Wall clock time and date at job start Tue Mar 31 2020 11:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39761 * 125.83713 * 2 1 4 4 C 1.36114 * 107.82609 * 180.02562 * 3 2 1 5 5 N 1.39473 * 126.21308 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00252 * 359.97438 * 5 4 3 7 7 O 1.21296 * 119.99648 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00196 * 180.02562 * 6 5 4 9 9 H 1.08995 * 109.47142 * 59.99407 * 8 6 5 10 10 C 1.53005 * 109.46670 * 299.99770 * 8 6 5 11 11 C 1.50700 * 109.47121 * 180.02562 * 8 6 5 12 12 C 1.34510 * 125.78779 * 239.99709 * 11 8 6 13 13 C 1.41388 * 106.84077 * 180.02562 * 12 11 8 14 14 C 1.34515 * 106.83897 * 359.97438 * 13 12 11 15 15 C 1.50701 * 125.78600 * 180.02562 * 14 13 12 16 16 O 1.34305 * 125.78937 * 59.68970 * 11 8 6 17 17 N 1.35256 * 107.56876 * 0.02562 * 4 3 2 18 18 C 1.46504 * 126.04807 * 180.02562 * 17 4 3 19 19 C 1.50693 * 109.47102 * 270.00017 * 18 17 4 20 20 H 1.08004 * 120.00247 * 0.02562 * 19 18 17 21 21 C 1.37883 * 120.00172 * 179.97438 * 19 18 17 22 22 N 1.31503 * 120.00055 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99609 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47104 * 89.99650 * 23 21 19 25 25 H 1.48502 * 109.47228 * 209.99878 * 23 21 19 26 26 H 1.48501 * 109.47292 * 329.99809 * 23 21 19 27 27 N 1.30847 * 125.83772 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46966 * 270.01936 * 1 2 3 29 29 H 1.08994 * 109.47444 * 30.02388 * 1 2 3 30 30 H 1.09004 * 109.47212 * 150.02613 * 1 2 3 31 31 H 1.07997 * 126.08300 * 0.02654 * 3 2 1 32 32 H 0.97001 * 120.00169 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47093 * 60.00506 * 10 8 6 34 34 H 1.09005 * 109.46674 * 179.97438 * 10 8 6 35 35 H 1.08995 * 109.47042 * 299.99699 * 10 8 6 36 36 H 1.08001 * 126.58269 * 359.96785 * 12 11 8 37 37 H 1.08001 * 126.57889 * 180.02562 * 13 12 11 38 38 H 1.09001 * 109.46776 * 90.00300 * 15 14 13 39 39 H 1.09000 * 109.47150 * 210.00087 * 15 14 13 40 40 H 1.08998 * 109.47045 * 330.00367 * 15 14 13 41 41 H 1.08999 * 109.46543 * 30.00157 * 18 17 4 42 42 H 1.08997 * 109.47063 * 149.99681 * 18 17 4 43 43 H 0.97008 * 120.00104 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6197 0.7122 -0.0006 5 7 4.7512 1.5275 -0.0003 6 6 4.6157 2.8684 0.0002 7 8 3.5095 3.3661 -0.0002 8 6 5.8383 3.7494 -0.0001 9 1 6.4332 3.5452 -0.8903 10 6 6.6742 3.4620 1.2488 11 6 5.4153 5.1958 0.0011 12 6 5.7175 6.1046 -0.9434 13 6 5.1225 7.3235 -0.5444 14 6 4.4918 7.0865 0.6199 15 6 3.7142 8.0975 1.4226 16 8 4.6677 5.7947 0.9425 17 7 3.6092 -0.6404 -0.0015 18 6 4.7871 -1.5116 -0.0018 19 6 5.1912 -1.8093 -1.4227 20 1 4.6274 -1.3911 -2.2435 21 6 6.2814 -2.6149 -1.6750 22 7 6.6344 -2.8743 -2.9149 23 14 7.2570 -3.3377 -0.2554 24 1 6.6832 -4.6551 0.1194 25 1 8.6731 -3.5135 -0.6666 26 1 7.1902 -2.4192 0.9095 27 7 2.2731 -1.0607 -0.0005 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 1.9901 2.1597 0.0004 32 1 5.6358 1.1296 -0.0011 33 1 6.9802 2.4159 1.2484 34 1 7.5588 4.0990 1.2484 35 1 6.0793 3.6663 2.1390 36 1 6.3031 5.9358 -1.8350 37 1 5.1654 8.2642 -1.0733 38 1 2.6722 8.0917 1.1025 39 1 3.7706 7.8423 2.4808 40 1 4.1372 9.0896 1.2650 41 1 5.6082 -1.0124 0.5126 42 1 4.5498 -2.4435 0.5113 43 1 7.4017 -3.4408 -3.0925 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742574017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:54 Heat of formation + Delta-G solvation = 31.845455 kcal Electronic energy + Delta-G solvation = -26311.488150 eV Core-core repulsion = 22552.409009 eV Total energy + Delta-G solvation = -3759.079141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.58718 -42.48976 -40.70714 -36.35809 -35.62424 -35.39046 -34.06821 -33.99553 -32.06310 -31.11737 -29.83436 -28.03821 -27.42078 -25.52405 -24.34845 -22.91061 -22.66186 -21.43617 -21.15755 -20.48480 -19.26867 -18.67592 -17.91571 -17.49395 -17.01078 -16.83074 -16.39568 -16.24534 -15.60197 -15.52177 -15.12931 -14.88686 -14.55646 -14.40039 -14.12750 -13.93778 -13.82472 -13.71897 -13.69450 -13.55474 -13.38751 -13.16484 -13.02777 -12.90871 -12.60062 -12.58032 -12.49130 -12.13058 -11.85363 -11.79552 -11.49637 -10.96215 -10.92884 -10.77239 -9.65036 -9.22657 -9.12390 -8.42446 -6.55511 0.68108 0.70566 1.25941 1.35374 1.37964 1.46892 1.55399 1.69608 1.95855 1.99779 2.18122 2.24731 2.89315 3.33779 3.48254 3.74909 3.87107 3.97214 4.13291 4.16749 4.21810 4.44412 4.54775 4.57919 4.62129 4.68796 4.71724 4.74905 4.81461 4.86131 4.87269 4.89394 4.93310 5.06355 5.11025 5.14836 5.16658 5.19488 5.29364 5.66609 5.84626 5.94619 6.14354 6.26138 6.30145 6.48761 6.85970 6.95132 7.09466 8.73964 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013127 B = 0.003794 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.506677 B = 7377.588154 C = 8869.443332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.061 3.939 3 C -0.309 4.309 4 C 0.304 3.696 5 N -0.634 5.634 6 C 0.521 3.479 7 O -0.533 6.533 8 C -0.014 4.014 9 H 0.158 0.842 10 C -0.144 4.144 11 C -0.015 4.015 12 C -0.203 4.203 13 C -0.225 4.225 14 C -0.025 4.025 15 C -0.073 4.073 16 O -0.184 6.184 17 N -0.365 5.365 18 C 0.237 3.763 19 C -0.555 4.555 20 H 0.022 0.978 21 C 0.026 3.974 22 N -0.934 5.934 23 Si 0.950 3.050 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.230 1.230 27 N -0.327 5.327 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.163 0.837 32 H 0.424 0.576 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.167 0.833 37 H 0.170 0.830 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.071 0.929 42 H 0.051 0.949 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.813 19.780 10.519 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C -0.341 4.341 4 C 0.081 3.919 5 N -0.283 5.283 6 C 0.309 3.691 7 O -0.407 6.407 8 C -0.035 4.035 9 H 0.175 0.825 10 C -0.201 4.201 11 C -0.065 4.065 12 C -0.223 4.223 13 C -0.243 4.243 14 C -0.076 4.076 15 C -0.129 4.129 16 O -0.081 6.081 17 N -0.150 5.150 18 C 0.118 3.882 19 C -0.593 4.593 20 H 0.040 0.960 21 C -0.175 4.175 22 N -0.572 5.572 23 Si 0.771 3.229 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.152 1.152 27 N -0.151 5.151 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.181 0.819 32 H 0.263 0.737 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.184 0.816 37 H 0.188 0.812 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.131 0.869 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.241 18.599 10.666 21.442 hybrid contribution 0.897 -0.171 -0.526 1.054 sum 1.138 18.428 10.139 21.064 Atomic orbital electron populations 1.20233 0.83922 1.03818 1.04026 1.22867 0.98761 0.89996 0.98784 1.21460 0.89369 1.00721 1.22515 1.18255 0.89541 0.82784 1.01293 1.42882 1.07637 1.05661 1.72093 1.21252 0.92156 0.80851 0.74864 1.90647 1.28267 1.73932 1.47833 1.19962 0.93186 0.84704 1.05686 0.82468 1.21889 0.99963 1.04411 0.93863 1.21658 0.99172 0.94597 0.91116 1.21898 1.06036 0.93149 1.01169 1.21871 1.04149 1.00555 0.97773 1.23245 1.02924 0.82897 0.98496 1.20471 0.98936 0.94558 0.98903 1.83951 1.56482 1.22693 1.44959 1.48836 1.06150 1.02608 1.57405 1.19793 0.80467 0.90773 0.97192 1.21214 1.14113 1.33055 0.90934 0.95989 1.25826 0.97540 0.95092 0.99025 1.70030 1.27833 1.37642 1.21652 0.85693 0.77908 0.80021 0.79256 1.19511 1.19694 1.15236 1.77303 0.86280 1.23350 1.28209 0.88870 0.89124 0.90825 0.81939 0.73734 0.89495 0.88252 0.92479 0.81588 0.81247 0.89592 0.90277 0.86902 0.91152 0.93074 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.77 10.44 71.23 0.74 -1.02 16 2 C 0.06 2.49 7.21 43.07 0.31 2.80 16 3 C -0.31 -12.93 9.58 22.14 0.21 -12.72 16 4 C 0.30 12.85 7.66 131.32 1.01 13.85 16 5 N -0.63 -21.56 5.31 -308.56 -1.64 -23.20 16 6 C 0.52 16.55 7.11 87.66 0.62 17.17 16 7 O -0.53 -20.62 12.92 3.79 0.05 -20.57 16 8 C -0.01 -0.32 3.13 -12.28 -0.04 -0.36 16 9 H 0.16 2.68 8.10 -2.39 -0.02 2.66 16 10 C -0.14 -2.47 9.07 71.98 0.65 -1.82 16 11 C -0.02 -0.39 5.20 24.83 0.13 -0.26 16 12 C -0.20 -4.60 10.78 22.19 0.24 -4.36 16 13 C -0.22 -4.70 10.81 22.19 0.24 -4.46 16 14 C -0.03 -0.57 7.32 24.83 0.18 -0.39 16 15 C -0.07 -0.99 10.42 71.24 0.74 -0.25 16 16 O -0.18 -5.19 10.34 4.35 0.04 -5.14 16 17 N -0.36 -16.97 3.60 -348.72 -1.26 -18.23 16 18 C 0.24 10.96 5.07 85.63 0.43 11.39 16 19 C -0.56 -30.92 9.94 25.60 0.25 -30.67 16 20 H 0.02 1.44 8.06 -2.91 -0.02 1.42 16 21 C 0.03 1.39 5.47 84.66 0.46 1.85 16 22 N -0.93 -55.18 13.96 21.45 0.30 -54.88 16 23 Si 0.95 38.83 27.47 68.60 1.88 40.71 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 26 H -0.23 -8.01 6.54 99.48 0.65 -7.36 16 27 N -0.33 -15.33 12.56 -47.45 -0.60 -15.93 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 30 H 0.07 2.03 8.14 -2.38 -0.02 2.02 16 31 H 0.16 6.75 5.83 -2.91 -0.02 6.73 16 32 H 0.42 12.43 7.38 -92.71 -0.68 11.74 16 33 H 0.09 1.26 7.56 -2.39 -0.02 1.24 16 34 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 37 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 2.78 6.56 -2.39 -0.02 2.76 16 42 H 0.05 2.34 7.57 -2.39 -0.02 2.33 16 43 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -79.22 366.76 5.28 -73.94 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.30 Total: 32.55 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 6.19 Total: -9.26 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -3.19 Total: -112.23 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: 0.09 Total: -25.71 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.88 Total: 40.71 kcal Total: -79.22 5.28 -73.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742574017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.790 kcal (2) G-P(sol) polarization free energy of solvation -79.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds