Wall clock time and date at job start Tue Mar 31 2020 11:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39760 * 125.83847 * 2 1 4 4 C 1.36109 * 107.82449 * 180.15932 * 3 2 1 5 5 N 1.39479 * 126.21735 * 179.84446 * 4 3 2 6 6 C 1.34777 * 119.99460 * 359.69240 * 5 4 3 7 7 O 1.21293 * 120.00456 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72541 * 6 5 4 9 9 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 10 10 C 1.52996 * 109.47442 * 60.27868 * 8 6 5 11 11 C 1.50703 * 109.47148 * 180.28037 * 8 6 5 12 12 C 1.34514 * 125.79462 * 119.71472 * 11 8 6 13 13 C 1.41376 * 106.84280 * 179.89125 * 12 11 8 14 14 C 1.34511 * 106.84076 * 0.36855 * 13 12 11 15 15 C 1.50700 * 125.78875 * 179.75277 * 14 13 12 16 16 O 1.34298 * 108.42113 * 359.77469 * 14 13 12 17 17 N 1.35264 * 107.57265 * 359.58737 * 4 3 2 18 18 C 1.46490 * 126.04937 * 180.23556 * 17 4 3 19 19 C 1.50708 * 109.46990 * 90.00107 * 18 17 4 20 20 H 1.08000 * 119.99671 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00030 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00023 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00080 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46796 * 89.99655 * 23 21 19 25 25 H 1.48497 * 109.47087 * 209.99859 * 23 21 19 26 26 H 1.48496 * 109.46735 * 330.00379 * 23 21 19 27 27 N 1.30848 * 125.83569 * 179.69263 * 2 1 3 28 28 H 1.09004 * 109.47206 * 270.28172 * 1 2 3 29 29 H 1.09002 * 109.46598 * 30.27555 * 1 2 3 30 30 H 1.08996 * 109.47328 * 150.27965 * 1 2 3 31 31 H 1.07998 * 126.08710 * 0.02562 * 3 2 1 32 32 H 0.97001 * 120.00055 * 179.69940 * 5 4 3 33 33 H 1.08995 * 109.47223 * 59.99497 * 10 8 6 34 34 H 1.08996 * 109.47637 * 180.02562 * 10 8 6 35 35 H 1.09004 * 109.46762 * 299.99804 * 10 8 6 36 36 H 1.08004 * 126.57540 * 0.02562 * 12 11 8 37 37 H 1.08000 * 126.57899 * 180.12190 * 13 12 11 38 38 H 1.09008 * 109.47103 * 180.02562 * 15 14 13 39 39 H 1.09000 * 109.47113 * 299.99921 * 15 14 13 40 40 H 1.08998 * 109.47121 * 60.00392 * 15 14 13 41 41 H 1.09003 * 109.47347 * 209.99472 * 18 17 4 42 42 H 1.09003 * 109.47685 * 330.00117 * 18 17 4 43 43 H 0.97003 * 119.99988 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7121 -0.0036 5 7 4.7513 1.5274 -0.0079 6 6 4.6157 2.8683 -0.0150 7 8 3.5096 3.3661 -0.0172 8 6 5.8384 3.7492 -0.0134 9 1 6.4319 3.5456 0.8780 10 6 6.6763 3.4611 -1.2607 11 6 5.4154 5.1957 -0.0154 12 6 5.7118 6.1034 0.9320 13 6 5.1210 7.3232 0.5297 14 6 4.4920 7.0859 -0.6353 15 6 3.7147 8.0965 -1.4389 16 8 4.6736 5.7957 -0.9607 17 7 3.6092 -0.6405 0.0035 18 6 4.7870 -1.5116 0.0076 19 6 5.1913 -1.8029 1.4299 20 1 4.6276 -1.3809 2.2488 21 6 6.2809 -2.6081 1.6857 22 7 6.9671 -3.1224 0.6886 23 14 6.7826 -2.9686 3.4487 24 1 6.0822 -4.1893 3.9228 25 1 8.2505 -3.1841 3.5114 26 1 6.4135 -1.8190 4.3132 27 7 2.2730 -1.0608 0.0057 28 1 -0.3634 0.0051 1.0277 29 1 -0.3632 0.8875 -0.5181 30 1 -0.3634 -0.8924 -0.5095 31 1 1.9902 2.1597 0.0004 32 1 5.6359 1.1293 -0.0058 33 1 6.0830 3.6648 -2.1520 34 1 7.5609 4.0979 -1.2593 35 1 6.9823 2.4149 -1.2591 36 1 6.2919 5.9335 1.8270 37 1 5.1630 8.2639 1.0586 38 1 3.3166 7.6197 -2.3347 39 1 2.8921 8.4837 -0.8377 40 1 4.3729 8.9167 -1.7255 41 1 4.5496 -2.4460 -0.5011 42 1 5.6082 -1.0149 -0.5091 43 1 7.7334 -3.6892 0.8686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742574019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:58 Heat of formation + Delta-G solvation = 47.526312 kcal Electronic energy + Delta-G solvation = -26271.604232 eV Core-core repulsion = 22513.205064 eV Total energy + Delta-G solvation = -3758.399168 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.66199 -40.86240 -39.25820 -34.78626 -34.40414 -33.76436 -33.18248 -32.07462 -31.23423 -29.14519 -28.17201 -26.63448 -26.04311 -24.39643 -22.87817 -21.86158 -21.50930 -20.15839 -19.72903 -19.11838 -17.22634 -16.80209 -16.56658 -16.26633 -15.97389 -15.36852 -14.99686 -14.56865 -14.45614 -14.08415 -13.85712 -13.50674 -13.28253 -13.10951 -12.91953 -12.82132 -12.77552 -12.51426 -12.50124 -12.20635 -12.04158 -11.77499 -11.73436 -11.66412 -11.57131 -11.08334 -10.90589 -10.38945 -10.34425 -9.93549 -9.84429 -9.82317 -9.47312 -8.73791 -8.33220 -7.91902 -7.43960 -6.35102 -4.43666 1.63929 2.23514 2.49631 2.78915 2.91806 3.09289 3.15598 3.22685 3.27139 3.60093 3.79075 4.22943 4.31204 4.57408 4.74286 4.79776 4.95677 4.98257 5.03545 5.22970 5.26328 5.36609 5.43983 5.51991 5.53710 5.64053 5.76801 5.85317 5.95001 6.04321 6.08513 6.16394 6.18849 6.27359 6.42215 6.48495 6.66873 6.82625 7.03468 7.16363 7.50918 7.57040 7.61836 7.78165 7.90305 8.28291 8.61137 8.70309 9.24086 10.71960 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012663 B = 0.003733 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.565636 B = 7497.987190 C = 8979.768120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.051 3.949 3 C -0.295 4.295 4 C 0.302 3.698 5 N -0.637 5.637 6 C 0.521 3.479 7 O -0.501 6.501 8 C -0.023 4.023 9 H 0.131 0.869 10 C -0.149 4.149 11 C 0.013 3.987 12 C -0.201 4.201 13 C -0.215 4.215 14 C -0.012 4.012 15 C -0.073 4.073 16 O -0.157 6.157 17 N -0.344 5.344 18 C 0.257 3.743 19 C -0.541 4.541 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.906 3.094 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.272 1.272 27 N -0.285 5.285 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.160 0.840 32 H 0.416 0.584 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.867 18.845 -3.589 19.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.327 4.327 4 C 0.080 3.920 5 N -0.285 5.285 6 C 0.306 3.694 7 O -0.374 6.374 8 C -0.044 4.044 9 H 0.149 0.851 10 C -0.206 4.206 11 C -0.038 4.038 12 C -0.220 4.220 13 C -0.234 4.234 14 C -0.062 4.062 15 C -0.129 4.129 16 O -0.053 6.053 17 N -0.130 5.130 18 C 0.139 3.861 19 C -0.579 4.579 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.733 3.267 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.111 5.111 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.178 0.822 32 H 0.253 0.747 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.418 17.614 -3.906 18.097 hybrid contribution 1.126 0.289 1.285 1.733 sum -0.291 17.902 -2.620 18.095 Atomic orbital electron populations 1.20017 0.87603 1.02312 1.02146 1.22023 0.96507 0.91030 1.01840 1.21266 0.89120 1.00427 1.21885 1.17912 0.87973 0.83336 1.02813 1.42726 1.08331 1.05393 1.72032 1.20340 0.91044 0.81349 0.76627 1.90673 1.26458 1.73585 1.46655 1.19844 0.95032 0.86186 1.03387 0.85101 1.21861 0.99798 1.03260 0.95686 1.21387 0.98215 0.93948 0.90240 1.21508 1.06503 0.92961 1.01022 1.21465 1.04490 0.99686 0.97803 1.22418 1.02884 0.83226 0.97708 1.20287 0.98787 0.94514 0.99356 1.83978 1.55993 1.21523 1.43770 1.49345 1.06531 1.02137 1.54960 1.19619 0.77826 0.89780 0.98898 1.21350 1.13293 1.31926 0.91351 0.91701 1.24934 0.95679 0.94853 0.98194 1.69918 1.19238 1.32462 1.31133 0.86357 0.77629 0.79112 0.83632 1.20203 1.20822 1.19671 1.77352 0.86134 1.21787 1.25800 0.91320 0.91177 0.91541 0.82235 0.74665 0.91272 0.90523 0.90584 0.83443 0.83641 0.90589 0.89743 0.89872 0.92542 0.93824 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.44 36.00 0.38 -0.57 16 2 C 0.05 1.04 7.21 -82.44 -0.59 0.45 16 3 C -0.30 -6.22 9.58 -39.78 -0.38 -6.60 16 4 C 0.30 6.46 7.66 -153.15 -1.17 5.28 16 5 N -0.64 -11.18 5.31 -11.46 -0.06 -11.24 16 6 C 0.52 8.49 7.11 -10.98 -0.08 8.41 16 7 O -0.50 -9.72 12.93 -1.29 -0.02 -9.74 16 8 C -0.02 -0.28 3.13 -92.92 -0.29 -0.57 16 9 H 0.13 1.26 8.10 -51.92 -0.42 0.84 16 10 C -0.15 -1.49 9.07 37.16 0.34 -1.16 16 11 C 0.01 0.17 5.20 -35.62 -0.19 -0.01 16 12 C -0.20 -2.43 10.78 -39.71 -0.43 -2.85 16 13 C -0.22 -2.44 10.81 -39.71 -0.43 -2.87 16 14 C -0.01 -0.14 7.32 -35.63 -0.26 -0.40 16 15 C -0.07 -0.57 10.42 36.01 0.38 -0.19 16 16 O -0.16 -2.27 10.35 -1.12 -0.01 -2.28 16 17 N -0.34 -8.12 3.60 -61.57 -0.22 -8.35 16 18 C 0.26 6.38 6.01 -5.20 -0.03 6.35 16 19 C -0.54 -14.45 9.39 -34.44 -0.32 -14.78 16 20 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 21 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -24.08 13.29 55.43 0.74 -23.34 16 23 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 N -0.29 -6.73 12.56 33.65 0.42 -6.31 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.16 3.32 5.83 -52.49 -0.31 3.02 16 32 H 0.42 6.59 7.39 -40.82 -0.30 6.29 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.71 7.57 -51.93 -0.39 0.31 16 36 H 0.15 1.46 8.06 -52.48 -0.42 1.03 16 37 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 42 H 0.04 1.04 7.50 -51.93 -0.39 0.65 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -33.24 370.40 -7.78 -41.02 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.01 Total: 7.01 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -3.18 Total: -7.84 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.88 Total: -49.24 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.03 Total: -12.02 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.24 -7.78 -41.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742574019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.544 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds