Wall clock time and date at job start Tue Mar 31 2020 11:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39761 * 125.83713 * 2 1 4 4 C 1.36114 * 107.82609 * 180.02562 * 3 2 1 5 5 N 1.39473 * 126.21308 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00252 * 359.97438 * 5 4 3 7 7 O 1.21296 * 119.99648 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00196 * 180.02562 * 6 5 4 9 9 H 1.08995 * 109.47142 * 59.99407 * 8 6 5 10 10 C 1.53005 * 109.46670 * 299.99770 * 8 6 5 11 11 C 1.50700 * 109.47121 * 180.02562 * 8 6 5 12 12 C 1.34510 * 125.78779 * 239.99709 * 11 8 6 13 13 C 1.41388 * 106.84077 * 180.02562 * 12 11 8 14 14 C 1.34515 * 106.83897 * 359.97438 * 13 12 11 15 15 C 1.50701 * 125.78600 * 180.02562 * 14 13 12 16 16 O 1.34305 * 125.78937 * 59.68970 * 11 8 6 17 17 N 1.35256 * 107.56876 * 0.02562 * 4 3 2 18 18 C 1.46504 * 126.04807 * 180.02562 * 17 4 3 19 19 C 1.50693 * 109.47102 * 270.00017 * 18 17 4 20 20 H 1.08004 * 120.00247 * 0.02562 * 19 18 17 21 21 C 1.37883 * 120.00172 * 179.97438 * 19 18 17 22 22 N 1.31503 * 120.00055 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99609 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47104 * 89.99650 * 23 21 19 25 25 H 1.48502 * 109.47228 * 209.99878 * 23 21 19 26 26 H 1.48501 * 109.47292 * 329.99809 * 23 21 19 27 27 N 1.30847 * 125.83772 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46966 * 270.01936 * 1 2 3 29 29 H 1.08994 * 109.47444 * 30.02388 * 1 2 3 30 30 H 1.09004 * 109.47212 * 150.02613 * 1 2 3 31 31 H 1.07997 * 126.08300 * 0.02654 * 3 2 1 32 32 H 0.97001 * 120.00169 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47093 * 60.00506 * 10 8 6 34 34 H 1.09005 * 109.46674 * 179.97438 * 10 8 6 35 35 H 1.08995 * 109.47042 * 299.99699 * 10 8 6 36 36 H 1.08001 * 126.58269 * 359.96785 * 12 11 8 37 37 H 1.08001 * 126.57889 * 180.02562 * 13 12 11 38 38 H 1.09001 * 109.46776 * 90.00300 * 15 14 13 39 39 H 1.09000 * 109.47150 * 210.00087 * 15 14 13 40 40 H 1.08998 * 109.47045 * 330.00367 * 15 14 13 41 41 H 1.08999 * 109.46543 * 30.00157 * 18 17 4 42 42 H 1.08997 * 109.47063 * 149.99681 * 18 17 4 43 43 H 0.97008 * 120.00104 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6197 0.7122 -0.0006 5 7 4.7512 1.5275 -0.0003 6 6 4.6157 2.8684 0.0002 7 8 3.5095 3.3661 -0.0002 8 6 5.8383 3.7494 -0.0001 9 1 6.4332 3.5452 -0.8903 10 6 6.6742 3.4620 1.2488 11 6 5.4153 5.1958 0.0011 12 6 5.7175 6.1046 -0.9434 13 6 5.1225 7.3235 -0.5444 14 6 4.4918 7.0865 0.6199 15 6 3.7142 8.0975 1.4226 16 8 4.6677 5.7947 0.9425 17 7 3.6092 -0.6404 -0.0015 18 6 4.7871 -1.5116 -0.0018 19 6 5.1912 -1.8093 -1.4227 20 1 4.6274 -1.3911 -2.2435 21 6 6.2814 -2.6149 -1.6750 22 7 6.6344 -2.8743 -2.9149 23 14 7.2570 -3.3377 -0.2554 24 1 6.6832 -4.6551 0.1194 25 1 8.6731 -3.5135 -0.6666 26 1 7.1902 -2.4192 0.9095 27 7 2.2731 -1.0607 -0.0005 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 1.9901 2.1597 0.0004 32 1 5.6358 1.1296 -0.0011 33 1 6.9802 2.4159 1.2484 34 1 7.5588 4.0990 1.2484 35 1 6.0793 3.6663 2.1390 36 1 6.3031 5.9358 -1.8350 37 1 5.1654 8.2642 -1.0733 38 1 2.6722 8.0917 1.1025 39 1 3.7706 7.8423 2.4808 40 1 4.1372 9.0896 1.2650 41 1 5.6082 -1.0124 0.5126 42 1 4.5498 -2.4435 0.5113 43 1 7.4017 -3.4408 -3.0925 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742574017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:55 Heat of formation + Delta-G solvation = 53.628814 kcal Electronic energy + Delta-G solvation = -26310.543552 eV Core-core repulsion = 22552.409009 eV Total energy + Delta-G solvation = -3758.134544 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.67604 -40.94633 -39.32076 -34.85481 -34.44432 -33.76841 -33.19805 -32.18120 -31.26195 -29.51758 -28.27366 -26.65982 -26.32791 -24.43770 -22.56999 -21.86701 -21.51175 -20.19754 -19.77296 -19.18422 -17.29668 -17.17365 -16.63645 -16.34225 -16.01254 -15.45607 -14.97856 -14.65102 -14.46207 -14.03935 -13.87175 -13.54688 -13.30254 -13.17238 -13.08466 -12.83366 -12.78469 -12.66661 -12.54498 -12.29348 -12.21930 -11.91155 -11.82181 -11.76753 -11.68888 -11.15151 -10.86067 -10.50718 -10.26150 -9.98185 -9.87770 -9.77899 -9.53019 -8.88289 -8.34858 -7.97364 -7.50480 -6.35513 -4.40142 1.62319 2.17427 2.47483 2.75079 2.85400 3.02861 3.06959 3.12684 3.16730 3.53813 3.66939 4.11886 4.28574 4.52363 4.71340 4.76373 4.90936 4.93713 5.01488 5.21717 5.26402 5.28846 5.39146 5.49316 5.50501 5.59235 5.75229 5.81872 5.92311 5.99480 6.02857 6.07438 6.12437 6.20652 6.30545 6.34015 6.47309 6.62598 6.72717 7.14703 7.17811 7.42500 7.51869 7.74268 8.14317 8.27632 8.55468 8.71015 9.18963 10.76688 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013127 B = 0.003794 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.506677 B = 7377.588154 C = 8869.443332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.292 4.292 4 C 0.306 3.694 5 N -0.638 5.638 6 C 0.522 3.478 7 O -0.499 6.499 8 C -0.023 4.023 9 H 0.133 0.867 10 C -0.148 4.148 11 C 0.012 3.988 12 C -0.200 4.200 13 C -0.215 4.215 14 C -0.012 4.012 15 C -0.073 4.073 16 O -0.157 6.157 17 N -0.344 5.344 18 C 0.230 3.770 19 C -0.546 4.546 20 H 0.082 0.918 21 C 0.080 3.920 22 N -0.883 5.883 23 Si 0.873 3.127 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.265 1.265 27 N -0.283 5.283 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.162 0.838 32 H 0.415 0.585 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.039 0.961 42 H 0.050 0.950 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 18.543 8.716 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.324 4.324 4 C 0.084 3.916 5 N -0.286 5.286 6 C 0.307 3.693 7 O -0.372 6.372 8 C -0.044 4.044 9 H 0.150 0.850 10 C -0.206 4.206 11 C -0.039 4.039 12 C -0.219 4.219 13 C -0.234 4.234 14 C -0.062 4.062 15 C -0.129 4.129 16 O -0.053 6.053 17 N -0.129 5.129 18 C 0.111 3.889 19 C -0.585 4.585 20 H 0.100 0.900 21 C -0.124 4.124 22 N -0.519 5.519 23 Si 0.699 3.301 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.190 1.190 27 N -0.108 5.108 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.180 0.820 32 H 0.252 0.748 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.910 17.332 8.857 19.485 hybrid contribution 1.369 0.084 0.146 1.380 sum 0.459 17.416 9.003 19.611 Atomic orbital electron populations 1.20034 0.87418 1.02621 1.02086 1.22049 0.96584 0.90947 1.01396 1.21285 0.89023 1.00518 1.21560 1.17884 0.88081 0.83029 1.02605 1.42725 1.08208 1.05466 1.72177 1.20351 0.91100 0.81276 0.76547 1.90676 1.26448 1.73545 1.46501 1.19844 0.94994 0.86216 1.03394 0.84974 1.21863 0.99885 1.03122 0.95718 1.21368 0.98080 0.93936 0.90510 1.21522 1.06338 0.92972 1.01052 1.21490 1.04437 0.99757 0.97689 1.22425 1.02905 0.83182 0.97726 1.20286 0.99023 0.94393 0.99207 1.83968 1.55828 1.21436 1.44094 1.48894 1.06190 1.01983 1.55835 1.19937 0.79295 0.90018 0.99690 1.21199 1.14229 1.32694 0.90336 0.90037 1.24824 0.96609 0.95207 0.95798 1.69870 1.26828 1.36560 1.18646 0.86905 0.79995 0.80711 0.82458 1.19470 1.20457 1.19006 1.77364 0.85791 1.21731 1.25900 0.91310 0.91029 0.91367 0.82036 0.74813 0.90752 0.90457 0.91263 0.83380 0.83614 0.90058 0.90663 0.89525 0.94324 0.93164 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.00 0.38 -0.57 16 2 C 0.06 1.12 7.21 -82.44 -0.59 0.52 16 3 C -0.29 -6.05 9.58 -39.78 -0.38 -6.43 16 4 C 0.31 6.41 7.66 -153.16 -1.17 5.24 16 5 N -0.64 -10.96 5.31 -11.46 -0.06 -11.02 16 6 C 0.52 8.37 7.11 -10.99 -0.08 8.29 16 7 O -0.50 -9.56 12.92 -1.64 -0.02 -9.58 16 8 C -0.02 -0.27 3.13 -92.92 -0.29 -0.57 16 9 H 0.13 1.26 8.10 -51.93 -0.42 0.84 16 10 C -0.15 -1.42 9.07 37.16 0.34 -1.08 16 11 C 0.01 0.16 5.20 -35.63 -0.19 -0.03 16 12 C -0.20 -2.40 10.78 -39.70 -0.43 -2.83 16 13 C -0.21 -2.42 10.81 -39.70 -0.43 -2.85 16 14 C -0.01 -0.14 7.32 -35.62 -0.26 -0.40 16 15 C -0.07 -0.56 10.42 36.01 0.38 -0.18 16 16 O -0.16 -2.25 10.34 -1.48 -0.02 -2.26 16 17 N -0.34 -7.91 3.60 -61.57 -0.22 -8.13 16 18 C 0.23 5.35 5.07 -5.19 -0.03 5.33 16 19 C -0.55 -14.83 9.94 -34.44 -0.34 -15.18 16 20 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 21 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 22 N -0.88 -25.46 13.96 55.43 0.77 -24.69 16 23 Si 0.87 19.33 27.47 -169.99 -4.67 14.66 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.40 6.54 56.52 0.37 -5.03 16 27 N -0.28 -6.54 12.56 33.65 0.42 -6.12 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.16 3.30 5.83 -52.49 -0.31 3.00 16 32 H 0.42 6.30 7.38 -40.82 -0.30 6.00 16 33 H 0.07 0.64 7.56 -51.93 -0.39 0.24 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.81 6.56 -51.93 -0.34 0.47 16 42 H 0.05 1.18 7.57 -51.93 -0.39 0.78 16 43 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -34.63 366.76 -7.44 -42.06 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.97 Total: 8.21 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -3.20 Total: -8.65 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.91 Total: -49.96 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -0.04 Total: -11.84 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.67 Total: 14.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.63 -7.44 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742574017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.692 kcal (2) G-P(sol) polarization free energy of solvation -34.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds