Wall clock time and date at job start Tue Mar 31 2020 11:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38295 * 119.92056 * 2 1 4 4 C 1.38098 * 120.06975 * 179.97438 * 3 2 1 5 5 C 1.38922 * 119.92813 * 0.23319 * 4 3 2 6 6 N 1.39733 * 120.07836 * 179.72231 * 5 4 3 7 7 C 1.34770 * 119.99760 * 33.33938 * 6 5 4 8 8 O 1.21395 * 120.00350 * 5.27245 * 7 6 5 9 9 C 1.49193 * 120.00217 * 185.27740 * 7 6 5 10 10 O 1.21416 * 119.99447 * 359.97438 * 9 7 6 11 11 N 1.34770 * 120.00217 * 180.02562 * 9 7 6 12 12 N 1.40097 * 119.99853 * 179.97438 * 11 9 7 13 13 C 1.28027 * 120.00282 * 179.97438 * 12 11 9 14 14 C 1.50696 * 120.00257 * 179.97438 * 13 12 11 15 15 H 1.08993 * 109.47381 * 0.02562 * 14 13 12 16 16 C 1.53002 * 109.47227 * 240.00005 * 14 13 12 17 17 C 1.53001 * 109.47022 * 120.00312 * 14 13 12 18 18 C 1.50695 * 109.47294 * 185.00116 * 17 14 13 19 19 H 1.08008 * 120.00023 * 359.97438 * 18 17 14 20 20 C 1.37879 * 120.00292 * 179.97438 * 18 17 14 21 21 N 1.31513 * 119.99945 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99963 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47543 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47077 * 120.00575 * 22 20 18 25 25 H 1.48498 * 109.47127 * 240.00231 * 22 20 18 26 26 C 1.38934 * 119.84698 * 359.51475 * 5 4 3 27 27 C 1.38094 * 119.92217 * 0.48751 * 26 5 4 28 28 H 1.09002 * 109.46786 * 89.99560 * 1 2 3 29 29 H 1.08999 * 109.47022 * 209.99845 * 1 2 3 30 30 H 1.08997 * 109.46745 * 330.00326 * 1 2 3 31 31 H 1.07989 * 119.96416 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.03716 * 179.97438 * 4 3 2 33 33 H 0.96997 * 119.99899 * 213.33391 * 6 5 4 34 34 H 0.97002 * 119.99973 * 359.97438 * 11 9 7 35 35 H 1.08004 * 119.99357 * 0.02562 * 13 12 11 36 36 H 1.08996 * 109.47205 * 59.99974 * 16 14 13 37 37 H 1.09002 * 109.47169 * 180.02562 * 16 14 13 38 38 H 1.09003 * 109.47033 * 300.00454 * 16 14 13 39 39 H 1.09004 * 109.47020 * 304.99924 * 17 14 13 40 40 H 1.08994 * 109.47678 * 64.99891 * 17 14 13 41 41 H 0.96997 * 119.99991 * 179.97438 * 21 20 18 42 42 H 1.07996 * 120.03895 * 180.20488 * 26 5 4 43 43 H 1.07998 * 119.96005 * 179.74645 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5778 1.2022 0.0005 5 6 4.2741 0.0001 -0.0038 6 7 5.6714 0.0001 -0.0092 7 6 6.3477 0.9742 0.6311 8 8 5.7471 1.7967 1.2919 9 6 7.8345 1.0421 0.5278 10 8 8.4352 0.2193 -0.1327 11 7 8.5108 2.0159 1.1685 12 7 9.9070 2.0792 1.0719 13 6 10.5495 3.0046 1.6801 14 6 12.0513 3.0724 1.5767 15 1 12.4093 2.2580 0.9469 16 6 12.6650 2.9459 2.9725 17 6 12.4601 4.4113 0.9594 18 6 13.9513 4.4301 0.7425 19 1 14.5479 3.5729 1.0179 20 6 14.5540 5.5416 0.1926 21 7 13.8277 6.5855 -0.1423 22 14 16.4026 5.5650 -0.0755 23 1 16.9855 4.2781 0.3816 24 1 16.6909 5.7532 -1.5201 25 1 17.0008 6.6825 0.6982 26 6 3.5779 -1.2022 0.0015 27 6 2.1969 -1.1986 0.0009 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6550 2.1328 -0.0004 32 1 4.1160 2.1386 0.0001 33 1 6.1546 -0.7011 -0.4736 34 1 8.0308 2.6730 1.6966 35 1 10.0151 3.7362 2.2680 36 1 12.3737 1.9921 3.4124 37 1 13.7513 2.9954 2.8978 38 1 12.3069 3.7606 3.6020 39 1 11.9523 4.5408 0.0036 40 1 12.1806 5.2221 1.6320 41 1 14.2518 7.3676 -0.5288 42 1 4.1160 -2.1386 0.0015 43 1 1.6551 -2.1328 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766003474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:23 Heat of formation + Delta-G solvation = -33.449959 kcal Electronic energy + Delta-G solvation = -24330.659006 eV Core-core repulsion = 20568.748444 eV Total energy + Delta-G solvation = -3761.910563 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.28241 -40.61379 -39.45871 -38.56091 -36.77703 -36.16525 -34.38168 -32.61196 -32.39129 -31.94817 -28.91086 -28.09530 -26.36710 -25.41774 -24.10251 -23.39194 -22.31128 -21.64854 -20.91939 -19.85564 -19.03603 -18.38016 -17.99531 -17.68322 -17.31656 -16.50010 -16.39974 -16.17294 -15.77987 -15.27507 -15.04913 -14.87551 -14.75925 -14.61728 -14.49857 -14.38195 -13.78789 -13.36307 -13.27079 -13.16524 -12.97857 -12.86000 -12.73254 -12.53707 -12.44294 -12.22402 -12.07608 -11.82776 -11.45223 -11.36496 -11.34529 -11.10811 -10.87587 -10.52056 -10.08803 -9.93779 -9.12092 -8.15835 -6.24167 -0.30605 0.37090 0.40841 0.70984 1.04972 1.43809 1.45730 1.57608 1.94287 2.07731 2.45663 2.76383 2.99211 3.19395 3.73829 3.87346 3.91791 3.97771 4.06726 4.34938 4.40416 4.41286 4.44074 4.54539 4.58963 4.80926 4.89046 4.93204 5.02582 5.07557 5.19615 5.20778 5.26732 5.30759 5.37869 5.48671 5.53544 5.59834 5.66546 5.69748 5.86345 5.89055 6.00281 6.14181 6.27281 6.53582 6.90713 7.07735 7.44199 8.96301 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033363 B = 0.001799 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.047972 B =15559.267743 C =15798.427615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.111 4.111 4 C -0.134 4.134 5 C 0.111 3.889 6 N -0.628 5.628 7 C 0.525 3.475 8 O -0.513 6.513 9 C 0.528 3.472 10 O -0.514 6.514 11 N -0.557 5.557 12 N -0.287 5.287 13 C 0.126 3.874 14 C -0.034 4.034 15 H 0.067 0.933 16 C -0.121 4.121 17 C 0.038 3.962 18 C -0.527 4.527 19 H 0.067 0.933 20 C 0.000 4.000 21 N -0.934 5.934 22 Si 0.960 3.040 23 H -0.260 1.260 24 H -0.286 1.286 25 H -0.279 1.279 26 C -0.132 4.132 27 C -0.103 4.103 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.139 0.861 32 H 0.118 0.882 33 H 0.432 0.568 34 H 0.405 0.595 35 H 0.136 0.864 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.063 0.937 39 H -0.014 1.014 40 H 0.011 0.989 41 H 0.261 0.739 42 H 0.150 0.850 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.214 -15.125 3.200 30.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.130 4.130 4 C -0.154 4.154 5 C 0.018 3.982 6 N -0.276 5.276 7 C 0.305 3.695 8 O -0.388 6.388 9 C 0.309 3.691 10 O -0.387 6.387 11 N -0.300 5.300 12 N -0.089 5.089 13 C -0.087 4.087 14 C -0.056 4.056 15 H 0.086 0.914 16 C -0.180 4.180 17 C 0.000 4.000 18 C -0.565 4.565 19 H 0.085 0.915 20 C -0.197 4.197 21 N -0.575 5.575 22 Si 0.785 3.215 23 H -0.184 1.184 24 H -0.212 1.212 25 H -0.205 1.205 26 C -0.152 4.152 27 C -0.122 4.122 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.157 0.843 32 H 0.136 0.864 33 H 0.272 0.728 34 H 0.246 0.754 35 H 0.153 0.847 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.004 0.996 40 H 0.030 0.970 41 H 0.070 0.930 42 H 0.168 0.832 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -26.238 -15.779 2.540 30.722 hybrid contribution 0.988 1.366 0.069 1.687 sum -25.250 -14.413 2.609 29.191 Atomic orbital electron populations 1.20840 0.89048 1.03786 1.03233 1.20346 0.97803 0.92752 0.99082 1.21152 0.92785 0.99162 0.99855 1.21190 0.95333 0.97107 1.01802 1.17926 0.81006 0.95388 1.03875 1.42992 1.05441 1.27884 1.51252 1.19654 0.87055 0.82607 0.80219 1.90800 1.69598 1.39508 1.38917 1.19854 0.87798 0.81385 0.80098 1.90783 1.70130 1.39027 1.38797 1.46575 1.03458 1.30528 1.49462 1.74612 0.89502 1.24009 1.20796 1.26756 0.98127 0.92084 0.91754 1.20179 0.86155 0.99824 0.99404 0.91446 1.21610 1.01440 1.01452 0.93471 1.18983 0.95441 0.91314 0.94254 1.21628 0.93646 1.00981 1.40282 0.91451 1.25890 1.02937 0.95422 0.95471 1.70092 1.37350 1.05894 1.44117 0.85465 0.79978 0.78523 0.77487 1.18368 1.21195 1.20490 1.21203 0.95169 0.96388 1.02391 1.21224 0.92940 0.98915 0.99071 0.90168 0.90183 0.91036 0.84327 0.86419 0.72828 0.75380 0.84659 0.91942 0.91860 0.91843 0.99582 0.97032 0.92974 0.83211 0.82680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 71.24 0.71 -0.11 16 2 C -0.10 -1.28 5.88 -19.84 -0.12 -1.40 16 3 C -0.11 -1.82 9.69 22.25 0.22 -1.60 16 4 C -0.13 -2.80 8.65 22.40 0.19 -2.61 16 5 C 0.11 2.15 6.28 38.21 0.24 2.39 16 6 N -0.63 -12.72 5.32 -304.98 -1.62 -14.34 16 7 C 0.52 13.18 7.62 87.19 0.66 13.84 16 8 O -0.51 -14.22 14.16 -3.39 -0.05 -14.26 16 9 C 0.53 15.72 8.00 87.19 0.70 16.42 16 10 O -0.51 -17.90 16.82 -3.45 -0.06 -17.95 16 11 N -0.56 -16.77 6.24 -174.66 -1.09 -17.86 16 12 N -0.29 -10.19 10.93 -50.46 -0.55 -10.74 16 13 C 0.13 4.19 9.66 88.66 0.86 5.05 16 14 C -0.03 -1.32 2.75 -11.54 -0.03 -1.35 16 15 H 0.07 2.77 8.11 -2.39 -0.02 2.75 16 16 C -0.12 -3.92 8.99 71.98 0.65 -3.27 16 17 C 0.04 1.88 4.43 29.85 0.13 2.02 16 18 C -0.53 -28.30 8.41 25.60 0.22 -28.08 16 19 H 0.07 3.45 7.06 -2.91 -0.02 3.43 16 20 C 0.00 0.02 5.46 84.66 0.46 0.48 16 21 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 22 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 26 C -0.13 -1.86 9.97 22.40 0.22 -1.64 16 27 C -0.10 -1.22 9.69 22.25 0.22 -1.00 16 28 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.08 0.39 8.08 -2.39 -0.02 0.37 16 30 H 0.07 0.48 8.08 -2.39 -0.02 0.46 16 31 H 0.14 1.80 8.06 -2.92 -0.02 1.77 16 32 H 0.12 2.81 6.41 -2.91 -0.02 2.79 16 33 H 0.43 7.23 8.29 -92.71 -0.77 6.46 16 34 H 0.41 10.11 8.10 -213.32 -1.73 8.39 16 35 H 0.14 3.64 8.00 -2.91 -0.02 3.61 16 36 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 2.20 6.95 -2.39 -0.02 2.18 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 40 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 42 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 43 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -70.57 375.36 2.82 -67.75 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -1.45 Total: 18.01 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 5.33 Total: -0.87 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -2.98 Total: -98.00 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.11 Total: -32.22 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -70.57 2.82 -67.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766003474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.304 kcal (2) G-P(sol) polarization free energy of solvation -70.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds