Wall clock time and date at job start Tue Mar 31 2020 11:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31218 * 119.86332 * 2 1 4 4 C 1.33980 * 120.81857 * 180.30040 * 3 2 1 5 5 C 1.38861 * 132.58042 * 179.65639 * 4 3 2 6 6 C 1.38660 * 107.64822 * 180.02562 * 5 4 3 7 7 N 1.31417 * 108.99246 * 359.97438 * 6 5 4 8 8 N 1.37168 * 120.53659 * 359.67562 * 4 3 2 9 9 C 1.36527 * 119.79026 * 0.02562 * 8 4 3 10 10 C 1.50700 * 120.43895 * 180.02562 * 9 8 4 11 11 C 1.35527 * 119.12171 * 359.97438 * 9 8 4 12 12 C 1.50696 * 120.27532 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47581 * 89.99576 * 12 11 9 14 14 C 1.50696 * 109.47581 * 180.02562 * 13 12 11 15 15 O 1.20833 * 119.99595 * 0.02562 * 14 13 12 16 16 O 1.34224 * 120.00302 * 180.02562 * 14 13 12 17 17 C 1.45206 * 117.00077 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.47078 * 330.00341 * 17 16 14 19 19 C 1.53000 * 109.47102 * 90.00098 * 17 16 14 20 20 C 1.50704 * 109.47006 * 210.00139 * 17 16 14 21 21 H 1.07998 * 119.99806 * 0.02562 * 20 17 16 22 22 C 1.37876 * 119.99865 * 180.02562 * 20 17 16 23 23 N 1.31518 * 119.99732 * 359.97438 * 22 20 17 24 24 Si 1.86793 * 119.99950 * 180.02562 * 22 20 17 25 25 H 1.48507 * 109.47327 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47422 * 119.99942 * 24 22 20 27 27 H 1.48500 * 109.47345 * 239.99890 * 24 22 20 28 28 H 1.09002 * 109.46898 * 270.30161 * 1 2 3 29 29 H 1.09001 * 109.47556 * 30.30004 * 1 2 3 30 30 H 1.08994 * 109.47391 * 150.30385 * 1 2 3 31 31 H 1.08001 * 126.17311 * 0.05429 * 5 4 3 32 32 H 1.07998 * 125.50417 * 179.97438 * 6 5 4 33 33 H 1.08993 * 109.46968 * 269.97552 * 10 9 8 34 34 H 1.08997 * 109.47114 * 29.97823 * 10 9 8 35 35 H 1.09003 * 109.46657 * 149.97212 * 10 9 8 36 36 H 1.09005 * 109.47017 * 329.99628 * 12 11 9 37 37 H 1.09000 * 109.47368 * 210.00602 * 12 11 9 38 38 H 1.09009 * 109.46302 * 60.00405 * 13 12 11 39 39 H 1.08995 * 109.47159 * 300.00733 * 13 12 11 40 40 H 1.09000 * 109.47214 * 300.00384 * 19 17 16 41 41 H 1.09008 * 109.47142 * 59.99549 * 19 17 16 42 42 H 1.08992 * 109.47123 * 179.97438 * 19 17 16 43 43 H 0.97002 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1603 1.1379 0.0000 4 6 3.4999 1.1603 -0.0060 5 6 4.4223 2.1983 -0.0136 6 6 5.6892 1.6348 -0.0180 7 7 5.5751 0.3256 -0.0128 8 7 4.2165 -0.0094 -0.0057 9 6 3.5605 -1.2067 0.0004 10 6 4.3331 -2.5005 0.0015 11 6 2.2053 -1.2162 0.0065 12 6 1.4547 -2.5230 0.0138 13 6 1.2072 -2.9610 1.4587 14 6 0.4572 -4.2681 1.4660 15 8 0.1524 -4.7955 0.4225 16 8 0.1279 -4.8464 2.6317 17 6 -0.5936 -6.1046 2.5627 18 1 -1.2000 -6.1265 1.6572 19 6 0.4045 -7.2640 2.5361 20 6 -1.4869 -6.2383 3.7690 21 1 -1.5104 -5.4556 4.5129 22 6 -2.2741 -7.3596 3.9230 23 7 -2.2458 -8.3124 3.0168 24 14 -3.3819 -7.5250 5.4179 25 1 -3.2313 -6.3257 6.2808 26 1 -4.7948 -7.6434 4.9764 27 1 -2.9999 -8.7375 6.1854 28 1 -0.3633 0.0054 1.0277 29 1 -0.3634 0.8873 -0.5185 30 1 -0.3634 -0.8926 -0.5091 31 1 4.1940 3.2539 -0.0154 32 1 6.6196 2.1833 -0.0245 33 1 4.5152 -2.8158 -1.0259 34 1 5.2855 -2.3545 0.5110 35 1 3.7573 -3.2671 0.5202 36 1 2.0433 -3.2829 -0.5004 37 1 0.4998 -2.3964 -0.4963 38 1 0.6186 -2.2010 1.9728 39 1 2.1622 -3.0875 1.9687 40 1 1.0506 -7.1673 1.6636 41 1 1.0111 -7.2420 3.4416 42 1 -0.1371 -8.2084 2.4848 43 1 -2.8000 -9.1012 3.1250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:01 Heat of formation + Delta-G solvation = 12.503330 kcal Electronic energy + Delta-G solvation = -25951.437227 eV Core-core repulsion = 22191.519349 eV Total energy + Delta-G solvation = -3759.917878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.60175 -39.78126 -38.87631 -36.11333 -35.51680 -34.01268 -33.30743 -31.32455 -30.25979 -29.57257 -28.48796 -27.99268 -25.42354 -25.13611 -22.61514 -22.24033 -21.26749 -20.97766 -19.57986 -18.81525 -17.30334 -16.75323 -16.50682 -16.40254 -15.75464 -15.46851 -15.18809 -14.63621 -14.48840 -14.03207 -13.89721 -13.75734 -13.62364 -13.37024 -13.09295 -12.85610 -12.75094 -12.47035 -12.31007 -12.04866 -11.93410 -11.78058 -11.35113 -11.27398 -11.13761 -11.08748 -10.94645 -10.88258 -10.41189 -10.32887 -10.01392 -9.77659 -9.60099 -9.42178 -8.95425 -8.54486 -8.04582 -6.23416 -4.30378 0.29931 0.63470 1.81467 2.38273 2.89344 3.11778 3.20298 3.27334 3.31725 3.50619 3.59550 3.80009 3.99720 4.27940 4.46888 4.61908 4.83484 4.85829 4.96688 5.01020 5.08078 5.09948 5.11686 5.25745 5.29674 5.34988 5.45937 5.51120 5.61533 5.68419 5.76517 5.83338 5.87666 6.10028 6.17244 6.34101 6.57801 6.82219 6.85174 7.10685 7.21153 7.44844 7.54988 7.67016 7.87898 8.08628 8.56086 8.82633 9.35484 10.84002 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025857 B = 0.002539 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.617964 B =11024.108053 C =11411.608356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.223 3.777 3 N -0.475 5.475 4 C 0.265 3.735 5 C -0.275 4.275 6 C 0.088 3.912 7 N -0.318 5.318 8 N -0.311 5.311 9 C 0.199 3.801 10 C -0.125 4.125 11 C -0.187 4.187 12 C -0.056 4.056 13 C -0.115 4.115 14 C 0.452 3.548 15 O -0.521 6.521 16 O -0.356 6.356 17 C 0.215 3.785 18 H 0.047 0.953 19 C -0.155 4.155 20 C -0.521 4.521 21 H 0.069 0.931 22 C 0.062 3.938 23 N -0.889 5.889 24 Si 0.911 3.089 25 H -0.270 1.270 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.160 0.840 32 H 0.196 0.804 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.016 0.984 41 H 0.036 0.964 42 H 0.099 0.901 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.411 16.523 -6.749 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.059 3.941 3 N -0.188 5.188 4 C 0.038 3.962 5 C -0.306 4.306 6 C -0.090 4.090 7 N -0.142 5.142 8 N -0.083 5.083 9 C 0.084 3.916 10 C -0.181 4.181 11 C -0.193 4.193 12 C -0.094 4.094 13 C -0.153 4.153 14 C 0.295 3.705 15 O -0.412 6.412 16 O -0.272 6.272 17 C 0.163 3.837 18 H 0.065 0.935 19 C -0.213 4.213 20 C -0.559 4.559 21 H 0.087 0.913 22 C -0.140 4.140 23 N -0.527 5.527 24 Si 0.738 3.262 25 H -0.195 1.195 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.177 0.823 32 H 0.213 0.787 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.035 0.965 41 H 0.055 0.945 42 H 0.118 0.882 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.713 15.999 -7.055 21.046 hybrid contribution -0.500 -0.108 0.696 0.864 sum 11.212 15.891 -6.359 20.462 Atomic orbital electron populations 1.20982 0.86808 1.04856 1.04654 1.21853 0.97859 0.86765 0.87581 1.68094 1.03911 1.28496 1.18306 1.20778 0.88302 0.86879 1.00285 1.20920 0.89594 0.98662 1.21428 1.23809 0.98952 0.90982 0.95267 1.77832 0.89355 1.15639 1.31419 1.47145 1.07437 1.05797 1.47895 1.20526 0.91256 0.86366 0.93491 1.21089 1.00937 0.91201 1.04903 1.20094 0.91216 0.98108 1.09889 1.20319 1.01338 0.91355 0.96436 1.21331 1.01801 0.94175 0.97965 1.23200 0.77603 0.86451 0.83254 1.90613 1.52087 1.64791 1.33707 1.86489 1.67950 1.40522 1.32281 1.20654 0.89094 0.74764 0.99222 0.93482 1.22164 0.98518 1.03022 0.97567 1.21065 1.23017 1.05199 1.06642 0.91267 1.24893 0.96838 0.95136 0.97146 1.69906 1.39801 1.08678 1.34284 0.86224 0.79874 0.78267 0.81810 1.19466 1.20719 1.20709 0.88680 0.89498 0.88885 0.82269 0.78717 0.88652 0.89226 0.88199 0.89057 0.88312 0.87869 0.88307 0.96520 0.94455 0.88222 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.80 36.00 0.35 -0.60 16 2 C 0.22 2.45 6.83 -82.10 -0.56 1.89 16 3 N -0.48 -6.13 10.40 -8.46 -0.09 -6.21 16 4 C 0.27 3.51 7.92 -155.51 -1.23 2.28 16 5 C -0.28 -3.05 10.91 -39.19 -0.43 -3.47 16 6 C 0.09 0.87 11.94 -17.57 -0.21 0.66 16 7 N -0.32 -3.97 12.52 30.47 0.38 -3.58 16 8 N -0.31 -4.02 3.90 -8.49 -0.03 -4.06 16 9 C 0.20 2.24 6.86 -81.47 -0.56 1.69 16 10 C -0.12 -1.11 9.28 36.01 0.33 -0.77 16 11 C -0.19 -1.99 5.12 -104.84 -0.54 -2.52 16 12 C -0.06 -0.59 3.56 -27.89 -0.10 -0.69 16 13 C -0.11 -1.40 5.66 -27.89 -0.16 -1.56 16 14 C 0.45 8.32 7.93 36.00 0.29 8.60 16 15 O -0.52 -10.90 15.20 -18.76 -0.29 -11.18 16 16 O -0.36 -7.95 9.86 -39.24 -0.39 -8.33 16 17 C 0.21 5.55 2.56 -27.88 -0.07 5.48 16 18 H 0.05 1.34 7.16 -51.93 -0.37 0.97 16 19 C -0.15 -3.79 9.33 37.16 0.35 -3.45 16 20 C -0.52 -14.24 8.90 -34.44 -0.31 -14.54 16 21 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 22 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 23 N -0.89 -24.70 11.32 55.43 0.63 -24.07 16 24 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.68 6.00 -51.93 -0.31 0.37 16 31 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.81 8.13 -51.93 -0.42 0.39 16 35 H 0.10 0.81 5.86 -51.93 -0.30 0.51 16 36 H 0.09 0.95 6.66 -51.93 -0.35 0.60 16 37 H 0.10 1.01 5.96 -51.93 -0.31 0.70 16 38 H 0.10 1.12 8.14 -51.92 -0.42 0.69 16 39 H 0.10 1.07 7.40 -51.93 -0.38 0.68 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.04 0.87 8.14 -51.92 -0.42 0.44 16 42 H 0.10 2.62 6.07 -51.93 -0.32 2.31 16 43 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 360.28 15.07 5.43 5.43 Total: -1.00 -33.10 360.28 -8.00 -41.10 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.69 Total: 0.74 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.94 Total: -5.43 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.89 Total: -37.93 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.67 Total: -19.52 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.10 -8.00 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.604 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds