Wall clock time and date at job start Tue Mar 31 2020 11:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38166 * 120.02308 * 2 1 4 4 C 1.38247 * 120.05634 * 179.97438 * 3 2 1 5 5 C 1.38292 * 120.10520 * 0.02562 * 4 3 2 6 6 C 1.38124 * 120.05808 * 359.68839 * 5 4 3 7 7 C 1.38705 * 120.02913 * 179.97438 * 2 1 3 8 8 O 1.35895 * 120.05832 * 0.02562 * 7 2 1 9 9 C 1.42898 * 117.00130 * 179.97438 * 8 7 2 10 10 C 1.53004 * 109.47203 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47096 * 55.00200 * 10 9 8 12 12 O 1.42906 * 109.46716 * 295.00159 * 10 9 8 13 13 C 1.52998 * 109.47033 * 175.00470 * 10 9 8 14 14 N 1.46505 * 109.46658 * 185.00045 * 13 10 9 15 15 C 1.35310 * 125.86763 * 125.29510 * 14 13 10 16 16 C 1.35348 * 106.17503 * 180.17814 * 15 14 13 17 17 C 1.50700 * 126.75241 * 179.84708 * 16 15 14 18 18 C 1.50702 * 109.46869 * 124.71667 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48501 * 109.47188 * 90.00793 * 22 20 18 24 24 H 1.48501 * 109.47085 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47634 * 330.00608 * 22 20 18 26 26 N 1.33770 * 106.49624 * 359.59617 * 16 15 14 27 27 N 1.28632 * 108.88455 * 0.25241 * 26 16 15 28 28 H 1.08999 * 109.47574 * 270.01943 * 1 2 3 29 29 H 1.09001 * 109.47934 * 30.02419 * 1 2 3 30 30 H 1.09003 * 109.47216 * 150.02269 * 1 2 3 31 31 H 1.08005 * 119.97585 * 0.02562 * 3 2 1 32 32 H 1.07996 * 119.94922 * 180.02562 * 4 3 2 33 33 H 1.08003 * 119.96911 * 179.97438 * 5 4 3 34 34 H 1.07997 * 120.02566 * 180.31312 * 6 5 4 35 35 H 1.09005 * 109.47079 * 60.00544 * 9 8 7 36 36 H 1.09002 * 109.47458 * 300.00080 * 9 8 7 37 37 H 0.96699 * 114.00201 * 299.99454 * 12 10 9 38 38 H 1.09001 * 109.47517 * 64.99978 * 13 10 9 39 39 H 1.08999 * 109.47139 * 304.99631 * 13 10 9 40 40 H 1.08000 * 126.91429 * 0.03609 * 15 14 13 41 41 H 1.09004 * 109.47210 * 4.71960 * 17 16 15 42 42 H 1.08994 * 109.47551 * 244.71612 * 17 16 15 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5808 1.1971 0.0005 5 6 4.2751 0.0011 0.0005 6 6 3.5886 -1.1974 0.0065 7 6 2.2011 -1.2009 0.0005 8 8 1.5235 -2.3788 0.0005 9 6 2.3035 -3.5761 0.0005 10 6 1.3733 -4.7909 -0.0001 11 1 0.6848 -4.7208 -0.8422 12 8 0.6312 -4.8231 1.2207 13 6 2.2043 -6.0694 -0.1257 14 7 1.3096 -7.2233 -0.2464 15 6 1.3312 -8.1428 -1.2389 16 6 0.3401 -9.0214 -0.9603 17 6 -0.0458 -10.2320 -1.7707 18 6 -0.0094 -11.4564 -0.8929 19 1 0.2652 -11.3669 0.1478 20 6 -0.3328 -12.6902 -1.4168 21 7 -0.6676 -12.7991 -2.6840 22 14 -0.2952 -14.2067 -0.3269 23 1 -1.6280 -14.3998 0.2988 24 1 0.0437 -15.3974 -1.1470 25 1 0.7285 -14.0286 0.7340 26 7 -0.2259 -8.6070 0.1787 27 7 0.3714 -7.5394 0.5760 28 1 -0.3634 0.0003 1.0276 29 1 -0.3635 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6583 2.1316 0.0004 32 1 4.1194 2.1331 0.0010 33 1 5.3552 0.0043 0.0005 34 1 4.1314 -2.1311 0.0116 35 1 2.9323 -3.6000 0.8906 36 1 2.9324 -3.6000 -0.8894 37 1 1.1810 -4.8852 2.0137 38 1 2.8291 -6.1852 0.7599 39 1 2.8370 -6.0060 -1.0110 40 1 2.0025 -8.1689 -2.0845 41 1 0.6556 -10.3556 -2.5959 42 1 -1.0525 -10.0985 -2.1665 43 1 -0.8948 -13.6671 -3.0526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603256767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:49 Heat of formation + Delta-G solvation = 4.746385 kcal Electronic energy + Delta-G solvation = -25005.687100 eV Core-core repulsion = 21245.432856 eV Total energy + Delta-G solvation = -3760.254245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.01028 -41.26127 -39.23845 -37.82645 -35.84109 -34.91348 -33.75396 -32.87755 -31.88433 -30.78647 -29.40483 -27.94834 -27.42016 -25.45133 -24.21760 -22.75742 -22.61215 -22.25229 -21.63183 -19.18616 -18.55342 -18.28899 -17.82633 -17.22523 -17.09831 -16.53801 -16.51558 -16.33557 -15.87018 -15.53470 -15.41572 -14.93958 -14.43908 -14.40484 -14.24092 -14.01604 -13.96920 -13.71579 -13.38377 -13.18379 -12.94110 -12.84161 -12.66976 -12.46027 -12.32239 -12.23923 -11.98009 -11.85551 -11.75068 -11.65231 -11.41665 -11.24252 -10.72715 -10.57394 -9.82059 -9.76426 -9.07080 -8.18465 -6.27016 0.38341 0.49974 0.78832 1.40058 1.42722 1.46758 1.53229 1.81139 2.17414 2.44752 2.82089 3.14190 3.28592 3.46568 3.57917 3.72396 3.80829 3.86991 3.96114 4.01807 4.19990 4.22531 4.26779 4.33431 4.41789 4.48922 4.51520 4.67888 4.71358 4.76541 4.77721 4.84938 4.98328 5.29884 5.30749 5.40744 5.46331 5.53082 5.55416 5.62017 5.77278 5.84964 5.90172 6.23364 6.45123 6.75954 6.81320 7.39469 7.77672 8.92413 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.038972 B = 0.001955 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.299726 B =14321.278702 C =14473.436075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.141 4.141 3 C -0.092 4.092 4 C -0.161 4.161 5 C -0.093 4.093 6 C -0.212 4.212 7 C 0.108 3.892 8 O -0.323 6.323 9 C 0.035 3.965 10 C 0.106 3.894 11 H 0.090 0.910 12 O -0.559 6.559 13 C 0.082 3.918 14 N -0.285 5.285 15 C -0.056 4.056 16 C -0.012 4.012 17 C 0.102 3.898 18 C -0.523 4.523 19 H 0.044 0.956 20 C 0.007 3.993 21 N -0.927 5.927 22 Si 0.963 3.037 23 H -0.277 1.277 24 H -0.273 1.273 25 H -0.270 1.270 26 N -0.318 5.318 27 N -0.095 5.095 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.388 0.612 38 H 0.130 0.870 39 H 0.158 0.842 40 H 0.227 0.773 41 H 0.035 0.965 42 H 0.005 0.995 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.671 30.310 3.629 34.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.142 4.142 3 C -0.109 4.109 4 C -0.179 4.179 5 C -0.110 4.110 6 C -0.231 4.231 7 C 0.062 3.938 8 O -0.237 6.237 9 C -0.041 4.041 10 C 0.045 3.955 11 H 0.108 0.892 12 O -0.366 6.366 13 C -0.038 4.038 14 N -0.081 5.081 15 C -0.206 4.206 16 C -0.149 4.149 17 C 0.063 3.937 18 C -0.561 4.561 19 H 0.062 0.938 20 C -0.191 4.191 21 N -0.567 5.567 22 Si 0.788 3.212 23 H -0.203 1.203 24 H -0.198 1.198 25 H -0.195 1.195 26 N -0.185 5.185 27 N -0.074 5.074 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.237 0.763 38 H 0.148 0.852 39 H 0.176 0.824 40 H 0.244 0.756 41 H 0.053 0.947 42 H 0.023 0.977 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.197 30.594 4.411 34.015 hybrid contribution 0.759 -1.357 -0.281 1.580 sum 14.956 29.237 4.130 33.099 Atomic orbital electron populations 1.20587 0.90560 1.02664 1.02264 1.19588 0.97017 0.91184 1.06380 1.21184 0.94818 0.96963 0.97975 1.21404 0.94121 0.99275 1.03107 1.21310 1.01128 0.91627 0.96983 1.21525 0.92242 1.00895 1.08388 1.19101 0.91292 0.85485 0.97875 1.86094 1.36294 1.12583 1.88758 1.23511 0.93683 0.82009 1.04907 1.22023 0.93636 0.90495 0.89307 0.89249 1.86778 1.37790 1.96275 1.15721 1.23071 0.90611 0.80655 1.09439 1.47383 1.24137 1.20421 1.16158 1.23778 1.05052 0.92868 0.98876 1.22676 0.96949 0.99928 0.95364 1.17382 0.95728 0.87389 0.93215 1.21285 1.46032 0.92668 0.96118 0.93753 1.25813 0.94751 1.02071 0.96510 1.70044 1.47230 1.25524 1.13928 0.85480 0.78493 0.78572 0.78658 1.20329 1.19839 1.19501 1.75022 1.24429 1.06020 1.12985 1.78210 1.01121 1.10767 1.17290 0.91545 0.90275 0.92796 0.83806 0.83803 0.83498 0.83398 0.88731 0.88139 0.76293 0.85201 0.82391 0.75631 0.94663 0.97732 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 9.79 71.24 0.70 -1.06 16 2 C -0.14 -2.48 5.89 -19.77 -0.12 -2.60 16 3 C -0.09 -1.24 9.70 22.25 0.22 -1.03 16 4 C -0.16 -1.83 10.04 22.28 0.22 -1.61 16 5 C -0.09 -1.02 10.04 22.26 0.22 -0.80 16 6 C -0.21 -2.71 9.04 22.37 0.20 -2.51 16 7 C 0.11 1.90 6.66 22.50 0.15 2.05 16 8 O -0.32 -6.13 9.15 -87.73 -0.80 -6.93 16 9 C 0.03 0.38 4.37 71.98 0.31 0.69 16 10 C 0.11 1.77 3.44 30.60 0.11 1.87 16 11 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 12 O -0.56 -12.88 12.33 -144.34 -1.78 -14.66 16 13 C 0.08 1.16 6.14 86.38 0.53 1.69 16 14 N -0.29 -8.44 3.44 -347.73 -1.20 -9.64 16 15 C -0.06 -1.89 11.49 83.49 0.96 -0.93 16 16 C -0.01 -0.54 6.44 41.60 0.27 -0.28 16 17 C 0.10 5.55 5.55 29.10 0.16 5.71 16 18 C -0.52 -31.22 9.09 25.60 0.23 -30.98 16 19 H 0.04 2.71 7.74 -2.91 -0.02 2.69 16 20 C 0.01 0.39 5.46 84.66 0.46 0.85 16 21 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16 22 Si 0.96 45.99 29.54 68.60 2.03 48.02 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 26 N -0.32 -15.75 12.40 -48.60 -0.60 -16.36 16 27 N -0.09 -3.83 12.09 37.02 0.45 -3.38 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 30 H 0.05 1.08 7.53 -2.39 -0.02 1.07 16 31 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.14 0.94 8.06 -2.91 -0.02 0.91 16 33 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 34 H 0.15 1.10 6.30 -2.91 -0.02 1.08 16 35 H 0.09 0.58 7.65 -2.38 -0.02 0.56 16 36 H 0.10 0.57 7.68 -2.39 -0.02 0.55 16 37 H 0.39 5.84 9.05 -74.06 -0.67 5.17 16 38 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.16 0.84 8.07 -2.39 -0.02 0.82 16 40 H 0.23 5.26 8.06 -2.91 -0.02 5.23 16 41 H 0.04 1.87 8.12 -2.38 -0.02 1.85 16 42 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -85.16 370.03 3.36 -81.80 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 0.36 Total: 5.84 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 4.63 Total: -28.93 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -1.07 Total: -85.13 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -2.58 Total: -21.59 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -85.16 3.36 -81.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603256767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.547 kcal (2) G-P(sol) polarization free energy of solvation -85.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds