Wall clock time and date at job start Tue Mar 31 2020 11:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38291 * 119.97277 * 2 1 4 4 C 1.38247 * 120.11102 * 180.02562 * 3 2 1 5 5 C 1.38165 * 120.05317 * 359.67910 * 4 3 2 6 6 C 1.38711 * 119.94770 * 0.57576 * 5 4 3 7 7 O 1.35895 * 120.05609 * 179.72249 * 6 5 4 8 8 C 1.42898 * 117.00130 * 359.72117 * 7 6 5 9 9 C 1.53004 * 109.47203 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47096 * 55.00200 * 9 8 7 11 11 O 1.42906 * 109.46716 * 295.00159 * 9 8 7 12 12 C 1.52998 * 109.47033 * 175.00470 * 9 8 7 13 13 N 1.46505 * 109.46658 * 185.00045 * 12 9 8 14 14 C 1.35310 * 125.86763 * 125.29510 * 13 12 9 15 15 C 1.35348 * 106.17503 * 180.17814 * 14 13 12 16 16 C 1.50700 * 126.75241 * 179.84708 * 15 14 13 17 17 C 1.50702 * 109.46869 * 124.71667 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 N 1.33770 * 106.49624 * 359.59617 * 15 14 13 26 26 N 1.28632 * 108.88455 * 0.25241 * 25 15 14 27 27 C 1.38123 * 119.97223 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46730 * 270.01943 * 1 2 3 29 29 H 1.08992 * 109.46911 * 30.02251 * 1 2 3 30 30 H 1.08996 * 109.47157 * 150.02357 * 1 2 3 31 31 H 1.07999 * 119.94384 * 0.02562 * 3 2 1 32 32 H 1.07995 * 119.96794 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.02479 * 180.29271 * 5 4 3 34 34 H 1.09005 * 109.47079 * 60.00544 * 8 7 6 35 35 H 1.09002 * 109.47458 * 300.00080 * 8 7 6 36 36 H 0.96699 * 114.00201 * 299.99454 * 11 9 8 37 37 H 1.09001 * 109.47517 * 64.99978 * 12 9 8 38 38 H 1.08999 * 109.47139 * 304.99631 * 12 9 8 39 39 H 1.08000 * 126.91429 * 0.03609 * 14 13 12 40 40 H 1.09004 * 109.47210 * 4.71960 * 16 15 14 41 41 H 1.08994 * 109.47551 * 244.71612 * 16 15 14 42 42 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.02831 * 0.02620 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5804 1.2013 -0.0005 5 6 4.2752 0.0071 0.0056 6 6 3.5846 -1.1959 0.0003 7 8 4.2658 -2.3718 0.0006 8 6 5.6927 -2.2949 0.0005 9 6 6.2796 -3.7079 0.0002 10 1 5.8746 -4.2694 -0.8416 11 8 5.9366 -4.3663 1.2213 12 6 7.8023 -3.6276 -0.1255 13 7 8.3542 -4.9794 -0.2458 14 6 9.1612 -5.4209 -1.2382 15 6 9.4266 -6.7185 -0.9592 16 6 10.2819 -7.6583 -1.7693 17 6 11.3605 -8.2387 -0.8914 18 1 11.4204 -7.9558 0.1491 19 6 12.2672 -9.1359 -1.4152 20 7 13.2051 -9.6466 -0.6477 21 14 12.1632 -9.6258 -3.2148 22 1 12.9880 -8.6973 -4.0290 23 1 12.6691 -11.0122 -3.3803 24 1 10.7499 -9.5575 -3.6656 25 7 8.7848 -7.0010 0.1799 26 7 8.1589 -5.9497 0.5770 27 6 2.1971 -1.1965 0.0005 28 1 -0.3633 0.0003 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6566 2.1325 0.0004 32 1 4.1176 2.1382 -0.0010 33 1 5.3552 0.0102 0.0100 34 1 6.0280 -1.7620 0.8903 35 1 6.0279 -1.7626 -0.8897 36 1 6.2654 -3.9209 2.0142 37 1 8.2151 -3.1441 0.7598 38 1 8.0637 -3.0484 -1.0111 39 1 9.5194 -4.8529 -2.0840 40 1 10.7395 -7.1129 -2.5948 41 1 9.6628 -8.4635 -2.1648 42 1 13.8431 -10.2775 -1.0162 43 1 1.6571 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603260366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:55 Heat of formation + Delta-G solvation = 35.017114 kcal Electronic energy + Delta-G solvation = -24770.785335 eV Core-core repulsion = 21011.843727 eV Total energy + Delta-G solvation = -3758.941608 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.61530 -40.64482 -38.66268 -37.27077 -34.37190 -33.12014 -32.94336 -31.51631 -31.21401 -30.06130 -28.09589 -27.48666 -26.62407 -23.31248 -23.03524 -22.77188 -21.43751 -21.24266 -20.11295 -18.23418 -17.59496 -17.13059 -16.71271 -16.39947 -16.33188 -16.13809 -15.46654 -15.09437 -14.68892 -14.41041 -14.29951 -14.05853 -13.85029 -13.68921 -13.30580 -13.22884 -12.76801 -12.55619 -12.44659 -12.20425 -12.06328 -11.98470 -11.64035 -11.37941 -11.24198 -11.08455 -10.63140 -10.61393 -10.49702 -10.09025 -9.84123 -9.40698 -9.31371 -9.21965 -8.60269 -8.52974 -8.26051 -5.99032 -3.97001 0.88236 1.03474 2.08346 2.38414 2.87695 3.31750 3.32429 3.40025 3.41121 3.43823 3.89444 4.11143 4.26699 4.35236 4.37723 4.45589 4.47079 4.49667 4.60048 4.71883 4.80373 4.84851 4.91473 5.06489 5.08316 5.16966 5.28465 5.33160 5.41337 5.48148 5.65527 5.69097 5.88236 5.93142 5.99725 6.16391 6.18003 6.34236 6.85710 6.97533 7.06704 7.09816 7.22046 7.36823 7.73975 8.58552 9.08988 9.25933 9.60031 11.14491 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.037790 B = 0.001889 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.755614 B =14820.992376 C =14869.682914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.047 4.047 3 C -0.161 4.161 4 C -0.076 4.076 5 C -0.217 4.217 6 C 0.135 3.865 7 O -0.300 6.300 8 C 0.031 3.969 9 C 0.102 3.898 10 H 0.116 0.884 11 O -0.526 6.526 12 C 0.093 3.907 13 N -0.305 5.305 14 C -0.087 4.087 15 C 0.040 3.960 16 C 0.059 3.941 17 C -0.507 4.507 18 H 0.076 0.924 19 C 0.067 3.933 20 N -0.901 5.901 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.264 1.264 25 N -0.256 5.256 26 N -0.079 5.079 27 C -0.153 4.153 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.375 0.625 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.182 0.818 40 H 0.030 0.970 41 H 0.038 0.962 42 H 0.263 0.737 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.970 26.798 -1.121 34.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.048 4.048 3 C -0.180 4.180 4 C -0.094 4.094 5 C -0.236 4.236 6 C 0.089 3.911 7 O -0.213 6.213 8 C -0.046 4.046 9 C 0.041 3.959 10 H 0.133 0.867 11 O -0.330 6.330 12 C -0.030 4.030 13 N -0.101 5.101 14 C -0.235 4.235 15 C -0.097 4.097 16 C 0.020 3.980 17 C -0.545 4.545 18 H 0.094 0.906 19 C -0.134 4.134 20 N -0.539 5.539 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.189 1.189 25 N -0.124 5.124 26 N -0.058 5.058 27 C -0.171 4.171 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.222 0.778 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.199 0.801 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.866 25.613 -0.228 34.336 hybrid contribution 1.228 0.915 -1.589 2.207 sum -21.638 26.528 -1.817 34.282 Atomic orbital electron populations 1.20827 0.90646 1.03100 1.02706 1.19738 0.96158 0.92227 0.96632 1.20960 0.94186 0.97590 1.05219 1.20932 0.94204 0.97407 0.96897 1.21244 1.00221 0.92289 1.09858 1.19029 0.91834 0.84611 0.95604 1.86151 1.18978 1.27820 1.88344 1.23480 0.79859 0.98620 1.02599 1.22106 0.91083 0.91703 0.91043 0.86654 1.86821 1.78812 1.53065 1.14271 1.22422 0.94515 0.80394 1.05681 1.46942 1.34263 1.10888 1.17988 1.23313 1.03687 0.97903 0.98548 1.22500 0.99122 0.93431 0.94617 1.18153 0.93320 0.92577 0.93942 1.20925 1.10427 1.25092 0.98069 0.90581 1.24980 0.95098 0.95614 0.97667 1.69903 1.17304 1.30932 1.35809 0.86828 0.78874 0.78086 0.85827 1.20267 1.21220 1.18887 1.75149 1.08872 1.17138 1.11217 1.78386 1.19839 0.91400 1.16175 1.20336 0.90912 0.98799 1.07071 0.90758 0.91241 0.91191 0.85938 0.85746 0.85552 0.91032 0.90690 0.77784 0.88203 0.86990 0.80105 0.95162 0.94407 0.92693 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 10.01 36.01 0.36 -0.22 16 2 C -0.05 -0.35 5.88 -104.64 -0.62 -0.97 16 3 C -0.16 -1.11 9.70 -39.56 -0.38 -1.49 16 4 C -0.08 -0.52 10.04 -39.60 -0.40 -0.92 16 5 C -0.22 -1.64 9.04 -39.43 -0.36 -2.00 16 6 C 0.13 1.25 6.69 -39.22 -0.26 0.99 16 7 O -0.30 -2.99 10.10 -24.26 -0.25 -3.24 16 8 C 0.03 0.21 4.37 37.16 0.16 0.37 16 9 C 0.10 0.93 3.44 -26.73 -0.09 0.83 16 10 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 11 O -0.53 -6.19 12.33 -40.08 -0.49 -6.68 16 12 C 0.09 0.81 6.14 -4.04 -0.02 0.79 16 13 N -0.31 -4.74 3.44 -61.26 -0.21 -4.95 16 14 C -0.09 -1.48 11.49 -17.05 -0.20 -1.67 16 15 C 0.04 0.90 6.44 -82.78 -0.53 0.36 16 16 C 0.06 1.45 4.62 -29.03 -0.13 1.31 16 17 C -0.51 -14.89 9.64 -34.44 -0.33 -15.23 16 18 H 0.08 2.50 7.98 -52.49 -0.42 2.08 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 21 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 25 N -0.26 -6.14 12.40 33.29 0.41 -5.73 16 26 N -0.08 -1.59 12.09 60.35 0.73 -0.86 16 27 C -0.15 -1.36 9.64 -39.43 -0.38 -1.74 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 30 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 32 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.13 0.70 6.30 -52.49 -0.33 0.37 16 34 H 0.07 0.35 7.65 -51.93 -0.40 -0.05 16 35 H 0.07 0.35 7.67 -51.93 -0.40 -0.05 16 36 H 0.37 3.01 9.05 45.56 0.41 3.42 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.11 0.59 8.07 -51.93 -0.42 0.17 16 39 H 0.18 2.29 8.06 -52.49 -0.42 1.86 16 40 H 0.03 0.67 7.56 -51.93 -0.39 0.28 16 41 H 0.04 0.94 7.19 -51.93 -0.37 0.56 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 43 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -38.32 367.76 -6.73 -45.05 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.28 Total: -0.78 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -3.28 Total: -17.69 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 1.71 Total: -38.95 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.74 Total: -9.92 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.32 -6.73 -45.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603260366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.068 kcal (2) G-P(sol) polarization free energy of solvation -38.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds