Wall clock time and date at job start Tue Mar 31 2020 11:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38138 * 119.57178 * 2 1 4 4 C 1.38791 * 119.31480 * 180.02562 * 3 2 1 5 5 C 1.38401 * 118.49681 * 0.24542 * 4 3 2 6 6 C 1.39037 * 119.09533 * 359.52946 * 5 4 3 7 7 N 1.39254 * 119.69434 * 180.22432 * 6 5 4 8 8 C 1.34780 * 119.99753 * 174.60521 * 7 6 5 9 9 O 1.21366 * 120.00119 * 5.03754 * 8 7 6 10 10 C 1.49364 * 120.00050 * 185.03948 * 8 7 6 11 11 O 1.21362 * 120.00077 * 353.63012 * 10 8 7 12 12 N 1.34781 * 120.00035 * 173.63172 * 10 8 7 13 13 C 1.46922 * 120.63092 * 351.03694 * 12 10 8 14 14 C 1.52765 * 109.00766 * 233.58705 * 13 12 10 15 15 C 1.53049 * 109.37890 * 305.58663 * 14 13 12 16 16 C 1.50701 * 109.44554 * 181.25498 * 15 14 13 17 17 H 1.08001 * 119.99792 * 239.93507 * 16 15 14 18 18 C 1.37877 * 120.00167 * 59.94088 * 16 15 14 19 19 N 1.31517 * 119.99682 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00130 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47588 * 89.99669 * 20 18 16 22 22 H 1.48501 * 109.47193 * 209.99948 * 20 18 16 23 23 H 1.48500 * 109.47058 * 329.99471 * 20 18 16 24 24 C 1.53036 * 109.54008 * 61.23914 * 15 14 13 25 25 C 1.46925 * 120.62795 * 171.31484 * 12 10 8 26 26 N 1.31885 * 119.57593 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.46657 * 90.00473 * 1 2 3 28 28 H 1.09002 * 109.46755 * 209.99731 * 1 2 3 29 29 H 1.09000 * 109.47266 * 330.00037 * 1 2 3 30 30 H 1.08006 * 120.34013 * 359.97098 * 3 2 1 31 31 H 1.08003 * 120.75494 * 179.97438 * 4 3 2 32 32 H 1.08000 * 120.45368 * 179.74910 * 5 4 3 33 33 H 0.96998 * 120.00155 * 354.60843 * 7 6 5 34 34 H 1.09004 * 109.58343 * 353.41500 * 13 12 10 35 35 H 1.08999 * 109.58698 * 113.84149 * 13 12 10 36 36 H 1.09001 * 109.56256 * 185.55502 * 14 13 12 37 37 H 1.08996 * 109.36054 * 65.49406 * 14 13 12 38 38 H 1.09002 * 109.45861 * 301.21648 * 15 14 13 39 39 H 0.97008 * 120.00002 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.49876 * 178.67950 * 24 15 14 41 41 H 1.09005 * 109.52227 * 58.60107 * 24 15 14 42 42 H 1.08996 * 109.58722 * 246.15363 * 25 12 10 43 43 H 1.08998 * 109.59221 * 6.44155 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2014 0.0000 4 6 3.5767 1.1952 -0.0005 5 6 4.2316 -0.0241 -0.0063 6 6 3.4812 -1.1945 -0.0013 7 7 4.1273 -2.4281 -0.0022 8 6 3.4109 -3.5641 0.1123 9 8 2.1982 -3.5181 0.1242 10 6 4.1096 -4.8795 0.2246 11 8 5.3150 -4.9392 0.0970 12 7 3.4013 -6.0001 0.4677 13 6 1.9765 -5.9240 0.8179 14 6 1.7431 -6.6860 2.1212 15 6 2.2805 -8.1119 1.9790 16 6 2.0233 -8.8744 3.2532 17 1 2.8505 -9.2856 3.8127 18 6 0.7321 -9.0471 3.7047 19 7 -0.2752 -8.5459 3.0235 20 14 0.4133 -9.9928 5.2836 21 1 0.4257 -9.0540 6.4341 22 1 -0.9114 -10.6591 5.2027 23 1 1.4721 -11.0173 5.4693 24 6 3.7857 -8.0669 1.7067 25 6 4.0409 -7.3207 0.3933 26 7 2.1580 -1.1470 -0.0005 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6473 2.1360 -0.0005 31 1 4.1332 2.1209 -0.0010 32 1 5.3108 -0.0658 -0.0109 33 1 5.0928 -2.4699 -0.0853 34 1 1.6878 -4.8811 0.9493 35 1 1.3804 -6.3730 0.0235 36 1 0.6754 -6.7195 2.3382 37 1 2.2644 -6.1801 2.9339 38 1 1.7762 -8.6090 1.1503 39 1 -1.1837 -8.6677 3.3409 40 1 4.1720 -9.0832 1.6288 41 1 4.2883 -7.5483 2.5232 42 1 3.6166 -7.8860 -0.4364 43 1 5.1135 -7.1993 0.2421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618502054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:43 Heat of formation + Delta-G solvation = -28.200709 kcal Electronic energy + Delta-G solvation = -26427.086638 eV Core-core repulsion = 22665.403700 eV Total energy + Delta-G solvation = -3761.682938 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.37863 -41.20212 -39.67451 -38.64798 -36.52883 -35.28419 -33.75021 -33.05763 -32.32531 -31.81348 -28.79757 -28.26637 -26.53441 -24.69531 -24.15452 -23.40042 -23.10042 -21.61233 -20.53392 -19.01374 -18.61087 -18.40160 -17.67831 -17.28747 -17.11138 -16.71323 -16.52775 -16.13427 -15.86924 -15.43994 -15.02527 -14.92704 -14.70906 -14.66566 -14.43459 -14.00168 -13.86116 -13.57445 -13.40936 -13.20133 -13.08406 -12.84768 -12.80557 -12.53404 -12.39701 -12.16880 -12.01485 -11.76362 -11.52341 -11.11359 -11.03436 -10.72105 -10.61428 -10.41707 -9.91582 -9.73005 -9.27895 -8.08325 -6.22419 -0.17788 0.33393 0.59370 1.08446 1.40869 1.42154 1.51707 2.00428 2.26745 2.43343 2.88106 2.99832 3.18169 3.49077 3.88970 4.01680 4.08661 4.20784 4.24958 4.27539 4.35046 4.45794 4.53663 4.62784 4.72240 4.77215 4.79774 4.83233 4.92074 5.02478 5.12607 5.16592 5.18908 5.26618 5.28684 5.34930 5.43738 5.61327 5.76378 5.88543 5.95121 6.07369 6.17456 6.36585 6.50946 6.77960 6.88019 7.19011 7.45492 8.95353 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017206 B = 0.003203 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.906870 B = 8740.396071 C = 9873.542772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.130 3.870 3 C -0.193 4.193 4 C -0.042 4.042 5 C -0.201 4.201 6 C 0.328 3.672 7 N -0.626 5.626 8 C 0.501 3.499 9 O -0.462 6.462 10 C 0.507 3.493 11 O -0.545 6.545 12 N -0.568 5.568 13 C 0.084 3.916 14 C -0.112 4.112 15 C 0.043 3.957 16 C -0.534 4.534 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.914 5.914 20 Si 0.952 3.048 21 H -0.279 1.279 22 H -0.283 1.283 23 H -0.269 1.269 24 C -0.113 4.113 25 C 0.112 3.888 26 N -0.523 5.523 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.168 0.832 31 H 0.180 0.820 32 H 0.167 0.833 33 H 0.438 0.562 34 H 0.123 0.877 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.022 0.978 38 H 0.005 0.995 39 H 0.261 0.739 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.683 21.394 -8.129 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.008 4.008 3 C -0.214 4.214 4 C -0.067 4.067 5 C -0.223 4.223 6 C 0.099 3.901 7 N -0.276 5.276 8 C 0.282 3.718 9 O -0.332 6.332 10 C 0.289 3.711 11 O -0.425 6.425 12 N -0.299 5.299 13 C -0.037 4.037 14 C -0.151 4.151 15 C 0.025 3.975 16 C -0.572 4.572 17 H 0.070 0.930 18 C -0.185 4.185 19 N -0.553 5.553 20 Si 0.778 3.222 21 H -0.205 1.205 22 H -0.209 1.209 23 H -0.193 1.193 24 C -0.151 4.151 25 C -0.009 4.009 26 N -0.240 5.240 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.185 0.815 31 H 0.197 0.803 32 H 0.185 0.815 33 H 0.280 0.720 34 H 0.140 0.860 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.023 0.977 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.099 0.901 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.787 20.489 -8.171 23.079 hybrid contribution 0.325 -0.413 0.914 1.055 sum 7.112 20.076 -7.256 22.501 Atomic orbital electron populations 1.20787 0.87749 1.03801 1.03655 1.21651 0.97984 0.87705 0.93415 1.22280 0.95649 0.99325 1.04101 1.21872 0.94202 0.98450 0.92221 1.21830 1.02442 0.90751 1.07299 1.18734 0.89320 0.85393 0.96690 1.43140 1.12282 1.02569 1.69567 1.20405 0.87525 0.85629 0.78223 1.90650 1.13804 1.85499 1.43293 1.19945 0.86875 0.85259 0.79027 1.90690 1.13395 1.86490 1.51883 1.48180 1.12078 1.05977 1.63682 1.22694 0.78571 1.04947 0.97472 1.21725 1.02864 0.96584 0.93919 1.18647 0.91108 0.92463 0.95304 1.21551 0.92360 1.34245 1.09049 0.93018 1.25714 0.96202 0.96599 1.00015 1.69982 0.99099 1.46136 1.40120 0.85648 0.77472 0.78927 0.80142 1.20475 1.20878 1.19315 1.21855 0.98148 0.99603 0.95499 1.21898 0.99031 0.81229 0.98761 1.67316 1.08273 1.31619 1.16756 0.89663 0.92596 0.87809 0.81480 0.80264 0.81519 0.72047 0.86015 0.92048 0.90500 0.95876 0.97709 0.92986 0.90737 0.93636 0.90093 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 10.17 71.24 0.72 -1.16 16 2 C 0.13 2.93 6.78 42.53 0.29 3.22 16 3 C -0.19 -2.80 9.73 22.38 0.22 -2.58 16 4 C -0.04 -0.50 10.17 22.44 0.23 -0.27 16 5 C -0.20 -3.21 9.94 22.50 0.22 -2.98 16 6 C 0.33 8.29 7.42 132.95 0.99 9.27 16 7 N -0.63 -16.23 5.38 -309.79 -1.67 -17.90 16 8 C 0.50 16.66 7.70 87.24 0.67 17.34 16 9 O -0.46 -17.79 11.44 -3.30 -0.04 -17.83 16 10 C 0.51 17.78 7.73 87.24 0.67 18.46 16 11 O -0.54 -19.20 15.93 -3.28 -0.05 -19.25 16 12 N -0.57 -21.38 2.98 -821.41 -2.45 -23.83 16 13 C 0.08 3.50 5.95 86.22 0.51 4.01 16 14 C -0.11 -5.47 5.14 30.53 0.16 -5.31 16 15 C 0.04 2.16 2.07 -11.51 -0.02 2.14 16 16 C -0.53 -29.44 8.56 25.60 0.22 -29.22 16 17 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 18 C 0.01 0.75 5.30 84.65 0.45 1.20 16 19 N -0.91 -52.67 11.30 21.45 0.24 -52.43 16 20 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 C -0.11 -4.63 5.30 30.67 0.16 -4.47 16 25 C 0.11 3.97 6.45 86.36 0.56 4.53 16 26 N -0.52 -15.56 7.80 -181.18 -1.41 -16.97 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.10 1.22 8.08 -2.39 -0.02 1.20 16 30 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 31 H 0.18 0.67 8.06 -2.91 -0.02 0.64 16 32 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.44 8.75 8.18 -92.71 -0.76 8.00 16 34 H 0.12 5.13 4.32 -47.13 -0.20 4.93 16 35 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.08 4.22 6.03 -2.39 -0.01 4.20 16 37 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 40 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.10 3.19 7.00 -2.39 -0.02 3.17 16 Total: -1.00 -71.06 353.05 2.79 -68.27 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.09 Total: 19.88 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.05 Total: 14.16 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -5.28 Total: -111.13 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -0.09 Total: -37.09 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -71.06 2.79 -68.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618502054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.073 kcal (2) G-P(sol) polarization free energy of solvation -71.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds