Wall clock time and date at job start Tue Mar 31 2020 11:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38295 * 119.92056 * 2 1 4 4 C 1.38098 * 120.06975 * 179.97438 * 3 2 1 5 5 C 1.38922 * 119.92813 * 0.23319 * 4 3 2 6 6 N 1.39733 * 120.07836 * 179.72231 * 5 4 3 7 7 C 1.34770 * 119.99760 * 33.33938 * 6 5 4 8 8 O 1.21395 * 120.00350 * 5.27245 * 7 6 5 9 9 C 1.49193 * 120.00217 * 185.27740 * 7 6 5 10 10 O 1.21416 * 119.99447 * 359.97438 * 9 7 6 11 11 N 1.34770 * 120.00217 * 180.02562 * 9 7 6 12 12 N 1.40097 * 119.99853 * 179.97438 * 11 9 7 13 13 C 1.28027 * 120.00282 * 179.97438 * 12 11 9 14 14 C 1.50696 * 120.00257 * 179.97438 * 13 12 11 15 15 H 1.08993 * 109.47381 * 0.02562 * 14 13 12 16 16 C 1.53002 * 109.47227 * 240.00005 * 14 13 12 17 17 C 1.53001 * 109.47022 * 120.00312 * 14 13 12 18 18 C 1.50695 * 109.47294 * 185.00116 * 17 14 13 19 19 H 1.08008 * 120.00023 * 359.97438 * 18 17 14 20 20 C 1.37879 * 120.00292 * 179.97438 * 18 17 14 21 21 N 1.31513 * 119.99945 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99963 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47543 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47077 * 120.00575 * 22 20 18 25 25 H 1.48498 * 109.47127 * 240.00231 * 22 20 18 26 26 C 1.38934 * 119.84698 * 359.51475 * 5 4 3 27 27 C 1.38094 * 119.92217 * 0.48751 * 26 5 4 28 28 H 1.09002 * 109.46786 * 89.99560 * 1 2 3 29 29 H 1.08999 * 109.47022 * 209.99845 * 1 2 3 30 30 H 1.08997 * 109.46745 * 330.00326 * 1 2 3 31 31 H 1.07989 * 119.96416 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.03716 * 179.97438 * 4 3 2 33 33 H 0.96997 * 119.99899 * 213.33391 * 6 5 4 34 34 H 0.97002 * 119.99973 * 359.97438 * 11 9 7 35 35 H 1.08004 * 119.99357 * 0.02562 * 13 12 11 36 36 H 1.08996 * 109.47205 * 59.99974 * 16 14 13 37 37 H 1.09002 * 109.47169 * 180.02562 * 16 14 13 38 38 H 1.09003 * 109.47033 * 300.00454 * 16 14 13 39 39 H 1.09004 * 109.47020 * 304.99924 * 17 14 13 40 40 H 1.08994 * 109.47678 * 64.99891 * 17 14 13 41 41 H 0.96997 * 119.99991 * 179.97438 * 21 20 18 42 42 H 1.07996 * 120.03895 * 180.20488 * 26 5 4 43 43 H 1.07998 * 119.96005 * 179.74645 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5778 1.2022 0.0005 5 6 4.2741 0.0001 -0.0038 6 7 5.6714 0.0001 -0.0092 7 6 6.3477 0.9742 0.6311 8 8 5.7471 1.7967 1.2919 9 6 7.8345 1.0421 0.5278 10 8 8.4352 0.2193 -0.1327 11 7 8.5108 2.0159 1.1685 12 7 9.9070 2.0792 1.0719 13 6 10.5495 3.0046 1.6801 14 6 12.0513 3.0724 1.5767 15 1 12.4093 2.2580 0.9469 16 6 12.6650 2.9459 2.9725 17 6 12.4601 4.4113 0.9594 18 6 13.9513 4.4301 0.7425 19 1 14.5479 3.5729 1.0179 20 6 14.5540 5.5416 0.1926 21 7 13.8277 6.5855 -0.1423 22 14 16.4026 5.5650 -0.0755 23 1 16.9855 4.2781 0.3816 24 1 16.6909 5.7532 -1.5201 25 1 17.0008 6.6825 0.6982 26 6 3.5779 -1.2022 0.0015 27 6 2.1969 -1.1986 0.0009 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6550 2.1328 -0.0004 32 1 4.1160 2.1386 0.0001 33 1 6.1546 -0.7011 -0.4736 34 1 8.0308 2.6730 1.6966 35 1 10.0151 3.7362 2.2680 36 1 12.3737 1.9921 3.4124 37 1 13.7513 2.9954 2.8978 38 1 12.3069 3.7606 3.6020 39 1 11.9523 4.5408 0.0036 40 1 12.1806 5.2221 1.6320 41 1 14.2518 7.3676 -0.5288 42 1 4.1160 -2.1386 0.0015 43 1 1.6551 -2.1328 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766003474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:24 Heat of formation + Delta-G solvation = -12.786015 kcal Electronic energy + Delta-G solvation = -24329.762951 eV Core-core repulsion = 20568.748444 eV Total energy + Delta-G solvation = -3761.014507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30974 -39.67307 -38.50025 -37.16525 -35.73063 -34.79758 -32.50953 -31.96601 -31.33279 -30.91731 -27.40245 -27.01767 -25.22420 -23.94509 -23.36435 -22.07943 -21.35035 -20.59122 -19.64066 -18.64753 -17.95886 -16.97413 -16.74758 -16.31284 -16.11827 -15.77225 -15.30286 -14.73602 -14.56435 -14.30766 -14.12875 -14.07096 -13.76926 -13.47646 -13.20850 -12.88105 -12.72595 -12.52889 -12.22979 -12.04378 -11.73722 -11.66913 -11.46477 -11.22342 -10.95152 -10.81860 -10.66269 -10.46437 -10.19340 -9.94331 -9.79511 -9.60097 -9.29465 -9.12536 -8.70623 -8.42705 -8.40634 -6.05174 -4.07330 0.62600 1.04270 1.25974 1.79362 2.30224 3.07259 3.08805 3.29832 3.37974 3.41586 3.42618 4.02395 4.42943 4.45293 4.52059 4.64782 4.88709 5.01594 5.05080 5.11031 5.19911 5.22680 5.31741 5.33894 5.52148 5.64430 5.84708 5.87859 5.89723 5.97091 6.04756 6.06704 6.24896 6.34913 6.55393 6.66608 6.70619 6.87238 6.90244 6.96277 7.21335 7.49453 7.56586 7.67026 7.92597 8.30253 8.34829 8.98012 9.56861 11.06275 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033363 B = 0.001799 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.047972 B =15559.267743 C =15798.427615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.100 4.100 4 C -0.115 4.115 5 C 0.137 3.863 6 N -0.643 5.643 7 C 0.516 3.484 8 O -0.498 6.498 9 C 0.527 3.473 10 O -0.486 6.486 11 N -0.562 5.562 12 N -0.261 5.261 13 C 0.123 3.877 14 C -0.043 4.043 15 H 0.082 0.918 16 C -0.128 4.128 17 C 0.032 3.968 18 C -0.516 4.516 19 H 0.061 0.939 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.893 3.107 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.284 1.284 26 C -0.135 4.135 27 C -0.102 4.102 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.127 0.873 32 H 0.136 0.864 33 H 0.425 0.575 34 H 0.392 0.608 35 H 0.107 0.893 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.019 0.981 40 H 0.022 0.978 41 H 0.260 0.740 42 H 0.129 0.871 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.936 -13.492 2.467 28.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.119 4.119 4 C -0.134 4.134 5 C 0.043 3.957 6 N -0.290 5.290 7 C 0.297 3.703 8 O -0.372 6.372 9 C 0.306 3.694 10 O -0.358 6.358 11 N -0.304 5.304 12 N -0.063 5.063 13 C -0.091 4.091 14 C -0.064 4.064 15 H 0.101 0.899 16 C -0.187 4.187 17 C -0.006 4.006 18 C -0.555 4.555 19 H 0.079 0.921 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.721 3.279 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.155 4.155 27 C -0.120 4.120 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.145 0.855 32 H 0.154 0.846 33 H 0.263 0.737 34 H 0.231 0.769 35 H 0.124 0.876 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.147 0.853 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.941 -14.123 1.800 28.719 hybrid contribution 0.741 0.915 0.334 1.224 sum -24.200 -13.207 2.134 27.652 Atomic orbital electron populations 1.20779 0.91008 1.02843 1.02350 1.19973 0.96306 0.93104 1.00680 1.20942 0.93365 0.97855 0.99727 1.21178 0.94379 0.97505 1.00386 1.17717 0.81496 0.94563 1.01918 1.43092 1.05040 1.28654 1.52251 1.20152 0.88369 0.82020 0.79767 1.90801 1.69849 1.38681 1.37838 1.19399 0.86836 0.82141 0.80990 1.90804 1.69288 1.38053 1.37667 1.46674 1.04410 1.30041 1.49252 1.74748 0.87783 1.23144 1.20596 1.26964 0.99326 0.91437 0.91403 1.20461 0.84090 1.03375 0.98460 0.89942 1.21682 1.02522 0.99544 0.94911 1.19148 0.96739 0.88858 0.95828 1.21188 0.92201 1.00981 1.41085 0.92100 1.25009 0.98230 0.95653 0.95521 1.69966 1.35383 1.05159 1.42876 0.86517 0.85512 0.78033 0.77838 1.19621 1.21072 1.21058 1.20917 0.94586 0.96406 1.03589 1.20830 0.93153 0.97807 1.00235 0.91147 0.91541 0.91484 0.85494 0.84639 0.73689 0.76852 0.87567 0.94487 0.90545 0.93001 0.96230 0.95925 0.92992 0.85299 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.01 36.01 0.36 -0.21 16 2 C -0.10 -0.75 5.88 -104.58 -0.62 -1.37 16 3 C -0.10 -0.86 9.69 -39.61 -0.38 -1.24 16 4 C -0.11 -1.19 8.65 -39.38 -0.34 -1.53 16 5 C 0.14 1.37 6.28 -83.75 -0.53 0.84 16 6 N -0.64 -6.60 5.32 -10.34 -0.06 -6.65 16 7 C 0.52 6.47 7.62 -11.71 -0.09 6.38 16 8 O -0.50 -6.85 14.16 5.46 0.08 -6.77 16 9 C 0.53 7.82 8.00 -11.71 -0.09 7.72 16 10 O -0.49 -8.40 16.82 5.44 0.09 -8.31 16 11 N -0.56 -8.52 6.24 30.85 0.19 -8.33 16 12 N -0.26 -4.66 10.93 32.68 0.36 -4.30 16 13 C 0.12 2.07 9.66 -13.87 -0.13 1.93 16 14 C -0.04 -0.82 2.75 -91.77 -0.25 -1.07 16 15 H 0.08 1.68 8.11 -51.93 -0.42 1.26 16 16 C -0.13 -2.15 8.99 37.16 0.33 -1.82 16 17 C 0.03 0.78 4.43 -27.88 -0.12 0.66 16 18 C -0.52 -13.72 8.41 -34.44 -0.29 -14.01 16 19 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 20 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 21 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 22 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C -0.13 -1.08 9.97 -39.38 -0.39 -1.47 16 27 C -0.10 -0.73 9.69 -39.61 -0.38 -1.12 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 30 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.14 1.54 6.41 -52.49 -0.34 1.20 16 33 H 0.42 3.64 8.29 -40.82 -0.34 3.30 16 34 H 0.39 4.99 8.10 -182.60 -1.48 3.52 16 35 H 0.11 1.50 8.00 -52.48 -0.42 1.08 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 1.37 6.95 -51.93 -0.36 1.01 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -32.39 375.36 -8.07 -40.47 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.08 Total: 2.33 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -3.03 Total: -4.83 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 1.23 Total: -44.56 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.17 Total: -15.08 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.39 -8.07 -40.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766003474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.680 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds