Wall clock time and date at job start Tue Mar 31 2020 11:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38291 * 119.97277 * 2 1 4 4 C 1.38247 * 120.11102 * 180.02562 * 3 2 1 5 5 C 1.38165 * 120.05317 * 359.67910 * 4 3 2 6 6 C 1.38711 * 119.94770 * 0.57576 * 5 4 3 7 7 O 1.35895 * 120.05609 * 179.72249 * 6 5 4 8 8 C 1.42898 * 117.00130 * 359.72117 * 7 6 5 9 9 C 1.53004 * 109.47203 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47096 * 55.00200 * 9 8 7 11 11 O 1.42906 * 109.46716 * 295.00159 * 9 8 7 12 12 C 1.52998 * 109.47033 * 175.00470 * 9 8 7 13 13 N 1.46505 * 109.46658 * 185.00045 * 12 9 8 14 14 C 1.35310 * 125.86763 * 125.29510 * 13 12 9 15 15 C 1.35348 * 106.17503 * 180.17814 * 14 13 12 16 16 C 1.50700 * 126.75241 * 179.84708 * 15 14 13 17 17 C 1.50702 * 109.46869 * 124.71667 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 N 1.33770 * 106.49624 * 359.59617 * 15 14 13 26 26 N 1.28632 * 108.88455 * 0.25241 * 25 15 14 27 27 C 1.38123 * 119.97223 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46730 * 270.01943 * 1 2 3 29 29 H 1.08992 * 109.46911 * 30.02251 * 1 2 3 30 30 H 1.08996 * 109.47157 * 150.02357 * 1 2 3 31 31 H 1.07999 * 119.94384 * 0.02562 * 3 2 1 32 32 H 1.07995 * 119.96794 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.02479 * 180.29271 * 5 4 3 34 34 H 1.09005 * 109.47079 * 60.00544 * 8 7 6 35 35 H 1.09002 * 109.47458 * 300.00080 * 8 7 6 36 36 H 0.96699 * 114.00201 * 299.99454 * 11 9 8 37 37 H 1.09001 * 109.47517 * 64.99978 * 12 9 8 38 38 H 1.08999 * 109.47139 * 304.99631 * 12 9 8 39 39 H 1.08000 * 126.91429 * 0.03609 * 14 13 12 40 40 H 1.09004 * 109.47210 * 4.71960 * 16 15 14 41 41 H 1.08994 * 109.47551 * 244.71612 * 16 15 14 42 42 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.02831 * 0.02620 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5804 1.2013 -0.0005 5 6 4.2752 0.0071 0.0056 6 6 3.5846 -1.1959 0.0003 7 8 4.2658 -2.3718 0.0006 8 6 5.6927 -2.2949 0.0005 9 6 6.2796 -3.7079 0.0002 10 1 5.8746 -4.2694 -0.8416 11 8 5.9366 -4.3663 1.2213 12 6 7.8023 -3.6276 -0.1255 13 7 8.3542 -4.9794 -0.2458 14 6 9.1612 -5.4209 -1.2382 15 6 9.4266 -6.7185 -0.9592 16 6 10.2819 -7.6583 -1.7693 17 6 11.3605 -8.2387 -0.8914 18 1 11.4204 -7.9558 0.1491 19 6 12.2672 -9.1359 -1.4152 20 7 13.2051 -9.6466 -0.6477 21 14 12.1632 -9.6258 -3.2148 22 1 12.9880 -8.6973 -4.0290 23 1 12.6691 -11.0122 -3.3803 24 1 10.7499 -9.5575 -3.6656 25 7 8.7848 -7.0010 0.1799 26 7 8.1589 -5.9497 0.5770 27 6 2.1971 -1.1965 0.0005 28 1 -0.3633 0.0003 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6566 2.1325 0.0004 32 1 4.1176 2.1382 -0.0010 33 1 5.3552 0.0102 0.0100 34 1 6.0280 -1.7620 0.8903 35 1 6.0279 -1.7626 -0.8897 36 1 6.2654 -3.9209 2.0142 37 1 8.2151 -3.1441 0.7598 38 1 8.0637 -3.0484 -1.0111 39 1 9.5194 -4.8529 -2.0840 40 1 10.7395 -7.1129 -2.5948 41 1 9.6628 -8.4635 -2.1648 42 1 13.8431 -10.2775 -1.0162 43 1 1.6571 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603260366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:54 Heat of formation + Delta-G solvation = 5.836109 kcal Electronic energy + Delta-G solvation = -24772.050718 eV Core-core repulsion = 21011.843727 eV Total energy + Delta-G solvation = -3760.206991 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.03315 -41.21208 -39.31092 -37.98748 -35.83475 -34.88629 -33.41210 -33.14956 -32.16782 -30.80012 -29.81601 -28.03921 -27.40937 -25.10859 -23.87771 -23.47758 -22.59951 -21.91704 -21.57856 -18.95609 -18.86376 -18.44132 -17.88354 -17.26237 -17.07126 -16.88301 -16.38991 -16.24365 -15.84523 -15.54388 -15.18806 -15.11472 -14.84118 -14.47836 -14.23681 -14.16843 -13.99293 -13.80515 -13.44989 -12.97147 -12.95664 -12.86021 -12.49522 -12.42810 -12.33422 -12.27261 -11.91913 -11.86594 -11.76310 -11.61410 -11.43194 -11.29556 -10.75977 -10.70453 -9.83614 -9.74606 -9.15406 -8.23860 -6.29057 0.36093 0.48535 0.78247 1.40643 1.44898 1.46777 1.57222 1.79099 2.15130 2.41443 2.79600 3.10242 3.27619 3.45271 3.56946 3.71488 3.79956 3.90933 3.94404 4.00757 4.16403 4.22249 4.27590 4.29244 4.40173 4.44923 4.45698 4.55512 4.69461 4.79649 4.81056 4.87488 5.00398 5.07189 5.23097 5.34732 5.35394 5.38613 5.49416 5.63577 5.65878 5.83576 5.87879 6.33179 6.44216 6.74382 6.76218 7.32624 7.76456 8.93994 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.037790 B = 0.001889 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.755614 B =14820.992376 C =14869.682914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.056 4.056 3 C -0.168 4.168 4 C -0.080 4.080 5 C -0.221 4.221 6 C 0.116 3.884 7 O -0.329 6.329 8 C 0.035 3.965 9 C 0.105 3.895 10 H 0.092 0.908 11 O -0.561 6.561 12 C 0.082 3.918 13 N -0.286 5.286 14 C -0.051 4.051 15 C -0.013 4.013 16 C 0.066 3.934 17 C -0.518 4.518 18 H 0.017 0.983 19 C 0.001 3.999 20 N -0.955 5.955 21 Si 0.960 3.040 22 H -0.253 1.253 23 H -0.288 1.288 24 H -0.244 1.244 25 N -0.320 5.320 26 N -0.099 5.099 27 C -0.179 4.179 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.388 0.612 37 H 0.128 0.872 38 H 0.163 0.837 39 H 0.236 0.764 40 H 0.062 0.938 41 H 0.031 0.969 42 H 0.267 0.733 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.458 30.490 -3.756 38.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.056 4.056 3 C -0.186 4.186 4 C -0.098 4.098 5 C -0.240 4.240 6 C 0.071 3.929 7 O -0.243 6.243 8 C -0.041 4.041 9 C 0.044 3.956 10 H 0.110 0.890 11 O -0.367 6.367 12 C -0.038 4.038 13 N -0.082 5.082 14 C -0.200 4.200 15 C -0.151 4.151 16 C 0.027 3.973 17 C -0.557 4.557 18 H 0.035 0.965 19 C -0.195 4.195 20 N -0.596 5.596 21 Si 0.782 3.218 22 H -0.178 1.178 23 H -0.214 1.214 24 H -0.167 1.167 25 N -0.187 5.187 26 N -0.078 5.078 27 C -0.198 4.198 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.161 0.839 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.237 0.763 37 H 0.146 0.854 38 H 0.180 0.820 39 H 0.252 0.748 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.395 29.356 -2.827 37.644 hybrid contribution 1.305 -0.080 -0.640 1.456 sum -22.089 29.276 -3.466 36.838 Atomic orbital electron populations 1.20872 0.89309 1.03769 1.03275 1.20032 0.97337 0.92052 0.96168 1.21299 0.94700 0.98086 1.04558 1.21313 0.94392 0.98246 0.95851 1.21514 1.01419 0.91723 1.09329 1.19230 0.92017 0.85054 0.96644 1.86097 1.20649 1.28767 1.88768 1.23528 0.78490 0.97030 1.05032 1.22055 0.91422 0.92792 0.89306 0.89001 1.86776 1.79519 1.54647 1.15801 1.23080 0.93897 0.77269 1.09544 1.47429 1.32424 1.12191 1.16153 1.23872 1.01226 0.95995 0.98920 1.22450 1.01392 0.95860 0.95439 1.17967 0.92016 0.93208 0.94063 1.21148 1.12401 1.25778 0.96362 0.96465 1.26096 0.94236 0.95252 1.03914 1.70093 1.18653 1.32070 1.38787 0.85529 0.80240 0.77738 0.78321 1.17779 1.21384 1.16702 1.75055 1.10875 1.19763 1.12966 1.78248 1.20234 0.91897 1.17370 1.20509 0.91478 0.99186 1.08636 0.90167 0.89816 0.91288 0.83939 0.83260 0.83309 0.88773 0.87850 0.76300 0.85447 0.81981 0.74774 0.92012 0.95114 0.92462 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 10.01 71.24 0.71 -0.34 16 2 C -0.06 -0.78 5.88 -19.88 -0.12 -0.90 16 3 C -0.17 -1.96 9.70 22.28 0.22 -1.74 16 4 C -0.08 -0.87 10.04 22.25 0.22 -0.64 16 5 C -0.22 -2.77 9.04 22.37 0.20 -2.57 16 6 C 0.12 2.03 6.69 22.51 0.15 2.19 16 7 O -0.33 -6.26 10.10 -87.73 -0.89 -7.15 16 8 C 0.03 0.36 4.37 71.98 0.31 0.68 16 9 C 0.10 1.69 3.44 30.60 0.11 1.80 16 10 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 11 O -0.56 -13.01 12.33 -144.34 -1.78 -14.79 16 12 C 0.08 1.09 6.14 86.38 0.53 1.62 16 13 N -0.29 -8.22 3.44 -347.73 -1.20 -9.42 16 14 C -0.05 -1.57 11.49 83.49 0.96 -0.61 16 15 C -0.01 -0.60 6.44 41.60 0.27 -0.33 16 16 C 0.07 3.23 4.62 29.10 0.13 3.36 16 17 C -0.52 -31.61 9.64 25.60 0.25 -31.36 16 18 H 0.02 1.20 7.98 -2.91 -0.02 1.18 16 19 C 0.00 0.06 5.47 84.66 0.46 0.52 16 20 N -0.96 -62.02 13.96 21.45 0.30 -61.72 16 21 Si 0.96 43.96 27.47 68.60 1.88 45.85 16 22 H -0.25 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.24 -10.28 6.54 99.48 0.65 -9.63 16 25 N -0.32 -15.88 12.40 -48.60 -0.60 -16.49 16 26 N -0.10 -3.99 12.09 37.02 0.45 -3.54 16 27 C -0.18 -3.22 9.64 22.37 0.22 -3.01 16 28 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 30 H 0.07 0.62 8.08 -2.39 -0.02 0.60 16 31 H 0.14 0.99 8.06 -2.91 -0.02 0.97 16 32 H 0.15 0.80 8.06 -2.91 -0.02 0.77 16 33 H 0.15 1.04 6.30 -2.91 -0.02 1.02 16 34 H 0.09 0.56 7.65 -2.38 -0.02 0.54 16 35 H 0.10 0.50 7.67 -2.39 -0.02 0.48 16 36 H 0.39 6.00 9.05 -74.06 -0.67 5.33 16 37 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.16 0.62 8.07 -2.39 -0.02 0.60 16 39 H 0.24 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.06 2.58 7.56 -2.38 -0.02 2.56 16 41 H 0.03 1.51 7.19 -2.39 -0.02 1.49 16 42 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 43 H 0.12 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -92.17 367.76 3.09 -89.07 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.30 Total: 9.52 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 4.63 Total: -31.33 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -1.05 Total: -91.17 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -2.67 Total: -21.94 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.85 kcal Total: -92.17 3.09 -89.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603260366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.908 kcal (2) G-P(sol) polarization free energy of solvation -92.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds