Wall clock time and date at job start Tue Mar 31 2020 11:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38162 * 120.03306 * 2 1 4 4 C 1.38240 * 120.05940 * 180.29863 * 3 2 1 5 5 C 1.38284 * 120.11113 * 359.67271 * 4 3 2 6 6 C 1.38125 * 120.05396 * 0.02562 * 5 4 3 7 7 C 1.38715 * 120.02740 * 179.67308 * 2 1 3 8 8 O 1.35904 * 120.05453 * 0.02562 * 7 2 1 9 9 C 1.42904 * 116.99848 * 179.72440 * 8 7 2 10 10 C 1.53000 * 109.46804 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47398 * 305.00087 * 10 9 8 12 12 O 1.42896 * 109.47231 * 65.00154 * 10 9 8 13 13 C 1.52997 * 109.47060 * 184.99918 * 10 9 8 14 14 N 1.46496 * 109.47484 * 175.00385 * 13 10 9 15 15 C 1.35312 * 125.87108 * 124.99816 * 14 13 10 16 16 C 1.35349 * 106.17466 * 180.02562 * 15 14 13 17 17 C 1.50706 * 126.75126 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47021 * 125.00062 * 17 16 15 19 19 H 1.07996 * 120.00260 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99665 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00129 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99802 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47186 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46919 * 120.00471 * 22 20 18 25 25 H 1.48501 * 109.46834 * 240.00272 * 22 20 18 26 26 N 1.33775 * 106.49918 * 359.97438 * 16 15 14 27 27 N 1.28639 * 108.88218 * 359.73748 * 26 16 15 28 28 H 1.08991 * 109.47430 * 270.32126 * 1 2 3 29 29 H 1.08999 * 109.46818 * 30.33032 * 1 2 3 30 30 H 1.09007 * 109.47109 * 150.32074 * 1 2 3 31 31 H 1.08004 * 119.96951 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.94728 * 179.69934 * 4 3 2 33 33 H 1.08000 * 119.97590 * 180.02562 * 5 4 3 34 34 H 1.08008 * 120.02912 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47048 * 59.99629 * 9 8 7 36 36 H 1.08991 * 109.47029 * 299.99688 * 9 8 7 37 37 H 0.96708 * 114.00101 * 59.99127 * 12 10 9 38 38 H 1.09000 * 109.47325 * 295.00173 * 13 10 9 39 39 H 1.09008 * 109.47017 * 55.00082 * 13 10 9 40 40 H 1.07997 * 126.91273 * 0.02750 * 15 14 13 41 41 H 1.09004 * 109.46897 * 244.99916 * 17 16 15 42 42 H 1.08999 * 109.46824 * 4.99784 * 17 16 15 43 43 H 0.97008 * 120.00112 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1961 0.0000 4 6 3.5809 1.1968 -0.0062 5 6 4.2752 0.0009 -0.0057 6 6 3.5886 -1.1976 0.0006 7 6 2.2011 -1.2010 0.0069 8 8 1.5233 -2.3789 0.0130 9 6 2.3033 -3.5762 0.0138 10 6 1.3730 -4.7909 0.0217 11 1 0.6876 -4.7182 0.8661 12 8 0.6263 -4.8269 -1.1961 13 6 2.2043 -6.0691 0.1482 14 7 1.3102 -7.2225 0.2757 15 6 1.3171 -8.3221 -0.5128 16 6 0.3348 -9.1275 -0.0454 17 6 -0.0594 -10.4771 -0.5880 18 6 -0.0095 -11.4978 0.5195 19 1 0.2792 -11.1992 1.5165 20 6 -0.3324 -12.8129 0.2600 21 7 -0.6834 -13.1765 -0.9540 22 14 -0.2698 -14.0783 1.6328 23 1 0.1518 -13.4192 2.8948 24 1 -1.6158 -14.6788 1.8141 25 1 0.7037 -15.1429 1.2805 26 7 -0.2175 -8.4898 0.9928 27 7 0.3868 -7.3667 1.1609 28 1 -0.3634 0.0058 1.0275 29 1 -0.3633 0.8870 -0.5190 30 1 -0.3634 -0.8929 -0.5089 31 1 1.6585 2.1315 -0.0004 32 1 4.1196 2.1328 -0.0111 33 1 5.3552 0.0039 -0.0101 34 1 4.1313 -2.1315 0.0007 35 1 2.9356 -3.5974 0.9014 36 1 2.9287 -3.6030 -0.8784 37 1 1.1732 -4.8914 -1.9911 38 1 2.8258 -6.1877 -0.7393 39 1 2.8403 -6.0030 1.0310 40 1 1.9743 -8.5178 -1.3471 41 1 -1.0715 -10.4258 -0.9895 42 1 0.6315 -10.7661 -1.3800 43 1 -0.9103 -14.1018 -1.1367 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603256766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:47 Heat of formation + Delta-G solvation = 2.775417 kcal Electronic energy + Delta-G solvation = -24999.443843 eV Core-core repulsion = 21239.104131 eV Total energy + Delta-G solvation = -3760.339712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.03275 -41.27020 -39.28875 -37.86502 -35.88250 -34.92977 -33.75836 -32.86947 -31.96036 -30.80161 -29.39837 -27.96756 -27.43665 -25.48054 -24.24586 -22.78878 -22.64501 -22.27570 -21.56896 -19.21798 -18.56501 -18.28790 -17.68894 -17.46403 -17.19331 -16.54096 -16.53286 -16.36857 -15.82496 -15.57473 -15.43842 -14.93452 -14.56703 -14.33862 -14.27585 -14.01787 -13.98767 -13.70041 -13.40102 -13.18561 -12.95497 -12.86702 -12.65922 -12.51588 -12.34668 -12.24026 -11.99749 -11.88147 -11.79242 -11.65651 -11.46883 -11.31147 -10.72902 -10.57774 -9.83300 -9.76671 -9.07562 -8.18591 -6.27119 0.38097 0.49650 0.76503 1.39492 1.41496 1.45662 1.54698 1.79507 2.16306 2.44652 2.81805 3.14063 3.20550 3.43340 3.57661 3.73275 3.76954 3.86154 3.97428 4.00323 4.20038 4.22205 4.30031 4.30667 4.41669 4.47484 4.50345 4.62731 4.68906 4.76167 4.77442 4.89466 4.98132 5.29841 5.31004 5.40491 5.46041 5.52827 5.55077 5.61759 5.77383 5.82900 5.89658 6.23309 6.44468 6.69982 6.81499 7.39513 7.73251 8.92466 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.040065 B = 0.001952 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.701328 B =14341.688834 C =14514.471973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.141 4.141 3 C -0.091 4.091 4 C -0.161 4.161 5 C -0.092 4.092 6 C -0.212 4.212 7 C 0.107 3.893 8 O -0.324 6.324 9 C 0.035 3.965 10 C 0.105 3.895 11 H 0.091 0.909 12 O -0.568 6.568 13 C 0.083 3.917 14 N -0.278 5.278 15 C -0.045 4.045 16 C -0.011 4.011 17 C 0.102 3.898 18 C -0.522 4.522 19 H 0.044 0.956 20 C 0.007 3.993 21 N -0.927 5.927 22 Si 0.963 3.037 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.270 1.270 26 N -0.312 5.312 27 N -0.121 5.121 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.392 0.608 38 H 0.158 0.842 39 H 0.133 0.867 40 H 0.229 0.771 41 H 0.005 0.995 42 H 0.036 0.964 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.811 30.393 -2.226 34.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.141 4.141 3 C -0.109 4.109 4 C -0.179 4.179 5 C -0.110 4.110 6 C -0.230 4.230 7 C 0.062 3.938 8 O -0.238 6.238 9 C -0.041 4.041 10 C 0.045 3.955 11 H 0.109 0.891 12 O -0.376 6.376 13 C -0.037 4.037 14 N -0.074 5.074 15 C -0.195 4.195 16 C -0.150 4.150 17 C 0.063 3.937 18 C -0.561 4.561 19 H 0.062 0.938 20 C -0.191 4.191 21 N -0.567 5.567 22 Si 0.788 3.212 23 H -0.199 1.199 24 H -0.204 1.204 25 H -0.195 1.195 26 N -0.178 5.178 27 N -0.100 5.100 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.242 0.758 38 H 0.176 0.824 39 H 0.151 0.849 40 H 0.245 0.755 41 H 0.023 0.977 42 H 0.054 0.946 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.355 30.919 -0.700 34.096 hybrid contribution 0.727 -1.443 -0.582 1.717 sum 15.082 29.476 -1.282 33.135 Atomic orbital electron populations 1.20594 0.90573 1.02731 1.02251 1.19592 0.97017 0.91179 1.06360 1.21182 0.94823 0.96956 0.97970 1.21403 0.94115 0.99282 1.03076 1.21309 1.01135 0.91613 0.96976 1.21527 0.92221 1.00915 1.08383 1.19112 0.91314 0.85469 0.97921 1.86100 1.36299 1.12598 1.88779 1.23494 0.93638 0.81975 1.04961 1.22050 0.93799 0.90689 0.88999 0.89146 1.86760 1.38274 1.96423 1.16153 1.23069 0.90572 0.80877 1.09227 1.47273 1.24458 1.15527 1.20105 1.23747 1.04888 0.88283 1.02625 1.22679 0.97177 0.99571 0.95540 1.17386 0.95711 0.85193 0.95396 1.21309 1.45692 0.93491 0.95570 0.93789 1.25805 0.94752 1.00437 0.98122 1.70046 1.47048 1.18347 1.21269 0.85432 0.78040 0.78643 0.79104 1.19891 1.20362 1.19479 1.74980 1.23672 1.01076 1.18075 1.78027 1.02313 1.15144 1.14511 0.91558 0.90234 0.92753 0.83787 0.83776 0.83470 0.83392 0.88570 0.88155 0.75819 0.82411 0.84916 0.75476 0.97736 0.94563 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 9.79 71.24 0.70 -1.09 16 2 C -0.14 -2.50 5.89 -19.77 -0.12 -2.62 16 3 C -0.09 -1.25 9.70 22.25 0.22 -1.03 16 4 C -0.16 -1.84 10.04 22.28 0.22 -1.61 16 5 C -0.09 -1.02 10.04 22.25 0.22 -0.80 16 6 C -0.21 -2.74 9.04 22.36 0.20 -2.54 16 7 C 0.11 1.91 6.66 22.51 0.15 2.06 16 8 O -0.32 -6.27 9.15 -87.83 -0.80 -7.07 16 9 C 0.03 0.39 4.37 71.98 0.31 0.71 16 10 C 0.11 1.80 3.33 30.59 0.10 1.90 16 11 H 0.09 2.23 8.01 -2.39 -0.02 2.21 16 12 O -0.57 -12.15 13.25 -144.34 -1.91 -14.06 16 13 C 0.08 1.18 6.09 86.38 0.53 1.71 16 14 N -0.28 -8.29 3.38 -347.74 -1.18 -9.46 16 15 C -0.05 -1.51 11.49 83.49 0.96 -0.56 16 16 C -0.01 -0.54 6.44 41.60 0.27 -0.27 16 17 C 0.10 5.56 5.55 29.10 0.16 5.72 16 18 C -0.52 -31.17 9.09 25.60 0.23 -30.94 16 19 H 0.04 2.70 7.74 -2.91 -0.02 2.67 16 20 C 0.01 0.40 5.46 84.66 0.46 0.87 16 21 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 22 Si 0.96 45.95 29.54 68.60 2.03 47.98 16 23 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 N -0.31 -15.51 12.40 -48.59 -0.60 -16.12 16 27 N -0.12 -4.95 12.83 37.02 0.48 -4.47 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 30 H 0.05 1.12 7.53 -2.38 -0.02 1.10 16 31 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.14 0.94 8.06 -2.91 -0.02 0.92 16 33 H 0.15 0.86 8.06 -2.91 -0.02 0.83 16 34 H 0.15 1.12 6.30 -2.91 -0.02 1.10 16 35 H 0.10 0.70 7.66 -2.39 -0.02 0.68 16 36 H 0.10 0.52 7.66 -2.39 -0.02 0.50 16 37 H 0.39 4.43 9.05 -74.05 -0.67 3.76 16 38 H 0.16 0.73 8.07 -2.39 -0.02 0.72 16 39 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.23 5.18 8.06 -2.91 -0.02 5.16 16 41 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 42 H 0.04 1.92 8.12 -2.39 -0.02 1.90 16 43 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 Total: -1.00 -85.93 371.34 3.27 -82.66 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 0.36 Total: 4.68 kcal Atomic # 6 Polarization: -33.12 SS G_CDS: 4.62 Total: -28.50 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -1.02 Total: -85.70 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -2.72 Total: -21.13 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -85.93 3.27 -82.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603256766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.438 kcal (2) G-P(sol) polarization free energy of solvation -85.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds