Wall clock time and date at job start Tue Mar 31 2020 11:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42908 * 113.99572 * 2 1 4 4 C 1.52998 * 109.47059 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47582 * 64.99614 * 4 3 2 6 6 C 1.46497 * 120.00130 * 264.79395 * 5 4 3 7 7 C 1.50701 * 109.46734 * 263.33794 * 6 5 4 8 8 H 1.07999 * 120.00349 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99988 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00147 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00152 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46873 * 89.99798 * 11 9 7 13 13 H 1.48490 * 109.47452 * 210.00055 * 11 9 7 14 14 H 1.48503 * 109.46939 * 330.00323 * 11 9 7 15 15 C 1.34774 * 119.99885 * 84.78591 * 5 4 3 16 16 O 1.21593 * 120.00157 * 3.77887 * 15 5 4 17 17 C 1.47592 * 120.00118 * 183.77782 * 15 5 4 18 18 C 1.36570 * 125.91948 * 173.64803 * 17 15 5 19 19 N 1.36196 * 107.09270 * 179.73739 * 18 17 15 20 20 C 1.36687 * 132.29352 * 180.23989 * 19 18 17 21 21 C 1.34845 * 120.63797 * 179.97438 * 20 19 18 22 22 C 1.40573 * 120.34427 * 0.04212 * 21 20 19 23 23 C 1.50698 * 120.13039 * 179.97438 * 22 21 20 24 24 C 1.35892 * 119.73035 * 359.97438 * 22 21 20 25 25 C 1.37268 * 107.34293 * 0.26236 * 19 18 17 26 26 N 1.32235 * 108.37717 * 359.97438 * 25 19 18 27 27 H 1.08996 * 109.47052 * 300.00176 * 1 2 3 28 28 H 1.08997 * 109.46828 * 60.00995 * 1 2 3 29 29 H 1.09002 * 109.46344 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47167 * 59.99641 * 3 2 1 31 31 H 1.09002 * 109.46812 * 299.99809 * 3 2 1 32 32 H 1.09004 * 109.46865 * 304.99856 * 4 3 2 33 33 H 1.08999 * 109.47214 * 185.00291 * 4 3 2 34 34 H 1.09002 * 109.47610 * 23.33660 * 6 5 4 35 35 H 1.08994 * 109.47512 * 143.34155 * 6 5 4 36 36 H 0.97000 * 120.00208 * 179.97438 * 10 9 7 37 37 H 1.07998 * 126.45397 * 0.02562 * 18 17 15 38 38 H 1.08005 * 119.68098 * 0.02562 * 20 19 18 39 39 H 1.08004 * 119.82550 * 179.97438 * 21 20 19 40 40 H 1.09003 * 109.47448 * 269.97412 * 23 22 21 41 41 H 1.08994 * 109.47584 * 29.97842 * 23 22 21 42 42 H 1.09006 * 109.46699 * 149.98078 * 23 22 21 43 43 H 1.07995 * 120.32328 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1849 -0.0006 5 7 3.9758 0.5646 -1.2526 6 6 4.2153 -0.8795 -1.3101 7 6 5.6849 -1.1529 -1.1186 8 1 6.3718 -0.3329 -0.9696 9 6 6.1526 -2.4498 -1.1338 10 7 7.4352 -2.6884 -0.9673 11 14 4.9646 -3.8682 -1.3909 12 1 4.8455 -4.1572 -2.8427 13 1 5.4719 -5.0728 -0.6863 14 1 3.6316 -3.5020 -0.8482 15 6 4.1603 1.3225 -2.3517 16 8 4.0282 2.5295 -2.2871 17 6 4.5229 0.6875 -3.6337 18 6 4.6190 1.3181 -4.8413 19 7 4.9815 0.3770 -5.7566 20 6 5.2221 0.4455 -7.1004 21 6 5.5752 -0.6566 -7.7924 22 6 5.7002 -1.8953 -7.1396 23 6 6.0945 -3.1241 -7.9178 24 6 5.4641 -1.9801 -5.8040 25 6 5.0953 -0.8183 -5.0914 26 7 4.8131 -0.6141 -3.8158 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3632 -1.0277 0.0005 30 1 1.6885 1.8465 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5684 0.8410 33 1 3.9784 2.1767 0.0890 34 1 3.6481 -1.3736 -0.5212 35 1 3.8979 -1.2622 -2.2800 36 1 7.7641 -3.6008 -0.9776 37 1 4.4454 2.3666 -5.0333 38 1 5.1293 1.3918 -7.6127 39 1 5.7618 -0.5875 -8.8540 40 1 5.1990 -3.6196 -8.2928 41 1 6.7281 -2.8354 -8.7563 42 1 6.6416 -3.8062 -7.2669 43 1 5.5578 -2.9267 -5.2928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609140515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:43 Heat of formation + Delta-G solvation = 5.898263 kcal Electronic energy + Delta-G solvation = -27147.052510 eV Core-core repulsion = 23386.848214 eV Total energy + Delta-G solvation = -3760.204296 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.76987 -40.75163 -38.82371 -38.35774 -36.72072 -35.12406 -34.46596 -32.08886 -31.34259 -30.66827 -29.32911 -27.96733 -27.15453 -25.44539 -24.34283 -23.94673 -22.82387 -22.59613 -20.09331 -19.03679 -18.84625 -17.86859 -17.80938 -17.21120 -17.01336 -17.00168 -16.52115 -16.14188 -15.92833 -15.70742 -15.42600 -15.30824 -14.90279 -14.73305 -14.29910 -14.21532 -13.82790 -13.53564 -13.35943 -13.19387 -12.92354 -12.80495 -12.67019 -12.61888 -12.46515 -12.34676 -12.02454 -11.95883 -11.65474 -11.55849 -11.20784 -10.77430 -10.63138 -10.40909 -9.83295 -9.39139 -8.75858 -8.17893 -6.15532 -0.25740 0.25718 1.15519 1.37284 1.40557 1.50997 1.58261 2.25677 2.37757 2.43956 2.65990 2.90383 3.19023 3.21162 3.47607 3.79893 3.82826 4.07707 4.11628 4.17587 4.22381 4.35477 4.37871 4.48161 4.51609 4.54738 4.61820 4.74795 4.81269 4.81587 4.85420 4.86736 4.92518 5.06659 5.15485 5.21986 5.41701 5.50973 5.61728 5.63915 5.81094 6.13185 6.23165 6.29587 6.58536 6.76496 6.86320 7.26398 7.45722 9.00141 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010854 B = 0.005576 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.141107 B = 5019.901549 C = 6399.807847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.058 3.942 4 C 0.112 3.888 5 N -0.575 5.575 6 C 0.223 3.777 7 C -0.492 4.492 8 H 0.016 0.984 9 C 0.026 3.974 10 N -0.954 5.954 11 Si 0.936 3.064 12 H -0.264 1.264 13 H -0.285 1.285 14 H -0.254 1.254 15 C 0.592 3.408 16 O -0.584 6.584 17 C -0.024 4.024 18 C -0.020 4.020 19 N -0.368 5.368 20 C 0.049 3.951 21 C -0.129 4.129 22 C -0.054 4.054 23 C -0.110 4.110 24 C -0.121 4.121 25 C 0.199 3.801 26 N -0.461 5.461 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.028 0.972 35 H 0.066 0.934 36 H 0.262 0.738 37 H 0.220 0.780 38 H 0.208 0.792 39 H 0.200 0.800 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.446 3.886 -15.507 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C -0.019 4.019 4 C -0.011 4.011 5 N -0.303 5.303 6 C 0.102 3.898 7 C -0.531 4.531 8 H 0.034 0.966 9 C -0.170 4.170 10 N -0.596 5.596 11 Si 0.761 3.239 12 H -0.189 1.189 13 H -0.211 1.211 14 H -0.178 1.178 15 C 0.380 3.620 16 O -0.467 6.467 17 C -0.156 4.156 18 C -0.156 4.156 19 N -0.040 5.040 20 C -0.070 4.070 21 C -0.149 4.149 22 C -0.060 4.060 23 C -0.166 4.166 24 C -0.141 4.141 25 C -0.047 4.047 26 N -0.181 5.181 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.236 0.764 38 H 0.224 0.776 39 H 0.217 0.783 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.081 0.919 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.322 3.652 -14.768 18.384 hybrid contribution 0.012 0.010 0.123 0.124 sum -10.310 3.662 -14.645 18.280 Atomic orbital electron populations 1.22892 0.79754 1.03459 1.00765 1.87965 1.21396 1.28431 1.95539 1.22915 0.92857 0.84758 1.01358 1.21648 0.93450 0.99711 0.86277 1.47776 1.63045 1.09991 1.09461 1.19874 0.94601 0.76484 0.98890 1.21219 0.92384 0.92273 1.47184 0.96591 1.25441 0.96236 1.01003 0.94327 1.70062 1.15217 1.20848 1.53452 0.85886 0.80204 0.78638 0.79221 1.18899 1.21137 1.17797 1.17229 0.76379 0.85327 0.83045 1.90633 1.56270 1.13699 1.86059 1.20660 1.09066 0.91316 0.94602 1.22708 1.09555 0.96413 0.86935 1.43005 1.43132 1.09032 1.08799 1.22533 1.01152 1.03780 0.79576 1.21288 1.01229 0.89576 1.02774 1.20205 0.95902 0.98046 0.91876 1.20874 1.02855 0.92986 0.99877 1.20264 1.04159 0.95035 0.94641 1.21593 1.06056 0.88481 0.88572 1.71345 1.18152 1.15904 1.12702 0.92148 0.94003 0.89113 0.89287 0.93829 0.89722 0.88721 0.95424 0.91663 0.92899 0.76384 0.77559 0.78291 0.89009 0.88169 0.91865 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -14.53 10.31 -148.98 -1.54 -16.06 16 3 C 0.06 1.90 6.25 71.98 0.45 2.35 16 4 C 0.11 4.41 5.74 86.38 0.50 4.90 16 5 N -0.58 -27.49 2.43 -829.87 -2.02 -29.51 16 6 C 0.22 11.82 3.72 85.63 0.32 12.14 16 7 C -0.49 -30.18 8.89 25.60 0.23 -29.95 16 8 H 0.02 1.11 8.06 -2.91 -0.02 1.08 16 9 C 0.03 1.61 5.47 84.66 0.46 2.07 16 10 N -0.95 -62.15 13.96 21.45 0.30 -61.85 16 11 Si 0.94 47.19 27.47 68.60 1.88 49.07 16 12 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 14 H -0.25 -12.27 6.54 99.48 0.65 -11.62 16 15 C 0.59 28.20 7.57 86.71 0.66 28.85 16 16 O -0.58 -27.43 16.52 -4.01 -0.07 -27.50 16 17 C -0.02 -1.08 6.62 40.80 0.27 -0.81 16 18 C -0.02 -0.71 11.47 83.63 0.96 0.25 16 19 N -0.37 -11.69 2.93 -351.25 -1.03 -12.72 16 20 C 0.05 0.96 10.93 83.16 0.91 1.87 16 21 C -0.13 -2.08 9.67 22.06 0.21 -1.86 16 22 C -0.05 -1.21 5.88 -19.84 -0.12 -1.33 16 23 C -0.11 -1.61 10.02 71.24 0.71 -0.90 16 24 C -0.12 -4.08 9.75 22.45 0.22 -3.86 16 25 C 0.20 7.98 7.79 134.20 1.05 9.03 16 26 N -0.46 -22.34 7.05 -183.49 -1.29 -23.63 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 3.37 8.03 -2.39 -0.02 3.35 16 33 H 0.09 3.56 7.53 -2.39 -0.02 3.55 16 34 H 0.03 1.47 6.83 -2.39 -0.02 1.46 16 35 H 0.07 3.56 4.76 -2.39 -0.01 3.54 16 36 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 37 H 0.22 5.98 8.06 -2.91 -0.02 5.96 16 38 H 0.21 2.02 8.06 -2.91 -0.02 1.99 16 39 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.10 0.91 8.09 -2.39 -0.02 0.89 16 42 H 0.06 1.09 8.08 -2.38 -0.02 1.07 16 43 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -86.91 362.99 5.27 -81.64 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.96 Total: 15.89 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 8.07 Total: 24.67 kcal Atomic # 7 Polarization: -123.67 SS G_CDS: -4.04 Total: -127.71 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -1.60 Total: -43.56 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.88 Total: 49.07 kcal Total: -86.91 5.27 -81.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609140515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.537 kcal (2) G-P(sol) polarization free energy of solvation -86.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds