Wall clock time and date at job start Tue Mar 31 2020 11:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37677 * 119.96358 * 2 1 4 4 C 1.39741 * 119.92450 * 180.23181 * 3 2 1 5 5 C 1.47585 * 120.07490 * 179.78661 * 4 3 2 6 6 O 1.21585 * 119.99867 * 20.25171 * 5 4 3 7 7 N 1.34779 * 119.99592 * 200.25668 * 5 4 3 8 8 C 1.46500 * 120.00363 * 7.05005 * 7 5 4 9 9 C 1.46507 * 119.99469 * 187.05280 * 7 5 4 10 10 C 1.50699 * 109.46870 * 269.99812 * 9 7 5 11 11 H 1.08007 * 119.99995 * 0.02562 * 10 9 7 12 12 C 1.37878 * 119.99821 * 180.02562 * 10 9 7 13 13 N 1.31513 * 120.00167 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99891 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46986 * 60.00189 * 14 12 10 16 16 H 1.48500 * 109.47363 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47271 * 300.00065 * 14 12 10 18 18 C 1.39774 * 119.85091 * 359.50721 * 4 3 2 19 19 C 1.37647 * 119.92409 * 0.25816 * 18 4 3 20 20 C 1.39113 * 119.96167 * 179.75889 * 2 1 3 21 21 N 1.39439 * 119.92579 * 0.02562 * 20 2 1 22 22 C 1.47059 * 125.40571 * 270.02080 * 21 20 2 23 23 C 1.54103 * 103.85805 * 179.97438 * 22 21 20 24 24 N 1.47058 * 103.86425 * 359.97438 * 23 22 21 25 25 C 1.33941 * 125.41120 * 89.71262 * 21 20 2 26 26 O 1.21584 * 123.04130 * 359.97438 * 25 21 20 27 27 H 1.09003 * 109.47238 * 270.23898 * 1 2 3 28 28 H 1.09000 * 109.47043 * 30.23648 * 1 2 3 29 29 H 1.09001 * 109.47503 * 150.23875 * 1 2 3 30 30 H 1.08004 * 120.04157 * 359.97438 * 3 2 1 31 31 H 1.08995 * 109.46876 * 267.55901 * 8 7 5 32 32 H 1.08999 * 109.46779 * 27.56216 * 8 7 5 33 33 H 1.08994 * 109.46946 * 147.56134 * 8 7 5 34 34 H 1.08998 * 109.46813 * 150.00144 * 9 7 5 35 35 H 1.08998 * 109.47218 * 29.99647 * 9 7 5 36 36 H 0.96999 * 120.00254 * 179.97438 * 13 12 10 37 37 H 1.08002 * 120.04102 * 180.27570 * 18 4 3 38 38 H 1.08004 * 119.96016 * 180.02562 * 19 18 4 39 39 H 1.08995 * 110.54692 * 298.59201 * 22 21 20 40 40 H 1.08995 * 110.54804 * 61.40594 * 22 21 20 41 41 H 1.09009 * 110.54975 * 118.59285 * 23 22 21 42 42 H 1.08995 * 110.55027 * 241.40185 * 23 22 21 43 43 H 0.96997 * 125.40699 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1928 0.0000 4 6 3.5920 1.1918 -0.0049 5 6 4.3325 2.4685 -0.0097 6 8 3.7842 3.4906 0.3550 7 7 5.6164 2.5012 -0.4184 8 6 6.2301 1.3059 -1.0022 9 6 6.3983 3.7323 -0.2787 10 6 6.2446 4.5688 -1.5227 11 1 5.6259 4.2187 -2.3359 12 6 6.8936 5.7811 -1.6228 13 7 7.6473 6.2072 -0.6329 14 14 6.7037 6.8177 -3.1652 15 1 5.2717 7.1605 -3.3579 16 1 7.4971 8.0650 -3.0242 17 1 7.1917 6.0514 -4.3398 18 6 4.2869 -0.0209 0.0006 19 6 3.5932 -1.2098 0.0055 20 6 2.2018 -1.2052 0.0051 21 7 1.5022 -2.4114 0.0096 22 6 1.0739 -3.1434 1.2110 23 6 0.3546 -4.3853 0.6497 24 7 0.4535 -4.2208 -0.8083 25 6 1.1085 -3.0844 -1.0795 26 8 1.3277 -2.6995 -2.2118 27 1 -0.3634 0.0043 1.0277 28 1 -0.3633 0.8879 -0.5175 29 1 -0.3634 -0.8921 -0.5101 30 1 1.6547 2.1281 -0.0004 31 1 6.7246 0.7319 -0.2186 32 1 5.4593 0.6934 -1.4699 33 1 6.9628 1.6032 -1.7523 34 1 7.4494 3.4810 -0.1375 35 1 6.0400 4.2944 0.5837 36 1 8.1042 7.0599 -0.7034 37 1 5.3669 -0.0252 0.0014 38 1 4.1296 -2.1472 0.0102 39 1 1.9372 -3.4379 1.8076 40 1 0.3868 -2.5387 1.8028 41 1 0.8608 -5.2969 0.9674 42 1 -0.6892 -4.3972 0.9631 43 1 0.0977 -4.8359 -1.4687 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604529967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:45 Heat of formation + Delta-G solvation = -17.446613 kcal Electronic energy + Delta-G solvation = -26306.715752 eV Core-core repulsion = 22545.499146 eV Total energy + Delta-G solvation = -3761.216605 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.42531 -41.27638 -39.43318 -37.48457 -36.83922 -35.43523 -34.69838 -33.69105 -31.42352 -29.97255 -29.65457 -28.03260 -27.49031 -25.80803 -24.12479 -23.76480 -22.92562 -21.63363 -20.46268 -18.97105 -18.73054 -18.02954 -17.82371 -17.65458 -17.19491 -16.53420 -16.25563 -16.06219 -15.78929 -15.35848 -15.21700 -14.81800 -14.78784 -14.60893 -14.51829 -14.26647 -13.82718 -13.65945 -13.48210 -13.27625 -13.17469 -13.09209 -12.96200 -12.88979 -12.64303 -12.47142 -12.24296 -11.92952 -11.74827 -11.52508 -10.79642 -10.65633 -10.45762 -10.00219 -9.69667 -9.66236 -9.47500 -8.24271 -6.38576 -0.31695 0.27681 1.35105 1.39343 1.46757 1.48089 1.79281 1.99141 2.22055 2.40735 2.70599 3.01224 3.05158 3.55070 3.58389 3.72376 3.78600 4.10566 4.14067 4.22196 4.34588 4.39414 4.43298 4.56395 4.57507 4.68085 4.70738 4.80733 4.88778 4.92580 4.94956 4.96936 5.08859 5.12417 5.18991 5.31804 5.36937 5.49219 5.54279 5.78986 5.95036 6.03561 6.20987 6.42734 6.63081 6.70237 7.22404 7.37422 7.51096 8.82685 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027042 B = 0.002770 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.182772 B =10107.118478 C =10141.298794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.090 4.090 3 C -0.070 4.070 4 C -0.131 4.131 5 C 0.536 3.464 6 O -0.591 6.591 7 N -0.600 5.600 8 C 0.065 3.935 9 C 0.260 3.740 10 C -0.546 4.546 11 H 0.048 0.952 12 C 0.010 3.990 13 N -0.926 5.926 14 Si 0.966 3.034 15 H -0.280 1.280 16 H -0.274 1.274 17 H -0.261 1.261 18 C -0.098 4.098 19 C -0.108 4.108 20 C 0.178 3.822 21 N -0.590 5.590 22 C 0.084 3.916 23 C 0.097 3.903 24 N -0.730 5.730 25 C 0.692 3.308 26 O -0.635 6.635 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.001 0.999 36 H 0.269 0.731 37 H 0.175 0.825 38 H 0.157 0.843 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.132 -28.128 6.297 32.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.092 4.092 3 C -0.090 4.090 4 C -0.134 4.134 5 C 0.326 3.674 6 O -0.473 6.473 7 N -0.330 5.330 8 C -0.076 4.076 9 C 0.139 3.861 10 C -0.584 4.584 11 H 0.066 0.934 12 C -0.189 4.189 13 N -0.565 5.565 14 Si 0.790 3.210 15 H -0.206 1.206 16 H -0.199 1.199 17 H -0.186 1.186 18 C -0.116 4.116 19 C -0.128 4.128 20 C 0.087 3.913 21 N -0.325 5.325 22 C -0.037 4.037 23 C -0.027 4.027 24 N -0.392 5.392 25 C 0.393 3.607 26 O -0.516 6.516 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.019 0.981 36 H 0.078 0.922 37 H 0.191 0.809 38 H 0.174 0.826 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -14.080 -27.185 6.011 31.199 hybrid contribution -0.001 1.074 -0.991 1.461 sum -14.081 -26.110 5.020 30.087 Atomic orbital electron populations 1.20693 0.88930 1.02711 1.03558 1.20206 0.97869 0.91343 0.99732 1.21005 0.92526 0.98213 0.97268 1.20014 0.94501 0.92847 1.06045 1.18867 0.81926 0.88775 0.77855 1.90709 1.68480 1.36972 1.51186 1.48055 1.11373 1.14341 1.59251 1.22572 0.99374 0.86626 0.99051 1.18837 0.90166 0.81291 0.95774 1.21648 1.29269 1.04975 1.02554 0.93395 1.25812 0.94544 0.98474 1.00050 1.70022 1.31470 1.21738 1.33305 0.85503 0.78003 0.78104 0.79418 1.20587 1.19882 1.18598 1.22329 1.02897 0.89912 0.96489 1.21487 0.92716 0.99026 0.99536 1.17113 0.90144 0.83215 1.00877 1.44092 1.58973 1.21539 1.07872 1.22917 1.01215 0.92380 0.87163 1.22691 1.03453 0.98441 0.78086 1.45060 1.60469 1.23362 1.10261 1.16166 0.78994 0.81762 0.83748 1.90971 1.64442 1.73028 1.23110 0.88680 0.91349 0.92032 0.85907 0.89070 0.89022 0.91195 0.94807 0.98108 0.92249 0.80852 0.82554 0.87722 0.88279 0.86924 0.87176 0.71846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.12 9.76 71.24 0.70 -1.43 16 2 C -0.09 -2.38 5.89 -19.79 -0.12 -2.49 16 3 C -0.07 -2.31 9.22 22.50 0.21 -2.10 16 4 C -0.13 -4.61 5.56 -20.08 -0.11 -4.72 16 5 C 0.54 24.79 7.50 86.71 0.65 25.44 16 6 O -0.59 -33.15 16.18 -3.99 -0.06 -33.22 16 7 N -0.60 -27.13 2.86 -854.87 -2.44 -29.57 16 8 C 0.07 2.07 8.64 127.77 1.10 3.17 16 9 C 0.26 14.48 5.12 85.63 0.44 14.91 16 10 C -0.55 -32.78 9.39 25.60 0.24 -32.54 16 11 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 12 C 0.01 0.62 5.46 84.66 0.46 1.08 16 13 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 14 Si 0.97 46.42 29.54 68.60 2.03 48.45 16 15 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 16 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 18 C -0.10 -2.59 7.61 22.50 0.17 -2.42 16 19 C -0.11 -2.44 9.95 22.35 0.22 -2.21 16 20 C 0.18 4.22 5.40 38.36 0.21 4.43 16 21 N -0.59 -10.76 2.05 -646.74 -1.32 -12.09 16 22 C 0.08 0.59 7.61 86.65 0.66 1.25 16 23 C 0.10 0.25 8.06 86.65 0.70 0.95 16 24 N -0.73 -8.31 6.37 -477.34 -3.04 -11.35 16 25 C 0.69 15.40 7.96 179.57 1.43 16.83 16 26 O -0.63 -21.63 17.65 -3.98 -0.07 -21.70 16 27 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 1.46 8.08 -2.39 -0.02 1.44 16 29 H 0.06 1.29 6.95 -2.39 -0.02 1.28 16 30 H 0.12 4.31 7.78 -2.91 -0.02 4.29 16 31 H 0.09 2.19 6.91 -2.39 -0.02 2.18 16 32 H 0.09 2.58 5.38 -2.39 -0.01 2.57 16 33 H 0.07 2.30 8.09 -2.39 -0.02 2.28 16 34 H 0.03 1.86 8.07 -2.39 -0.02 1.84 16 35 H 0.00 0.05 7.53 -2.39 -0.02 0.03 16 36 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.17 3.87 4.01 -2.91 -0.01 3.86 16 38 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 39 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.11 -0.24 8.14 -2.38 -0.02 -0.26 16 42 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.44 3.65 8.96 -92.71 -0.83 2.82 16 Total: -1.00 -89.79 359.04 2.55 -87.24 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.22 Total: 8.63 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 6.96 Total: 20.15 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -6.52 Total: -109.55 kcal Atomic # 8 Polarization: -54.78 SS G_CDS: -0.13 Total: -54.92 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -89.79 2.55 -87.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604529967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.793 kcal (2) G-P(sol) polarization free energy of solvation -89.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds