Wall clock time and date at job start Tue Mar 31 2020 11:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00469 * 2 1 4 4 H 1.48502 * 109.47181 * 272.94988 * 3 2 1 5 5 H 1.48500 * 109.46921 * 32.94632 * 3 2 1 6 6 H 1.48501 * 109.47269 * 152.94819 * 3 2 1 7 7 C 1.38824 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99615 * 339.33846 * 7 2 1 9 9 N 1.36938 * 119.99856 * 159.34103 * 7 2 1 10 10 C 1.46925 * 120.62661 * 152.58068 * 9 7 2 11 11 C 1.53197 * 108.77067 * 126.39356 * 10 9 7 12 12 C 1.53041 * 109.31664 * 54.63204 * 11 10 9 13 13 C 1.53042 * 109.53772 * 298.63574 * 12 11 10 14 14 H 1.08998 * 109.49477 * 301.38088 * 13 12 11 15 15 C 1.52993 * 109.49775 * 181.31417 * 13 12 11 16 16 N 1.46499 * 109.47275 * 175.06161 * 15 13 12 17 17 C 1.34780 * 119.99771 * 179.97438 * 16 15 13 18 18 O 1.21723 * 120.00203 * 0.02562 * 17 16 15 19 19 C 1.46499 * 119.99771 * 179.97438 * 17 16 15 20 20 C 1.37776 * 125.85797 * 179.97438 * 19 17 16 21 21 C 1.39944 * 107.68452 * 180.02562 * 20 19 17 22 22 O 1.35113 * 145.13535 * 180.02562 * 21 20 19 23 23 C 1.34384 * 109.62097 * 179.97438 * 22 21 20 24 24 C 1.34465 * 109.44765 * 359.97438 * 23 22 21 25 25 C 1.39126 * 107.40268 * 0.02562 * 21 20 19 26 26 N 1.37108 * 108.11440 * 359.79450 * 25 21 20 27 27 H 0.97004 * 125.74822 * 180.32540 * 26 25 21 28 28 C 1.46930 * 120.60557 * 332.55897 * 9 7 2 29 29 H 0.97009 * 119.99869 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.58784 * 6.60457 * 10 9 7 31 31 H 1.08998 * 109.70493 * 246.24440 * 10 9 7 32 32 H 1.09008 * 109.49568 * 294.67755 * 11 10 9 33 33 H 1.08999 * 109.49469 * 174.58609 * 11 10 9 34 34 H 1.08997 * 109.45935 * 178.61121 * 12 11 10 35 35 H 1.09000 * 109.44588 * 58.65108 * 12 11 10 36 36 H 1.09005 * 109.47304 * 55.06236 * 15 13 12 37 37 H 1.08999 * 109.47343 * 295.06701 * 15 13 12 38 38 H 0.96997 * 119.99767 * 0.02562 * 16 15 13 39 39 H 1.08000 * 126.15814 * 359.97438 * 20 19 17 40 40 H 1.08003 * 125.27521 * 180.02562 * 23 22 21 41 41 H 1.07998 * 126.41550 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.56311 * 113.80436 * 28 9 7 43 43 H 1.09003 * 109.61770 * 353.38439 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4354 2.0824 -1.3982 5 1 1.4803 2.6338 0.7614 6 1 3.5776 1.4228 0.6367 7 6 2.0102 -1.2023 -0.0005 8 1 1.5222 -2.1076 0.3291 9 7 3.3135 -1.2402 -0.4190 10 6 4.2350 -2.2628 0.0946 11 6 4.8748 -2.9905 -1.0920 12 6 5.5283 -1.9655 -2.0218 13 6 4.4613 -1.0093 -2.5599 14 1 3.6988 -1.5776 -3.0925 15 6 5.1102 -0.0054 -3.5148 16 7 4.0729 0.8338 -4.1199 17 6 4.4131 1.7961 -5.0001 18 8 5.5821 1.9677 -5.2926 19 6 3.3758 2.6348 -5.6056 20 6 3.5862 3.6487 -6.5143 21 6 2.3391 4.1947 -6.8386 22 8 1.6945 5.1274 -7.5734 23 6 0.3727 5.0481 -7.3442 24 6 0.1300 4.0654 -6.4591 25 6 1.3783 3.4971 -6.1135 26 7 2.0183 2.5427 -5.3656 27 1 1.5902 1.9093 -4.7686 28 6 3.8162 -0.2591 -1.3904 29 1 -0.4850 0.8401 -0.0004 30 1 3.6842 -2.9766 0.7071 31 1 5.0120 -1.7893 0.6948 32 1 4.1081 -3.5402 -1.6380 33 1 5.6314 -3.6854 -0.7276 34 1 6.0055 -2.4826 -2.8542 35 1 6.2775 -1.3994 -1.4685 36 1 5.6456 -0.5424 -4.2978 37 1 5.8089 0.6226 -2.9620 38 1 3.1414 0.6972 -3.8864 39 1 4.5417 3.9657 -6.9054 40 1 -0.3782 5.6759 -7.8008 41 1 -0.8369 3.7665 -6.0822 42 1 4.5584 0.3804 -0.9125 43 1 2.9894 0.3488 -1.7577 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764355720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:50 Heat of formation + Delta-G solvation = 21.870319 kcal Electronic energy + Delta-G solvation = -26572.112319 eV Core-core repulsion = 22812.600623 eV Total energy + Delta-G solvation = -3759.511695 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.96661 -41.37049 -40.03497 -39.33128 -36.37538 -34.90079 -33.39730 -32.97142 -32.25527 -31.62817 -29.59246 -27.32539 -27.06561 -24.68430 -23.90636 -22.72914 -22.40787 -21.76475 -21.41284 -20.74084 -19.48896 -18.86086 -18.18499 -17.46320 -17.34247 -17.19741 -16.53253 -16.51927 -15.94824 -15.54466 -15.52158 -15.10637 -14.85383 -14.82988 -14.55395 -14.52534 -14.38202 -13.96490 -13.72164 -13.61526 -13.40223 -13.10911 -12.83762 -12.61638 -12.23283 -12.12883 -11.72639 -11.65591 -11.56326 -11.30069 -11.23428 -11.13443 -10.69654 -10.32379 -9.73039 -8.95607 -8.94839 -8.20690 -5.51111 -0.13193 1.14128 1.17931 1.36428 1.42191 1.42670 1.62780 1.72910 2.12430 2.20424 2.33196 3.00371 3.28806 3.52011 3.64475 3.80425 3.89713 3.90260 3.94725 4.24431 4.29666 4.40718 4.43491 4.47437 4.58013 4.64046 4.70626 4.70905 4.75602 4.85327 4.96553 4.98091 5.07708 5.11953 5.22532 5.28950 5.30268 5.38428 5.49168 5.58188 5.84226 6.06392 6.10006 6.15984 6.30126 6.87158 6.88904 7.59320 8.00579 8.99007 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013846 B = 0.004112 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.719138 B = 6808.125718 C = 8277.699029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.025 4.025 3 Si 0.937 3.063 4 H -0.271 1.271 5 H -0.316 1.316 6 H -0.272 1.272 7 C -0.246 4.246 8 H 0.055 0.945 9 N -0.620 5.620 10 C 0.136 3.864 11 C -0.125 4.125 12 C -0.099 4.099 13 C -0.107 4.107 14 H 0.076 0.924 15 C 0.131 3.869 16 N -0.721 5.721 17 C 0.593 3.407 18 O -0.555 6.555 19 C -0.015 4.015 20 C -0.082 4.082 21 C -0.071 4.071 22 O -0.180 6.180 23 C 0.036 3.964 24 C -0.224 4.224 25 C 0.007 3.993 26 N -0.529 5.529 27 H 0.427 0.573 28 C 0.130 3.870 29 H 0.261 0.739 30 H 0.053 0.947 31 H 0.031 0.969 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.402 0.598 39 H 0.167 0.833 40 H 0.263 0.737 41 H 0.176 0.824 42 H 0.024 0.976 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.127 4.585 -14.058 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.220 4.220 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.246 1.246 6 H -0.197 1.197 7 C -0.376 4.376 8 H 0.073 0.927 9 N -0.344 5.344 10 C 0.012 3.988 11 C -0.163 4.163 12 C -0.137 4.137 13 C -0.127 4.127 14 H 0.094 0.906 15 C 0.007 3.993 16 N -0.371 5.371 17 C 0.380 3.620 18 O -0.434 6.434 19 C -0.127 4.127 20 C -0.110 4.110 21 C -0.122 4.122 22 O -0.079 6.079 23 C -0.031 4.031 24 C -0.245 4.245 25 C -0.107 4.107 26 N -0.133 5.133 27 H 0.267 0.733 28 C 0.005 3.995 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.237 0.763 39 H 0.185 0.815 40 H 0.279 0.721 41 H 0.193 0.807 42 H 0.041 0.959 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.979 4.810 -14.289 16.220 hybrid contribution -1.040 0.434 1.053 1.542 sum 4.940 5.245 -13.237 15.071 Atomic orbital electron populations 1.69946 1.07081 1.27023 1.55662 1.25751 0.95641 1.00029 1.00613 0.86099 0.78461 0.81032 0.77701 1.19801 1.24556 1.19693 1.18917 0.86766 0.93573 1.38301 0.92721 1.44495 1.07870 1.34783 1.47282 1.21192 0.91938 0.90514 0.95177 1.21889 0.99882 0.97768 0.96802 1.21381 0.96284 0.96374 0.99624 1.21816 0.98985 0.96687 0.95227 0.90558 1.21530 0.89629 0.92017 0.96090 1.45998 1.11860 1.35141 1.44100 1.16883 0.86911 0.79445 0.78741 1.90826 1.18672 1.70579 1.63274 1.20159 0.82306 1.03904 1.06318 1.20026 0.95434 0.96009 0.99559 1.19389 0.94872 0.96536 1.01439 1.84026 1.19941 1.47763 1.56130 1.25098 0.81756 0.98786 0.97451 1.21043 0.96187 1.01575 1.05672 1.19624 0.96306 0.95426 0.99361 1.41251 1.04922 1.29534 1.37635 0.73295 1.21391 0.96385 0.91705 0.90050 0.92938 0.92860 0.95053 0.92784 0.89250 0.89473 0.91438 0.89282 0.91411 0.76304 0.81501 0.72098 0.80669 0.95855 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.03 13.97 21.65 0.30 -56.73 16 2 C -0.03 -1.41 5.23 84.87 0.44 -0.96 16 3 Si 0.94 45.24 24.34 68.60 1.67 46.91 16 4 H -0.27 -11.99 6.62 99.48 0.66 -11.33 16 5 H -0.32 -15.88 7.11 99.48 0.71 -15.17 16 6 H -0.27 -13.02 6.64 99.48 0.66 -12.36 16 7 C -0.25 -13.33 10.03 84.04 0.84 -12.49 16 8 H 0.06 3.26 8.06 -2.91 -0.02 3.23 16 9 N -0.62 -27.48 2.77 -699.08 -1.94 -29.41 16 10 C 0.14 4.89 6.52 86.36 0.56 5.45 16 11 C -0.12 -3.38 6.08 30.67 0.19 -3.19 16 12 C -0.10 -2.42 5.17 30.62 0.16 -2.26 16 13 C -0.11 -3.13 2.37 -10.72 -0.03 -3.16 16 14 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 15 C 0.13 3.51 5.07 86.38 0.44 3.95 16 16 N -0.72 -20.58 5.33 -467.25 -2.49 -23.07 16 17 C 0.59 18.30 7.78 86.40 0.67 18.97 16 18 O -0.55 -19.61 16.87 -4.42 -0.07 -19.69 16 19 C -0.01 -0.43 7.03 40.19 0.28 -0.14 16 20 C -0.08 -2.33 10.58 22.57 0.24 -2.09 16 21 C -0.07 -1.96 8.20 22.90 0.19 -1.77 16 22 O -0.18 -4.18 10.68 -11.43 -0.12 -4.30 16 23 C 0.04 0.55 12.02 66.96 0.80 1.36 16 24 C -0.22 -4.33 10.89 22.20 0.24 -4.09 16 25 C 0.01 0.19 8.11 39.32 0.32 0.51 16 26 N -0.53 -14.13 6.08 -176.19 -1.07 -15.20 16 27 H 0.43 10.27 8.16 -92.71 -0.76 9.51 16 28 C 0.13 5.05 3.29 86.36 0.28 5.33 16 29 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 30 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.40 11.18 6.79 -92.71 -0.63 10.55 16 39 H 0.17 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.26 0.95 8.06 -2.91 -0.02 0.93 16 41 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.02 0.94 7.07 -2.39 -0.02 0.92 16 43 H 0.05 2.09 3.71 -2.39 -0.01 2.09 16 Total: -1.00 -72.29 348.09 1.49 -70.80 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -0.42 Total: 25.29 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 5.64 Total: 5.41 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -5.19 Total: -124.41 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.20 Total: -23.99 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.67 Total: 46.91 kcal Total: -72.29 1.49 -70.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764355720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.667 kcal (2) G-P(sol) polarization free energy of solvation -72.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds