Wall clock time and date at job start Tue Mar 31 2020 11:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31218 * 119.86332 * 2 1 4 4 C 1.33980 * 120.81857 * 180.30040 * 3 2 1 5 5 C 1.38861 * 132.58042 * 179.65639 * 4 3 2 6 6 C 1.38660 * 107.64822 * 180.02562 * 5 4 3 7 7 N 1.31417 * 108.99246 * 359.97438 * 6 5 4 8 8 N 1.37168 * 120.53659 * 359.67562 * 4 3 2 9 9 C 1.36527 * 119.79026 * 0.02562 * 8 4 3 10 10 C 1.50700 * 120.43895 * 180.02562 * 9 8 4 11 11 C 1.35527 * 119.12171 * 359.97438 * 9 8 4 12 12 C 1.50696 * 120.27532 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47581 * 89.99576 * 12 11 9 14 14 C 1.50696 * 109.47581 * 180.02562 * 13 12 11 15 15 O 1.20833 * 119.99595 * 0.02562 * 14 13 12 16 16 O 1.34224 * 120.00302 * 180.02562 * 14 13 12 17 17 C 1.45206 * 117.00077 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.47078 * 330.00341 * 17 16 14 19 19 C 1.53000 * 109.47102 * 90.00098 * 17 16 14 20 20 C 1.50704 * 109.47006 * 210.00139 * 17 16 14 21 21 H 1.07998 * 119.99806 * 0.02562 * 20 17 16 22 22 C 1.37876 * 119.99865 * 180.02562 * 20 17 16 23 23 N 1.31518 * 119.99732 * 359.97438 * 22 20 17 24 24 Si 1.86793 * 119.99950 * 180.02562 * 22 20 17 25 25 H 1.48507 * 109.47327 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47422 * 119.99942 * 24 22 20 27 27 H 1.48500 * 109.47345 * 239.99890 * 24 22 20 28 28 H 1.09002 * 109.46898 * 270.30161 * 1 2 3 29 29 H 1.09001 * 109.47556 * 30.30004 * 1 2 3 30 30 H 1.08994 * 109.47391 * 150.30385 * 1 2 3 31 31 H 1.08001 * 126.17311 * 0.05429 * 5 4 3 32 32 H 1.07998 * 125.50417 * 179.97438 * 6 5 4 33 33 H 1.08993 * 109.46968 * 269.97552 * 10 9 8 34 34 H 1.08997 * 109.47114 * 29.97823 * 10 9 8 35 35 H 1.09003 * 109.46657 * 149.97212 * 10 9 8 36 36 H 1.09005 * 109.47017 * 329.99628 * 12 11 9 37 37 H 1.09000 * 109.47368 * 210.00602 * 12 11 9 38 38 H 1.09009 * 109.46302 * 60.00405 * 13 12 11 39 39 H 1.08995 * 109.47159 * 300.00733 * 13 12 11 40 40 H 1.09000 * 109.47214 * 300.00384 * 19 17 16 41 41 H 1.09008 * 109.47142 * 59.99549 * 19 17 16 42 42 H 1.08992 * 109.47123 * 179.97438 * 19 17 16 43 43 H 0.97002 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1603 1.1379 0.0000 4 6 3.4999 1.1603 -0.0060 5 6 4.4223 2.1983 -0.0136 6 6 5.6892 1.6348 -0.0180 7 7 5.5751 0.3256 -0.0128 8 7 4.2165 -0.0094 -0.0057 9 6 3.5605 -1.2067 0.0004 10 6 4.3331 -2.5005 0.0015 11 6 2.2053 -1.2162 0.0065 12 6 1.4547 -2.5230 0.0138 13 6 1.2072 -2.9610 1.4587 14 6 0.4572 -4.2681 1.4660 15 8 0.1524 -4.7955 0.4225 16 8 0.1279 -4.8464 2.6317 17 6 -0.5936 -6.1046 2.5627 18 1 -1.2000 -6.1265 1.6572 19 6 0.4045 -7.2640 2.5361 20 6 -1.4869 -6.2383 3.7690 21 1 -1.5104 -5.4556 4.5129 22 6 -2.2741 -7.3596 3.9230 23 7 -2.2458 -8.3124 3.0168 24 14 -3.3819 -7.5250 5.4179 25 1 -3.2313 -6.3257 6.2808 26 1 -4.7948 -7.6434 4.9764 27 1 -2.9999 -8.7375 6.1854 28 1 -0.3633 0.0054 1.0277 29 1 -0.3634 0.8873 -0.5185 30 1 -0.3634 -0.8926 -0.5091 31 1 4.1940 3.2539 -0.0154 32 1 6.6196 2.1833 -0.0245 33 1 4.5152 -2.8158 -1.0259 34 1 5.2855 -2.3545 0.5110 35 1 3.7573 -3.2671 0.5202 36 1 2.0433 -3.2829 -0.5004 37 1 0.4998 -2.3964 -0.4963 38 1 0.6186 -2.2010 1.9728 39 1 2.1622 -3.0875 1.9687 40 1 1.0506 -7.1673 1.6636 41 1 1.0111 -7.2420 3.4416 42 1 -0.1371 -8.2084 2.4848 43 1 -2.8000 -9.1012 3.1250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:00 Heat of formation + Delta-G solvation = -5.569999 kcal Electronic energy + Delta-G solvation = -25952.220945 eV Core-core repulsion = 22191.519349 eV Total energy + Delta-G solvation = -3760.701597 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.43157 -41.29270 -39.79869 -37.68114 -36.49180 -35.30071 -34.92573 -32.30099 -31.59816 -30.91069 -29.38456 -28.74676 -27.43644 -26.20728 -23.80560 -23.12566 -22.63757 -21.80682 -21.14124 -19.64913 -18.85900 -18.49973 -17.59066 -17.34039 -17.10382 -17.06847 -16.26536 -16.04886 -15.49864 -14.95577 -14.89954 -14.77231 -14.52802 -14.37161 -14.15567 -14.10054 -13.84126 -13.70712 -13.46847 -13.19314 -13.07107 -12.97164 -12.91494 -12.78343 -12.71103 -12.36584 -12.18094 -12.13049 -11.99951 -11.76748 -11.53465 -11.30806 -10.94790 -10.85525 -10.57967 -10.29828 -8.89185 -8.27320 -6.43362 -0.51899 -0.21781 1.00251 1.40565 1.43358 1.44301 1.57281 1.60094 2.05041 2.30100 2.44644 2.75482 3.02954 3.03919 3.21563 3.57765 3.77458 3.86319 4.05790 4.14979 4.20714 4.29268 4.30800 4.43865 4.48533 4.53830 4.60542 4.63808 4.71800 4.78711 4.81731 4.88165 4.88586 4.98462 5.01447 5.06776 5.22087 5.33105 5.40369 5.52149 5.58045 5.67528 5.97025 6.15152 6.39135 6.60480 6.62745 7.02510 7.29244 8.80236 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025857 B = 0.002539 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.617964 B =11024.108053 C =11411.608356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.220 3.780 3 N -0.498 5.498 4 C 0.237 3.763 5 C -0.283 4.283 6 C 0.096 3.904 7 N -0.344 5.344 8 N -0.325 5.325 9 C 0.191 3.809 10 C -0.122 4.122 11 C -0.186 4.186 12 C -0.047 4.047 13 C -0.101 4.101 14 C 0.448 3.552 15 O -0.548 6.548 16 O -0.367 6.367 17 C 0.218 3.782 18 H 0.011 0.989 19 C -0.143 4.143 20 C -0.546 4.546 21 H 0.067 0.933 22 C 0.016 3.984 23 N -0.916 5.916 24 Si 0.980 3.020 25 H -0.263 1.263 26 H -0.276 1.276 27 H -0.274 1.274 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.176 0.824 32 H 0.236 0.764 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.027 0.973 41 H 0.043 0.957 42 H 0.078 0.922 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.871 17.552 -6.048 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.057 3.943 3 N -0.211 5.211 4 C 0.009 3.991 5 C -0.313 4.313 6 C -0.081 4.081 7 N -0.168 5.168 8 N -0.096 5.096 9 C 0.076 3.924 10 C -0.178 4.178 11 C -0.192 4.192 12 C -0.085 4.085 13 C -0.139 4.139 14 C 0.293 3.707 15 O -0.440 6.440 16 O -0.283 6.283 17 C 0.164 3.836 18 H 0.029 0.971 19 C -0.201 4.201 20 C -0.584 4.584 21 H 0.085 0.915 22 C -0.184 4.184 23 N -0.555 5.555 24 Si 0.803 3.197 25 H -0.187 1.187 26 H -0.202 1.202 27 H -0.199 1.199 28 H 0.124 0.876 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.194 0.806 32 H 0.252 0.748 33 H 0.124 0.876 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.186 17.041 -6.367 21.896 hybrid contribution -0.583 -0.353 0.393 0.787 sum 11.603 16.688 -5.974 21.185 Atomic orbital electron populations 1.21090 0.85080 1.05603 1.05505 1.22283 0.98992 0.86519 0.86511 1.68135 1.04002 1.29319 1.19674 1.21250 0.88887 0.87753 1.01179 1.21322 0.89773 0.99285 1.20942 1.24491 1.00124 0.90254 0.93261 1.77778 0.89478 1.17087 1.32432 1.47313 1.07582 1.06118 1.48625 1.20951 0.91783 0.86841 0.92869 1.21148 1.00660 0.90337 1.05688 1.20000 0.91010 0.97816 1.10387 1.20233 1.01666 0.91354 0.95266 1.21431 1.01964 0.90752 0.99714 1.24344 0.76927 0.87650 0.81734 1.90602 1.53163 1.65893 1.34310 1.86477 1.68029 1.39364 1.34434 1.20306 0.89323 0.76768 0.97171 0.97093 1.21987 0.98155 1.01585 0.98377 1.21345 1.24176 1.05654 1.07206 0.91515 1.25792 0.97989 0.94567 1.00014 1.70020 1.40393 1.09115 1.35925 0.85179 0.77806 0.78530 0.78167 1.18747 1.20164 1.19907 0.87606 0.88917 0.87981 0.80643 0.74779 0.87558 0.89461 0.87327 0.88783 0.87926 0.85860 0.86254 0.95372 0.93739 0.90306 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 9.80 71.23 0.70 -1.02 16 2 C 0.22 4.59 6.83 43.14 0.29 4.88 16 3 N -0.50 -12.50 10.40 -180.67 -1.88 -14.38 16 4 C 0.24 6.10 7.92 133.13 1.05 7.16 16 5 C -0.28 -5.91 10.91 22.52 0.25 -5.66 16 6 C 0.10 1.74 11.94 84.86 1.01 2.75 16 7 N -0.34 -8.17 12.52 -57.51 -0.72 -8.89 16 8 N -0.32 -8.13 3.90 -180.76 -0.71 -8.83 16 9 C 0.19 4.09 6.86 41.20 0.28 4.37 16 10 C -0.12 -2.00 9.28 71.24 0.66 -1.34 16 11 C -0.19 -3.70 5.12 -20.00 -0.10 -3.80 16 12 C -0.05 -0.91 3.56 29.85 0.11 -0.80 16 13 C -0.10 -2.28 5.66 29.85 0.17 -2.11 16 14 C 0.45 16.19 7.93 71.23 0.56 16.76 16 15 O -0.55 -22.92 15.20 21.94 0.33 -22.58 16 16 O -0.37 -16.29 9.86 -51.35 -0.51 -16.80 16 17 C 0.22 11.41 2.56 29.85 0.08 11.49 16 18 H 0.01 0.66 7.16 -2.39 -0.02 0.64 16 19 C -0.14 -7.08 9.33 71.98 0.67 -6.40 16 20 C -0.55 -30.05 8.90 25.60 0.23 -29.82 16 21 H 0.07 3.61 7.81 -2.91 -0.02 3.58 16 22 C 0.02 0.86 5.30 84.65 0.45 1.31 16 23 N -0.92 -51.41 11.32 21.45 0.24 -51.17 16 24 Si 0.98 41.89 29.54 68.60 2.03 43.91 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 26 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.10 1.32 6.00 -2.39 -0.01 1.30 16 31 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 32 H 0.24 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.48 8.13 -2.39 -0.02 1.47 16 35 H 0.11 1.56 5.86 -2.39 -0.01 1.55 16 36 H 0.09 1.80 6.66 -2.38 -0.02 1.78 16 37 H 0.10 1.93 5.96 -2.39 -0.01 1.92 16 38 H 0.12 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.12 2.27 7.40 -2.39 -0.02 2.25 16 40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.08 4.23 6.07 -2.39 -0.01 4.21 16 43 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -72.29 360.28 6.24 -66.05 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 1.04 Total: 14.93 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 6.41 Total: -2.24 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -3.06 Total: -83.27 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.17 Total: -39.38 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -72.29 6.24 -66.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.475 kcal (2) G-P(sol) polarization free energy of solvation -72.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds