Wall clock time and date at job start Tue Mar 31 2020 11:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38138 * 119.57178 * 2 1 4 4 C 1.38791 * 119.31480 * 180.02562 * 3 2 1 5 5 C 1.38401 * 118.49681 * 0.24542 * 4 3 2 6 6 C 1.39037 * 119.09533 * 359.52946 * 5 4 3 7 7 N 1.39254 * 119.69434 * 180.22432 * 6 5 4 8 8 C 1.34780 * 119.99753 * 174.60521 * 7 6 5 9 9 O 1.21366 * 120.00119 * 5.03754 * 8 7 6 10 10 C 1.49364 * 120.00050 * 185.03948 * 8 7 6 11 11 O 1.21362 * 120.00077 * 353.63012 * 10 8 7 12 12 N 1.34781 * 120.00035 * 173.63172 * 10 8 7 13 13 C 1.46922 * 120.63092 * 351.03694 * 12 10 8 14 14 C 1.52765 * 109.00766 * 233.58705 * 13 12 10 15 15 C 1.53049 * 109.37890 * 305.58663 * 14 13 12 16 16 C 1.50701 * 109.44554 * 181.25498 * 15 14 13 17 17 H 1.08001 * 119.99792 * 239.93507 * 16 15 14 18 18 C 1.37877 * 120.00167 * 59.94088 * 16 15 14 19 19 N 1.31517 * 119.99682 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00130 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47588 * 89.99669 * 20 18 16 22 22 H 1.48501 * 109.47193 * 209.99948 * 20 18 16 23 23 H 1.48500 * 109.47058 * 329.99471 * 20 18 16 24 24 C 1.53036 * 109.54008 * 61.23914 * 15 14 13 25 25 C 1.46925 * 120.62795 * 171.31484 * 12 10 8 26 26 N 1.31885 * 119.57593 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.46657 * 90.00473 * 1 2 3 28 28 H 1.09002 * 109.46755 * 209.99731 * 1 2 3 29 29 H 1.09000 * 109.47266 * 330.00037 * 1 2 3 30 30 H 1.08006 * 120.34013 * 359.97098 * 3 2 1 31 31 H 1.08003 * 120.75494 * 179.97438 * 4 3 2 32 32 H 1.08000 * 120.45368 * 179.74910 * 5 4 3 33 33 H 0.96998 * 120.00155 * 354.60843 * 7 6 5 34 34 H 1.09004 * 109.58343 * 353.41500 * 13 12 10 35 35 H 1.08999 * 109.58698 * 113.84149 * 13 12 10 36 36 H 1.09001 * 109.56256 * 185.55502 * 14 13 12 37 37 H 1.08996 * 109.36054 * 65.49406 * 14 13 12 38 38 H 1.09002 * 109.45861 * 301.21648 * 15 14 13 39 39 H 0.97008 * 120.00002 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.49876 * 178.67950 * 24 15 14 41 41 H 1.09005 * 109.52227 * 58.60107 * 24 15 14 42 42 H 1.08996 * 109.58722 * 246.15363 * 25 12 10 43 43 H 1.08998 * 109.59221 * 6.44155 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2014 0.0000 4 6 3.5767 1.1952 -0.0005 5 6 4.2316 -0.0241 -0.0063 6 6 3.4812 -1.1945 -0.0013 7 7 4.1273 -2.4281 -0.0022 8 6 3.4109 -3.5641 0.1123 9 8 2.1982 -3.5181 0.1242 10 6 4.1096 -4.8795 0.2246 11 8 5.3150 -4.9392 0.0970 12 7 3.4013 -6.0001 0.4677 13 6 1.9765 -5.9240 0.8179 14 6 1.7431 -6.6860 2.1212 15 6 2.2805 -8.1119 1.9790 16 6 2.0233 -8.8744 3.2532 17 1 2.8505 -9.2856 3.8127 18 6 0.7321 -9.0471 3.7047 19 7 -0.2752 -8.5459 3.0235 20 14 0.4133 -9.9928 5.2836 21 1 0.4257 -9.0540 6.4341 22 1 -0.9114 -10.6591 5.2027 23 1 1.4721 -11.0173 5.4693 24 6 3.7857 -8.0669 1.7067 25 6 4.0409 -7.3207 0.3933 26 7 2.1580 -1.1470 -0.0005 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6473 2.1360 -0.0005 31 1 4.1332 2.1209 -0.0010 32 1 5.3108 -0.0658 -0.0109 33 1 5.0928 -2.4699 -0.0853 34 1 1.6878 -4.8811 0.9493 35 1 1.3804 -6.3730 0.0235 36 1 0.6754 -6.7195 2.3382 37 1 2.2644 -6.1801 2.9339 38 1 1.7762 -8.6090 1.1503 39 1 -1.1837 -8.6677 3.3409 40 1 4.1720 -9.0832 1.6288 41 1 4.2883 -7.5483 2.5232 42 1 3.6166 -7.8860 -0.4364 43 1 5.1135 -7.1993 0.2421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618502054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:44 Heat of formation + Delta-G solvation = -8.765003 kcal Electronic energy + Delta-G solvation = -26426.243843 eV Core-core repulsion = 22665.403700 eV Total energy + Delta-G solvation = -3760.840143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.22573 -40.10284 -38.38684 -37.05492 -35.39216 -33.48102 -32.99720 -31.43685 -31.23595 -30.09841 -27.84921 -26.68569 -25.12014 -23.35619 -22.64121 -22.33561 -21.82500 -20.21682 -18.99766 -17.81422 -17.34932 -16.62347 -16.36025 -16.06541 -15.97266 -15.83064 -14.87675 -14.77718 -14.52477 -14.13010 -13.91193 -13.76491 -13.19772 -13.10492 -12.90466 -12.84459 -12.57890 -12.38995 -12.32952 -12.16540 -11.75182 -11.39302 -11.04667 -10.93013 -10.79938 -10.60085 -10.36775 -10.09346 -9.91899 -9.83420 -9.56438 -9.18557 -9.12501 -8.60915 -8.43356 -8.33419 -8.09945 -6.00221 -4.06802 0.78163 1.09678 1.71747 2.27640 3.29222 3.30244 3.37054 3.39937 3.49171 3.72482 4.14989 4.42773 4.49194 4.51920 4.78417 4.86692 4.99020 5.29420 5.34050 5.41486 5.50349 5.61351 5.71835 5.80728 5.84906 5.91825 5.96757 6.05305 6.07652 6.23265 6.41174 6.46312 6.59862 6.69717 6.75417 6.87651 7.00598 7.14717 7.26873 7.64359 7.66902 7.78033 7.93917 8.02854 8.07915 8.18891 8.42120 8.96351 9.58093 11.05206 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017206 B = 0.003203 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.906870 B = 8740.396071 C = 9873.542772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.162 3.838 3 C -0.207 4.207 4 C -0.045 4.045 5 C -0.213 4.213 6 C 0.367 3.633 7 N -0.641 5.641 8 C 0.500 3.500 9 O -0.433 6.433 10 C 0.503 3.497 11 O -0.543 6.543 12 N -0.559 5.559 13 C 0.066 3.934 14 C -0.123 4.123 15 C 0.046 3.954 16 C -0.513 4.513 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.889 5.889 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.122 4.122 25 C 0.107 3.893 26 N -0.477 5.477 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.428 0.572 34 H 0.121 0.879 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.036 0.964 38 H 0.028 0.972 39 H 0.261 0.739 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.092 19.044 -7.944 21.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.024 3.976 3 C -0.228 4.228 4 C -0.071 4.071 5 C -0.236 4.236 6 C 0.136 3.864 7 N -0.289 5.289 8 C 0.281 3.719 9 O -0.300 6.300 10 C 0.284 3.716 11 O -0.423 6.423 12 N -0.290 5.290 13 C -0.054 4.054 14 C -0.161 4.161 15 C 0.028 3.972 16 C -0.551 4.551 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.160 4.160 25 C -0.014 4.014 26 N -0.193 5.193 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.266 0.734 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.054 0.946 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.151 18.101 -7.976 20.440 hybrid contribution 0.785 0.170 0.879 1.191 sum 5.936 18.271 -7.097 20.481 Atomic orbital electron populations 1.20754 0.88466 1.03808 1.03261 1.21230 0.97099 0.87254 0.92057 1.21879 0.94897 0.99246 1.06821 1.21325 0.94300 0.97478 0.93988 1.21451 1.01030 0.91644 1.09473 1.18405 0.89119 0.84887 0.93975 1.43319 1.11949 1.03048 1.70580 1.20657 0.87834 0.85302 0.78060 1.90672 1.12811 1.85233 1.41270 1.19721 0.86982 0.85018 0.79861 1.90703 1.13344 1.86304 1.51977 1.48222 1.12713 1.05206 1.62882 1.23018 0.77466 1.05475 0.99447 1.21962 1.05115 0.96514 0.92555 1.18681 0.88642 0.92744 0.97169 1.21183 0.92211 1.33792 1.07949 0.92724 1.24967 0.96294 0.95685 0.97048 1.69845 0.98891 1.45331 1.38771 0.86614 0.77530 0.80128 0.83833 1.20758 1.21249 1.19992 1.22013 1.01145 0.98550 0.94342 1.21914 0.98061 0.81584 0.99865 1.67477 1.06865 1.29403 1.15535 0.90244 0.89824 0.90650 0.84769 0.84438 0.84489 0.73355 0.86237 0.91768 0.87512 0.94552 0.95362 0.92945 0.91811 0.92810 0.91364 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.17 36.01 0.37 -0.62 16 2 C 0.16 1.89 6.78 -82.60 -0.56 1.33 16 3 C -0.21 -1.83 9.73 -39.41 -0.38 -2.22 16 4 C -0.04 -0.36 10.17 -39.32 -0.40 -0.76 16 5 C -0.21 -2.01 9.94 -39.23 -0.39 -2.40 16 6 C 0.37 4.79 7.42 -154.81 -1.15 3.65 16 7 N -0.64 -8.48 5.38 -11.86 -0.06 -8.55 16 8 C 0.50 8.24 7.70 -11.62 -0.09 8.15 16 9 O -0.43 -8.04 11.44 5.48 0.06 -7.97 16 10 C 0.50 8.90 7.73 -11.62 -0.09 8.81 16 11 O -0.54 -9.91 15.93 5.49 0.09 -9.83 16 12 N -0.56 -10.50 2.98 -173.57 -0.52 -11.02 16 13 C 0.07 1.33 5.95 -3.93 -0.02 1.31 16 14 C -0.12 -2.87 5.14 -26.83 -0.14 -3.01 16 15 C 0.05 1.12 2.07 -91.73 -0.19 0.93 16 16 C -0.51 -13.85 8.56 -34.44 -0.29 -14.15 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 19 N -0.89 -24.92 11.30 55.43 0.63 -24.29 16 20 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 25 C 0.11 1.94 6.45 -3.71 -0.02 1.92 16 26 N -0.48 -7.05 7.80 -8.62 -0.07 -7.11 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 31 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 32 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.43 4.54 8.18 -40.82 -0.33 4.21 16 34 H 0.12 2.41 4.32 -54.75 -0.24 2.17 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.11 2.78 6.03 -51.93 -0.31 2.47 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -31.69 353.05 -9.03 -40.72 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.86 Total: 4.74 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -3.60 Total: 1.86 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.02 Total: -50.97 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.15 Total: -17.80 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.69 -9.03 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618502054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.958 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds