270 -28.60332 -28.22587 -27.28491 -26.82622 -25.06585 -23.72736 -22.86484 -22.20903 -22.01303 -19.53689 -19.21796 -18.48949 -17.94226 -17.39299 -16.81879 -16.78860 -16.63424 -16.27720 -15.85732 -15.78855 -15.20460 -14.86870 -14.57885 -14.55154 -14.35736 -13.73198 -13.67411 -13.60610 -13.36106 -13.22176 -12.98204 -12.85895 -12.77787 -12.72617 -12.47993 -12.45847 -12.19816 -12.16569 -12.10999 -12.07607 -11.92242 -11.27731 -11.06617 -10.46091 -9.86901 -9.20634 -9.18058 -8.08828 -6.18647 -0.49778 0.18121 0.29306 1.28883 1.45310 1.46952 1.56450 1.68889 2.19917 2.35746 2.46352 2.63886 2.82244 3.20768 3.55364 3.67660 3.71360 3.96068 4.07639 4.12804 4.27202 4.28938 4.30416 4.39952 4.48667 4.56487 4.64403 4.67446 4.72141 4.76155 4.82274 4.86690 4.94086 5.07130 5.12715 5.25274 5.35573 5.36506 5.40359 5.65398 5.71610 5.79827 6.23562 6.25372 6.51563 6.60322 6.92159 6.97587 7.50354 8.96492 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.002257 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.024887 B =12400.132396 C =12729.726137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.318 6.318 3 C 0.115 3.885 4 C -0.178 4.178 5 C -0.012 4.012 6 C 0.205 3.795 7 N -0.395 5.395 8 O 0.079 5.921 9 C 0.215 3.785 10 C 0.150 3.850 11 N -0.683 5.683 12 C 0.220 3.780 13 H 0.024 0.976 14 C -0.160 4.160 15 C -0.516 4.516 16 H 0.052 0.948 17 C 0.014 3.986 18 N -0.917 5.917 19 Si 0.956 3.044 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.273 1.273 23 N -0.486 5.486 24 C -0.112 4.112 25 C -0.080 4.080 26 C -0.100 4.100 27 C -0.104 4.104 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.336 0.664 35 H 0.034 0.966 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.262 0.738 39 H 0.138 0.862 40 H 0.170 0.830 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.414 -24.783 7.116 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.232 6.232 3 C 0.069 3.931 4 C -0.199 4.199 5 C -0.014 4.014 6 C -0.065 4.065 7 N -0.104 5.104 8 O 0.022 5.978 9 C -0.006 4.006 10 C 0.019 3.981 11 N -0.316 5.316 12 C 0.112 3.888 13 H 0.042 0.958 14 C -0.220 4.220 15 C -0.555 4.555 16 H 0.071 0.929 17 C -0.185 4.185 18 N -0.557 5.557 19 Si 0.783 3.217 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.198 1.198 23 N -0.220 5.220 24 C -0.132 4.132 25 C -0.097 4.097 26 C -0.102 4.102 27 C -0.161 4.161 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.146 0.854 31 H 0.151 0.849 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.154 0.846 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.155 0.845 40 H 0.188 0.812 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.674 -25.596 7.077 27.156 hybrid contribution -0.192 1.383 -0.590 1.516 sum 5.482 -24.213 6.488 25.659 Atomic orbital electron populations 1.23326 0.76845 1.05802 1.01671 1.86050 1.22850 1.25644 1.88630 1.18774 0.92343 0.83956 0.97997 1.21209 1.00696 0.91077 1.06920 1.17244 0.92717 0.86612 1.04837 1.24263 0.87700 0.93657 1.00891 1.74820 1.15401 0.97960 1.22223 1.85272 1.36057 1.11165 1.65332 1.29023 0.79745 0.98662 0.93132 1.20553 1.05230 0.78513 0.93791 1.60745 1.49812 1.11285 1.09732 1.19003 0.92703 0.80694 0.96393 0.95847 1.22280 0.98146 1.03912 0.97639 1.21382 1.39433 0.91487 1.03188 0.92939 1.25608 0.96110 0.96901 0.99895 1.69972 1.47963 1.01671 1.36133 0.85582 0.78497 0.77413 0.80231 1.20373 1.20945 1.19814 1.71995 1.28930 0.99795 1.21297 1.21269 0.91313 1.00504 1.00122 1.21187 1.01608 0.89389 0.97541 1.19860 0.90396 0.97803 1.02117 1.20715 0.99226 0.92776 1.03364 0.92464 0.92673 0.85357 0.84851 0.89435 0.86399 0.84646 0.94686 0.91560 0.95132 0.92902 0.84451 0.81237 0.90176 0.89292 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.32 -5.97 9.53 -92.46 -0.88 -6.86 16 3 C 0.11 2.44 6.65 22.48 0.15 2.59 16 4 C -0.18 -4.38 8.68 22.58 0.20 -4.19 16 5 C -0.01 -0.33 5.87 -20.05 -0.12 -0.45 16 6 C 0.20 6.58 7.80 137.30 1.07 7.65 16 7 N -0.40 -13.23 11.86 -59.13 -0.70 -13.93 16 8 O 0.08 2.66 11.29 74.61 0.84 3.50 16 9 C 0.22 6.95 8.01 88.36 0.71 7.66 16 10 C 0.15 4.75 6.11 85.56 0.52 5.27 16 11 N -0.68 -26.99 6.22 -499.43 -3.11 -30.09 16 12 C 0.22 10.28 2.57 44.17 0.11 10.39 16 13 H 0.02 1.18 7.80 -2.39 -0.02 1.16 16 14 C -0.16 -7.14 8.94 71.98 0.64 -6.50 16 15 C -0.52 -27.54 8.84 25.60 0.23 -27.31 16 16 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 17 C 0.01 0.73 5.30 84.66 0.45 1.18 16 18 N -0.92 -50.63 11.32 21.45 0.24 -50.39 16 19 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 23 N -0.49 -15.92 11.26 -302.49 -3.40 -19.32 16 24 C -0.11 -2.57 9.70 22.49 0.22 -2.35 16 25 C -0.08 -1.37 9.68 22.22 0.22 -1.15 16 26 C -0.10 -1.80 5.90 -19.73 -0.12 -1.91 16 27 C -0.10 -1.24 9.78 71.24 0.70 -0.55 16 28 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 29 H 0.05 0.76 7.66 -2.39 -0.02 0.74 16 30 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.13 3.22 6.10 -2.91 -0.02 3.20 16 32 H 0.09 2.56 7.44 -2.39 -0.02 2.54 16 33 H 0.12 3.45 8.05 -2.39 -0.02 3.43 16 34 H 0.34 13.07 8.47 -89.70 -0.76 12.31 16 35 H 0.03 1.33 7.45 -2.39 -0.02 1.31 16 36 H 0.07 3.34 6.07 -2.39 -0.01 3.32 16 37 H 0.03 1.32 8.13 -2.38 -0.02 1.30 16 38 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 39 H 0.14 3.12 7.87 -2.91 -0.02 3.10 16 40 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.09 0.70 8.08 -2.39 -0.02 0.68 16 43 H 0.07 0.88 7.52 -2.38 -0.02 0.86 16 Total: -1.00 -62.45 364.74 1.39 -61.06 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.28 Total: 19.25 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 6.09 Total: -8.32 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -6.97 Total: -113.73 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: -0.04 Total: -3.35 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -62.45 1.39 -61.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602871218.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.126 kcal (2) G-P(sol) polarization free energy of solvation -62.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds