Wall clock time and date at job start Tue Mar 31 2020 11:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00469 * 2 1 4 4 H 1.48502 * 109.47181 * 272.94988 * 3 2 1 5 5 H 1.48500 * 109.46921 * 32.94632 * 3 2 1 6 6 H 1.48501 * 109.47269 * 152.94819 * 3 2 1 7 7 C 1.38824 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99615 * 339.33846 * 7 2 1 9 9 N 1.36938 * 119.99856 * 159.34103 * 7 2 1 10 10 C 1.46925 * 120.62661 * 152.58068 * 9 7 2 11 11 C 1.53197 * 108.77067 * 126.39356 * 10 9 7 12 12 C 1.53041 * 109.31664 * 54.63204 * 11 10 9 13 13 C 1.53042 * 109.53772 * 298.63574 * 12 11 10 14 14 H 1.08998 * 109.49477 * 301.38088 * 13 12 11 15 15 C 1.52993 * 109.49775 * 181.31417 * 13 12 11 16 16 N 1.46499 * 109.47275 * 175.06161 * 15 13 12 17 17 C 1.34780 * 119.99771 * 179.97438 * 16 15 13 18 18 O 1.21723 * 120.00203 * 0.02562 * 17 16 15 19 19 C 1.46499 * 119.99771 * 179.97438 * 17 16 15 20 20 C 1.37776 * 125.85797 * 179.97438 * 19 17 16 21 21 C 1.39944 * 107.68452 * 180.02562 * 20 19 17 22 22 O 1.35113 * 145.13535 * 180.02562 * 21 20 19 23 23 C 1.34384 * 109.62097 * 179.97438 * 22 21 20 24 24 C 1.34465 * 109.44765 * 359.97438 * 23 22 21 25 25 C 1.39126 * 107.40268 * 0.02562 * 21 20 19 26 26 N 1.37108 * 108.11440 * 359.79450 * 25 21 20 27 27 H 0.97004 * 125.74822 * 180.32540 * 26 25 21 28 28 C 1.46930 * 120.60557 * 332.55897 * 9 7 2 29 29 H 0.97009 * 119.99869 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.58784 * 6.60457 * 10 9 7 31 31 H 1.08998 * 109.70493 * 246.24440 * 10 9 7 32 32 H 1.09008 * 109.49568 * 294.67755 * 11 10 9 33 33 H 1.08999 * 109.49469 * 174.58609 * 11 10 9 34 34 H 1.08997 * 109.45935 * 178.61121 * 12 11 10 35 35 H 1.09000 * 109.44588 * 58.65108 * 12 11 10 36 36 H 1.09005 * 109.47304 * 55.06236 * 15 13 12 37 37 H 1.08999 * 109.47343 * 295.06701 * 15 13 12 38 38 H 0.96997 * 119.99767 * 0.02562 * 16 15 13 39 39 H 1.08000 * 126.15814 * 359.97438 * 20 19 17 40 40 H 1.08003 * 125.27521 * 180.02562 * 23 22 21 41 41 H 1.07998 * 126.41550 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.56311 * 113.80436 * 28 9 7 43 43 H 1.09003 * 109.61770 * 353.38439 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4354 2.0824 -1.3982 5 1 1.4803 2.6338 0.7614 6 1 3.5776 1.4228 0.6367 7 6 2.0102 -1.2023 -0.0005 8 1 1.5222 -2.1076 0.3291 9 7 3.3135 -1.2402 -0.4190 10 6 4.2350 -2.2628 0.0946 11 6 4.8748 -2.9905 -1.0920 12 6 5.5283 -1.9655 -2.0218 13 6 4.4613 -1.0093 -2.5599 14 1 3.6988 -1.5776 -3.0925 15 6 5.1102 -0.0054 -3.5148 16 7 4.0729 0.8338 -4.1199 17 6 4.4131 1.7961 -5.0001 18 8 5.5821 1.9677 -5.2926 19 6 3.3758 2.6348 -5.6056 20 6 3.5862 3.6487 -6.5143 21 6 2.3391 4.1947 -6.8386 22 8 1.6945 5.1274 -7.5734 23 6 0.3727 5.0481 -7.3442 24 6 0.1300 4.0654 -6.4591 25 6 1.3783 3.4971 -6.1135 26 7 2.0183 2.5427 -5.3656 27 1 1.5902 1.9093 -4.7686 28 6 3.8162 -0.2591 -1.3904 29 1 -0.4850 0.8401 -0.0004 30 1 3.6842 -2.9766 0.7071 31 1 5.0120 -1.7893 0.6948 32 1 4.1081 -3.5402 -1.6380 33 1 5.6314 -3.6854 -0.7276 34 1 6.0055 -2.4826 -2.8542 35 1 6.2775 -1.3994 -1.4685 36 1 5.6456 -0.5424 -4.2978 37 1 5.8089 0.6226 -2.9620 38 1 3.1414 0.6972 -3.8864 39 1 4.5417 3.9657 -6.9054 40 1 -0.3782 5.6759 -7.8008 41 1 -0.8369 3.7665 -6.0822 42 1 4.5584 0.3804 -0.9125 43 1 2.9894 0.3488 -1.7577 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764355720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:51 Heat of formation + Delta-G solvation = 44.720603 kcal Electronic energy + Delta-G solvation = -26571.121456 eV Core-core repulsion = 22812.600623 eV Total energy + Delta-G solvation = -3758.520833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.02886 -40.25074 -38.84075 -37.99191 -35.00245 -33.21876 -32.48972 -31.39559 -30.77003 -30.51352 -28.55228 -25.97854 -25.39413 -23.49350 -22.43422 -21.74569 -21.07082 -20.78673 -20.17036 -19.41791 -18.46906 -17.23837 -16.92957 -16.37516 -16.18844 -15.71394 -15.45027 -15.16327 -14.50655 -14.33539 -14.05458 -13.73574 -13.62088 -13.54504 -13.36900 -13.25577 -12.94858 -12.89612 -12.49494 -12.17681 -11.87384 -11.72409 -11.55876 -10.90188 -10.70064 -10.62601 -10.26396 -10.22913 -10.20771 -9.95667 -9.80961 -9.57266 -9.12147 -8.74390 -8.72477 -7.99267 -7.09188 -6.07981 -3.43439 0.88090 2.11040 2.37733 2.56532 2.75974 3.13987 3.23083 3.27652 3.38469 3.41043 4.38276 4.45132 4.59413 4.71801 4.85600 5.06149 5.14338 5.14979 5.20629 5.32830 5.36395 5.40592 5.52912 5.63595 5.72054 5.75238 5.93613 5.94544 6.01362 6.03450 6.19270 6.20469 6.24853 6.32959 6.44814 6.46898 6.50070 6.60498 6.62244 6.88015 7.01465 7.16132 7.42805 7.83759 8.06271 8.20685 8.81965 9.59035 9.97802 11.07692 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013846 B = 0.004112 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.719138 B = 6808.125718 C = 8277.699029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.023 3.977 3 Si 0.880 3.120 4 H -0.292 1.292 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.258 4.258 8 H 0.087 0.913 9 N -0.606 5.606 10 C 0.146 3.854 11 C -0.134 4.134 12 C -0.101 4.101 13 C -0.120 4.120 14 H 0.080 0.920 15 C 0.126 3.874 16 N -0.722 5.722 17 C 0.589 3.411 18 O -0.527 6.527 19 C 0.007 3.993 20 C -0.081 4.081 21 C -0.042 4.042 22 O -0.170 6.170 23 C 0.009 3.991 24 C -0.200 4.200 25 C 0.014 3.986 26 N -0.529 5.529 27 H 0.424 0.576 28 C 0.133 3.867 29 H 0.262 0.738 30 H 0.063 0.937 31 H 0.023 0.977 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.400 0.600 39 H 0.161 0.839 40 H 0.212 0.788 41 H 0.155 0.845 42 H 0.027 0.973 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.102 4.096 -12.562 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.711 3.289 4 H -0.221 1.221 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.386 4.386 8 H 0.105 0.895 9 N -0.329 5.329 10 C 0.020 3.980 11 C -0.174 4.174 12 C -0.139 4.139 13 C -0.141 4.141 14 H 0.099 0.901 15 C 0.003 3.997 16 N -0.373 5.373 17 C 0.375 3.625 18 O -0.404 6.404 19 C -0.106 4.106 20 C -0.109 4.109 21 C -0.094 4.094 22 O -0.067 6.067 23 C -0.059 4.059 24 C -0.221 4.221 25 C -0.100 4.100 26 N -0.133 5.133 27 H 0.263 0.737 28 C 0.007 3.993 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.235 0.765 39 H 0.178 0.822 40 H 0.229 0.771 41 H 0.173 0.827 42 H 0.045 0.955 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.909 4.352 -12.787 14.371 hybrid contribution -0.638 0.614 0.596 1.067 sum 4.271 4.966 -12.191 13.839 Atomic orbital electron populations 1.69837 1.05626 1.26491 1.53016 1.25282 0.95206 0.97357 0.99744 0.87032 0.80216 0.84737 0.76904 1.22059 1.23085 1.19570 1.18972 0.84967 0.94807 1.39880 0.89532 1.44345 1.08731 1.33536 1.46281 1.20967 0.92407 0.91249 0.93390 1.21990 0.99493 0.97508 0.98368 1.21341 0.96914 0.96880 0.98743 1.21997 0.98569 0.96615 0.96922 0.90143 1.21535 0.89895 0.92345 0.95951 1.45978 1.11629 1.35287 1.44385 1.16813 0.87096 0.79544 0.79008 1.90852 1.17643 1.69694 1.62207 1.20309 0.81984 1.03116 1.05148 1.19839 0.94779 0.96277 0.99969 1.19263 0.94654 0.95331 1.00147 1.84013 1.18490 1.48067 1.56174 1.24035 0.82471 0.99903 0.99503 1.20630 0.96228 1.00772 1.04485 1.19049 0.95041 0.95889 0.99972 1.41273 1.05208 1.29337 1.37500 0.73730 1.21374 0.96957 0.91834 0.89085 0.92765 0.91882 0.95925 0.91931 0.92470 0.92611 0.92210 0.91099 0.91177 0.76526 0.82187 0.77135 0.82707 0.95515 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.44 13.97 55.49 0.78 -25.67 16 2 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 3 Si 0.88 21.58 24.34 -169.99 -4.14 17.44 16 4 H -0.29 -6.71 6.62 56.52 0.37 -6.34 16 5 H -0.30 -7.70 7.11 56.52 0.40 -7.29 16 6 H -0.27 -6.68 6.64 56.52 0.38 -6.31 16 7 C -0.26 -6.85 10.03 -15.05 -0.15 -7.00 16 8 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 9 N -0.61 -13.54 2.77 -172.31 -0.48 -14.02 16 10 C 0.15 2.70 6.52 -3.71 -0.02 2.68 16 11 C -0.13 -2.02 6.08 -26.61 -0.16 -2.18 16 12 C -0.10 -1.41 5.17 -26.69 -0.14 -1.55 16 13 C -0.12 -1.89 2.37 -90.50 -0.21 -2.11 16 14 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 15 C 0.13 1.83 5.07 -4.05 -0.02 1.81 16 16 N -0.72 -10.68 5.33 -61.68 -0.33 -11.01 16 17 C 0.59 9.25 7.78 -12.93 -0.10 9.15 16 18 O -0.53 -9.47 16.87 5.17 0.09 -9.39 16 19 C 0.01 0.11 7.03 -81.86 -0.58 -0.47 16 20 C -0.08 -1.15 10.58 -39.11 -0.41 -1.56 16 21 C -0.04 -0.60 8.20 -38.61 -0.32 -0.91 16 22 O -0.17 -2.12 10.68 3.21 0.03 -2.09 16 23 C 0.01 0.08 12.02 29.40 0.35 0.43 16 24 C -0.20 -2.16 10.89 -39.69 -0.43 -2.59 16 25 C 0.01 0.19 8.11 -83.96 -0.68 -0.49 16 26 N -0.53 -7.15 6.08 -7.04 -0.04 -7.19 16 27 H 0.42 5.11 8.16 -40.82 -0.33 4.78 16 28 C 0.13 2.67 3.29 -3.71 -0.01 2.66 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.40 5.69 6.79 -40.82 -0.28 5.41 16 39 H 0.16 2.03 8.06 -52.49 -0.42 1.60 16 40 H 0.21 0.92 8.06 -52.48 -0.42 0.49 16 41 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.03 0.56 7.07 -51.93 -0.37 0.19 16 43 H 0.07 1.45 3.71 -51.93 -0.19 1.25 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -32.59 348.09 -7.67 -40.26 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.84 Total: 8.01 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -2.98 Total: -1.59 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.07 Total: -57.89 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.12 Total: -11.47 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.14 Total: 17.44 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.59 -7.67 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764355720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.983 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds