Wall clock time and date at job start Tue Mar 31 2020 11:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39760 * 125.83847 * 2 1 4 4 C 1.36109 * 107.82449 * 180.15932 * 3 2 1 5 5 N 1.39479 * 126.21735 * 179.84446 * 4 3 2 6 6 C 1.34777 * 119.99460 * 359.69240 * 5 4 3 7 7 O 1.21293 * 120.00456 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72541 * 6 5 4 9 9 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 10 10 C 1.52996 * 109.47442 * 60.27868 * 8 6 5 11 11 C 1.50703 * 109.47148 * 180.28037 * 8 6 5 12 12 C 1.34514 * 125.79462 * 119.71472 * 11 8 6 13 13 C 1.41376 * 106.84280 * 179.89125 * 12 11 8 14 14 C 1.34511 * 106.84076 * 0.36855 * 13 12 11 15 15 C 1.50700 * 125.78875 * 179.75277 * 14 13 12 16 16 O 1.34298 * 108.42113 * 359.77469 * 14 13 12 17 17 N 1.35264 * 107.57265 * 359.58737 * 4 3 2 18 18 C 1.46490 * 126.04937 * 180.23556 * 17 4 3 19 19 C 1.50708 * 109.46990 * 90.00107 * 18 17 4 20 20 H 1.08000 * 119.99671 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00030 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00023 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00080 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46796 * 89.99655 * 23 21 19 25 25 H 1.48497 * 109.47087 * 209.99859 * 23 21 19 26 26 H 1.48496 * 109.46735 * 330.00379 * 23 21 19 27 27 N 1.30848 * 125.83569 * 179.69263 * 2 1 3 28 28 H 1.09004 * 109.47206 * 270.28172 * 1 2 3 29 29 H 1.09002 * 109.46598 * 30.27555 * 1 2 3 30 30 H 1.08996 * 109.47328 * 150.27965 * 1 2 3 31 31 H 1.07998 * 126.08710 * 0.02562 * 3 2 1 32 32 H 0.97001 * 120.00055 * 179.69940 * 5 4 3 33 33 H 1.08995 * 109.47223 * 59.99497 * 10 8 6 34 34 H 1.08996 * 109.47637 * 180.02562 * 10 8 6 35 35 H 1.09004 * 109.46762 * 299.99804 * 10 8 6 36 36 H 1.08004 * 126.57540 * 0.02562 * 12 11 8 37 37 H 1.08000 * 126.57899 * 180.12190 * 13 12 11 38 38 H 1.09008 * 109.47103 * 180.02562 * 15 14 13 39 39 H 1.09000 * 109.47113 * 299.99921 * 15 14 13 40 40 H 1.08998 * 109.47121 * 60.00392 * 15 14 13 41 41 H 1.09003 * 109.47347 * 209.99472 * 18 17 4 42 42 H 1.09003 * 109.47685 * 330.00117 * 18 17 4 43 43 H 0.97003 * 119.99988 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7121 -0.0036 5 7 4.7513 1.5274 -0.0079 6 6 4.6157 2.8683 -0.0150 7 8 3.5096 3.3661 -0.0172 8 6 5.8384 3.7492 -0.0134 9 1 6.4319 3.5456 0.8780 10 6 6.6763 3.4611 -1.2607 11 6 5.4154 5.1957 -0.0154 12 6 5.7118 6.1034 0.9320 13 6 5.1210 7.3232 0.5297 14 6 4.4920 7.0859 -0.6353 15 6 3.7147 8.0965 -1.4389 16 8 4.6736 5.7957 -0.9607 17 7 3.6092 -0.6405 0.0035 18 6 4.7870 -1.5116 0.0076 19 6 5.1913 -1.8029 1.4299 20 1 4.6276 -1.3809 2.2488 21 6 6.2809 -2.6081 1.6857 22 7 6.9671 -3.1224 0.6886 23 14 6.7826 -2.9686 3.4487 24 1 6.0822 -4.1893 3.9228 25 1 8.2505 -3.1841 3.5114 26 1 6.4135 -1.8190 4.3132 27 7 2.2730 -1.0608 0.0057 28 1 -0.3634 0.0051 1.0277 29 1 -0.3632 0.8875 -0.5181 30 1 -0.3634 -0.8924 -0.5095 31 1 1.9902 2.1597 0.0004 32 1 5.6359 1.1293 -0.0058 33 1 6.0830 3.6648 -2.1520 34 1 7.5609 4.0979 -1.2593 35 1 6.9823 2.4149 -1.2591 36 1 6.2919 5.9335 1.8270 37 1 5.1630 8.2639 1.0586 38 1 3.3166 7.6197 -2.3347 39 1 2.8921 8.4837 -0.8377 40 1 4.3729 8.9167 -1.7255 41 1 4.5496 -2.4460 -0.5011 42 1 5.6082 -1.0149 -0.5091 43 1 7.7334 -3.6892 0.8686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742574019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:57 Heat of formation + Delta-G solvation = 28.282422 kcal Electronic energy + Delta-G solvation = -26272.438710 eV Core-core repulsion = 22513.205064 eV Total energy + Delta-G solvation = -3759.233646 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.58306 -42.44998 -40.68308 -36.32837 -35.65185 -35.38996 -34.06079 -33.83936 -32.04864 -30.76453 -29.77668 -27.82925 -27.42268 -25.52693 -24.69996 -22.91346 -22.65340 -21.40561 -21.14581 -20.45907 -18.91294 -18.55528 -17.88118 -17.47709 -16.99169 -16.78223 -16.52692 -16.15040 -15.72687 -15.49432 -15.13950 -14.61687 -14.48876 -14.37345 -14.06050 -13.94930 -13.72773 -13.68358 -13.65089 -13.44812 -13.33805 -13.13784 -13.00075 -12.88722 -12.72313 -12.60615 -12.50417 -12.29676 -11.94964 -11.70110 -11.46491 -10.94248 -10.76685 -10.76172 -9.65874 -9.21521 -9.10286 -8.36648 -6.54189 0.69401 0.73790 1.31626 1.36598 1.39362 1.49418 1.58013 1.70866 1.97385 2.01843 2.20112 2.35224 2.93892 3.35007 3.49062 3.80734 3.87228 3.97593 4.14253 4.18670 4.24095 4.55709 4.59332 4.66434 4.69775 4.73858 4.74833 4.82239 4.84506 4.87160 4.87693 4.90638 4.94623 5.06306 5.14514 5.18528 5.21365 5.30174 5.50790 5.67515 5.76249 5.93095 6.11164 6.24367 6.27142 6.56071 6.89013 7.00035 7.17965 8.69873 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012663 B = 0.003733 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.565636 B = 7497.987190 C = 8979.768120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.059 3.941 3 C -0.310 4.310 4 C 0.301 3.699 5 N -0.634 5.634 6 C 0.521 3.479 7 O -0.533 6.533 8 C -0.013 4.013 9 H 0.160 0.840 10 C -0.144 4.144 11 C -0.016 4.016 12 C -0.201 4.201 13 C -0.225 4.225 14 C -0.026 4.026 15 C -0.073 4.073 16 O -0.185 6.185 17 N -0.365 5.365 18 C 0.272 3.728 19 C -0.557 4.557 20 H 0.047 0.953 21 C 0.029 3.971 22 N -0.913 5.913 23 Si 0.969 3.031 24 H -0.278 1.278 25 H -0.267 1.267 26 H -0.270 1.270 27 N -0.330 5.330 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.163 0.837 32 H 0.423 0.577 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.168 0.832 37 H 0.170 0.830 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.027 0.973 42 H 0.051 0.949 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.225 20.492 -2.626 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.342 4.342 4 C 0.078 3.922 5 N -0.282 5.282 6 C 0.309 3.691 7 O -0.407 6.407 8 C -0.034 4.034 9 H 0.177 0.823 10 C -0.201 4.201 11 C -0.066 4.066 12 C -0.220 4.220 13 C -0.244 4.244 14 C -0.076 4.076 15 C -0.129 4.129 16 O -0.082 6.082 17 N -0.151 5.151 18 C 0.153 3.847 19 C -0.595 4.595 20 H 0.065 0.935 21 C -0.173 4.173 22 N -0.550 5.550 23 Si 0.793 3.207 24 H -0.204 1.204 25 H -0.192 1.192 26 H -0.195 1.195 27 N -0.155 5.155 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.180 0.820 32 H 0.262 0.738 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.186 0.814 37 H 0.188 0.812 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.756 19.277 -2.954 19.516 hybrid contribution 0.858 -0.118 0.947 1.284 sum 0.102 19.159 -2.006 19.264 Atomic orbital electron populations 1.20222 0.83935 1.04028 1.03719 1.22866 0.98735 0.89991 0.99028 1.21442 0.89300 1.00672 1.22738 1.18289 0.89497 0.82895 1.01511 1.42901 1.07670 1.05658 1.72011 1.21241 0.92142 0.80831 0.74911 1.90641 1.28235 1.73922 1.47930 1.19948 0.93166 0.84779 1.05545 0.82282 1.21873 0.99997 1.04218 0.94057 1.21654 0.99479 0.94548 0.90932 1.21893 1.06022 0.93015 1.01114 1.21843 1.04177 1.00511 0.97829 1.23245 1.02914 0.82912 0.98514 1.20472 0.99299 0.94155 0.98970 1.83961 1.56706 1.22823 1.44702 1.49175 1.06337 1.02764 1.56776 1.19253 0.78571 0.88992 0.97874 1.21402 1.13757 1.32777 0.91573 0.93494 1.25662 0.95331 0.94231 1.02034 1.69987 1.19534 1.32574 1.32943 0.85398 0.77918 0.78586 0.78838 1.20387 1.19203 1.19505 1.77302 0.86457 1.23511 1.28222 0.89662 0.88780 0.90494 0.81969 0.73819 0.92661 0.88200 0.89878 0.81439 0.81216 0.90895 0.88378 0.87478 0.95490 0.93173 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.76 10.44 71.24 0.74 -1.02 16 2 C 0.06 2.43 7.21 43.07 0.31 2.74 16 3 C -0.31 -13.18 9.58 22.14 0.21 -12.97 16 4 C 0.30 13.11 7.66 131.31 1.01 14.11 16 5 N -0.63 -22.41 5.31 -308.55 -1.64 -24.05 16 6 C 0.52 16.93 7.11 87.66 0.62 17.55 16 7 O -0.53 -20.87 12.93 3.47 0.04 -20.83 16 8 C -0.01 -0.31 3.13 -12.29 -0.04 -0.35 16 9 H 0.16 2.72 8.10 -2.38 -0.02 2.70 16 10 C -0.14 -2.73 9.07 71.98 0.65 -2.07 16 11 C -0.02 -0.41 5.20 24.83 0.13 -0.28 16 12 C -0.20 -4.52 10.78 22.19 0.24 -4.28 16 13 C -0.22 -4.69 10.81 22.19 0.24 -4.45 16 14 C -0.03 -0.58 7.32 24.83 0.18 -0.40 16 15 C -0.07 -1.02 10.42 71.24 0.74 -0.28 16 16 O -0.18 -5.31 10.35 4.08 0.04 -5.27 16 17 N -0.37 -17.74 3.60 -348.71 -1.26 -19.00 16 18 C 0.27 13.97 6.01 85.64 0.51 14.49 16 19 C -0.56 -30.31 9.39 25.60 0.24 -30.07 16 20 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 21 C 0.03 1.54 5.46 84.65 0.46 2.00 16 22 N -0.91 -49.36 13.29 21.45 0.28 -49.07 16 23 Si 0.97 41.66 29.54 68.60 2.03 43.69 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 N -0.33 -15.93 12.56 -47.45 -0.60 -16.53 16 28 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.16 6.82 5.83 -2.91 -0.02 6.80 16 32 H 0.42 13.44 7.39 -92.71 -0.69 12.75 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.44 7.57 -2.38 -0.02 1.42 16 36 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 2.46 7.50 -2.39 -0.02 2.44 16 43 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -73.07 370.40 5.51 -67.56 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.35 Total: 28.77 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 6.26 Total: -5.27 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -3.21 Total: -108.65 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: 0.09 Total: -26.10 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -73.07 5.51 -67.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742574019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.841 kcal (2) G-P(sol) polarization free energy of solvation -73.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds