Wall clock time and date at job start Tue Mar 31 2020 11:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34504 * 125.79227 * 2 1 4 4 C 1.41386 * 106.84211 * 180.02562 * 3 2 1 5 5 C 1.34507 * 106.83773 * 0.02562 * 4 3 2 6 6 C 1.50709 * 125.78764 * 180.02562 * 5 4 3 7 7 H 1.08990 * 109.46910 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.47147 * 119.99783 * 6 5 4 9 9 C 1.50704 * 109.46659 * 239.99504 * 6 5 4 10 10 O 1.21291 * 120.00259 * 0.02562 * 9 6 5 11 11 N 1.34779 * 119.99258 * 179.97438 * 9 6 5 12 12 C 1.40162 * 119.99437 * 180.02562 * 11 9 6 13 13 C 1.40415 * 125.97631 * 0.31570 * 12 11 9 14 14 C 1.35232 * 107.86655 * 180.13084 * 13 12 11 15 15 C 1.50703 * 126.06766 * 179.84998 * 14 13 12 16 16 N 1.34968 * 107.86163 * 359.58679 * 14 13 12 17 17 C 1.46509 * 125.97450 * 180.23081 * 16 14 13 18 18 C 1.50698 * 109.47025 * 89.99735 * 17 16 14 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99698 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00426 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46895 * 89.99951 * 22 20 18 24 24 H 1.48496 * 109.46922 * 209.99736 * 22 20 18 25 25 H 1.48503 * 109.46783 * 329.99868 * 22 20 18 26 26 N 1.31221 * 125.97269 * 179.97438 * 12 11 9 27 27 O 1.34302 * 108.42339 * 0.26188 * 5 4 3 28 28 H 1.08998 * 109.47008 * 89.99206 * 1 2 3 29 29 H 1.08994 * 109.47030 * 209.99854 * 1 2 3 30 30 H 1.08995 * 109.46593 * 329.99495 * 1 2 3 31 31 H 1.08000 * 126.58184 * 0.02562 * 3 2 1 32 32 H 1.07994 * 126.58097 * 180.02562 * 4 3 2 33 33 H 1.08994 * 109.47377 * 179.97438 * 8 6 5 34 34 H 1.09001 * 109.47039 * 300.00083 * 8 6 5 35 35 H 1.09003 * 109.47029 * 60.00039 * 8 6 5 36 36 H 0.96991 * 120.00480 * 0.02562 * 11 9 6 37 37 H 1.07995 * 126.06342 * 0.02562 * 13 12 11 38 38 H 1.09002 * 109.47152 * 269.68932 * 15 14 13 39 39 H 1.09001 * 109.46980 * 149.69032 * 15 14 13 40 40 H 1.09004 * 109.47113 * 29.69013 * 15 14 13 41 41 H 1.08994 * 109.46750 * 210.00045 * 17 16 14 42 42 H 1.09004 * 109.46474 * 329.99737 * 17 16 14 43 43 H 0.96998 * 119.99850 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6310 0.6319 -0.0006 5 6 3.5814 -0.7123 -0.0015 6 6 4.7706 -1.6381 -0.0019 7 1 5.6885 -1.0504 -0.0017 8 6 4.7297 -2.5213 1.2468 9 6 4.7307 -2.5064 -1.2329 10 8 3.8260 -2.3852 -2.0316 11 7 5.7010 -3.4171 -1.4468 12 6 5.6642 -4.2244 -2.5920 13 6 4.6841 -4.1865 -3.5968 14 6 5.0034 -5.1186 -4.5231 15 6 4.2251 -5.4271 -5.7762 16 7 6.1459 -5.7194 -4.1291 17 6 6.8476 -6.7878 -4.8451 18 6 7.8439 -6.1823 -5.8001 19 1 7.9446 -5.1091 -5.8667 20 6 8.6274 -6.9986 -6.5879 21 7 9.4966 -6.4702 -7.4217 22 14 8.4537 -8.8549 -6.4722 23 1 7.4303 -9.3178 -7.4436 24 1 9.7571 -9.4944 -6.7840 25 1 8.0355 -9.2280 -5.0970 26 7 6.5431 -5.1434 -2.9157 27 8 2.2924 -1.0895 -0.0073 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8899 0.5139 31 1 1.9667 2.1203 0.0004 32 1 4.5213 1.2431 -0.0004 33 1 5.5895 -3.1911 1.2463 34 1 4.7585 -1.8932 2.1372 35 1 3.8117 -3.1090 1.2462 36 1 6.4247 -3.5138 -0.8083 37 1 3.8266 -3.5306 -3.6240 38 1 3.4908 -6.2047 -5.5657 39 1 4.9080 -5.7727 -6.5522 40 1 3.7134 -4.5269 -6.1170 41 1 7.3698 -7.4226 -4.1294 42 1 6.1267 -7.3857 -5.4028 43 1 10.0476 -7.0445 -7.9763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767933363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:00 Heat of formation + Delta-G solvation = 54.731285 kcal Electronic energy + Delta-G solvation = -25771.622162 eV Core-core repulsion = 22013.535425 eV Total energy + Delta-G solvation = -3758.086737 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.73559 -40.83041 -39.45125 -34.93665 -34.59580 -33.27129 -33.25630 -31.67479 -31.22438 -30.98070 -27.22835 -26.72991 -26.42098 -24.59670 -22.63275 -21.92275 -21.49052 -20.18132 -19.83709 -19.14843 -17.13684 -17.09019 -16.73699 -16.09922 -16.03592 -15.44393 -15.32745 -14.63467 -14.58683 -14.09257 -13.86877 -13.58629 -13.35161 -13.25489 -13.12005 -12.89773 -12.67870 -12.58730 -12.43296 -12.32194 -12.24659 -11.97992 -11.87384 -11.76107 -11.56556 -11.18134 -10.82093 -10.57966 -10.02392 -9.97153 -9.95161 -9.61924 -9.57930 -8.79963 -8.40839 -8.02132 -7.51181 -6.27713 -4.31070 1.56420 2.23405 2.41826 2.69554 2.80337 2.81927 3.13646 3.21972 3.22669 3.63726 3.73472 4.20221 4.21017 4.49689 4.64467 4.68534 4.86405 4.94412 5.00285 5.15874 5.23011 5.28919 5.33574 5.41461 5.46868 5.61644 5.68710 5.73744 5.84514 5.86058 6.00876 6.01587 6.17455 6.35169 6.40858 6.43711 6.52903 6.58353 6.73222 7.08736 7.27235 7.35770 7.54435 7.83724 8.17625 8.29810 8.54724 8.77858 9.27337 10.84752 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027342 B = 0.002568 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.812032 B =10901.797128 C =11262.619607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.010 4.010 3 C -0.215 4.215 4 C -0.201 4.201 5 C 0.011 3.989 6 C -0.023 4.023 7 H 0.129 0.871 8 C -0.147 4.147 9 C 0.520 3.480 10 O -0.501 6.501 11 N -0.629 5.629 12 C 0.267 3.733 13 C -0.287 4.287 14 C 0.095 3.905 15 C -0.091 4.091 16 N -0.317 5.317 17 C 0.232 3.768 18 C -0.542 4.542 19 H 0.081 0.919 20 C 0.079 3.921 21 N -0.886 5.886 22 Si 0.873 3.127 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.263 1.263 26 N -0.317 5.317 27 O -0.157 6.157 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.411 0.589 37 H 0.160 0.840 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.466 10.820 16.979 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.061 4.061 3 C -0.234 4.234 4 C -0.220 4.220 5 C -0.040 4.040 6 C -0.044 4.044 7 H 0.147 0.853 8 C -0.205 4.205 9 C 0.305 3.695 10 O -0.373 6.373 11 N -0.277 5.277 12 C 0.015 3.985 13 C -0.317 4.317 14 C -0.036 4.036 15 C -0.149 4.149 16 N -0.099 5.099 17 C 0.113 3.887 18 C -0.580 4.580 19 H 0.099 0.901 20 C -0.125 4.125 21 N -0.523 5.523 22 Si 0.698 3.302 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.188 1.188 26 N -0.147 5.147 27 O -0.053 6.053 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.246 0.754 37 H 0.178 0.822 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.949 9.888 16.540 23.789 hybrid contribution 0.074 -0.322 -0.046 0.333 sum -13.875 9.566 16.494 23.581 Atomic orbital electron populations 1.20295 0.85267 1.03776 1.03642 1.22439 0.94029 0.84235 1.05378 1.21489 0.92575 0.99285 1.10092 1.21504 0.98404 0.93393 1.08677 1.21372 0.82754 0.93307 1.06589 1.19839 0.94926 0.95078 0.94566 0.85285 1.21851 1.03779 0.99487 0.95372 1.20379 0.81628 0.80121 0.87375 1.90691 1.34059 1.66936 1.45571 1.42417 1.27528 1.35679 1.22090 1.18970 0.95721 0.94544 0.89311 1.21265 1.05835 1.07970 0.96665 1.21058 0.89593 0.95363 0.97546 1.20410 0.98954 1.02407 0.93146 1.48520 1.17347 1.29126 1.14868 1.19998 0.92906 0.84015 0.91808 1.21181 1.19832 0.96157 1.20809 0.90101 1.24814 0.94426 0.98797 0.94496 1.69877 1.22769 1.35841 1.23810 0.86902 0.78463 0.85492 0.79297 1.19594 1.20482 1.18790 1.77250 1.22036 1.14079 1.01335 1.83973 1.15898 1.34717 1.70693 0.90002 0.90629 0.89496 0.83603 0.83449 0.90790 0.90607 0.91244 0.75359 0.82235 0.91055 0.89803 0.90359 0.93197 0.93649 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.42 36.01 0.38 -0.15 16 2 C -0.01 -0.11 7.32 -35.62 -0.26 -0.37 16 3 C -0.22 -2.26 10.81 -39.70 -0.43 -2.69 16 4 C -0.20 -2.19 10.78 -39.70 -0.43 -2.62 16 5 C 0.01 0.13 5.21 -35.62 -0.19 -0.06 16 6 C -0.02 -0.23 3.13 -92.92 -0.29 -0.52 16 7 H 0.13 0.92 8.10 -51.93 -0.42 0.50 16 8 C -0.15 -1.15 9.07 37.16 0.34 -0.81 16 9 C 0.52 7.57 7.12 -10.98 -0.08 7.50 16 10 O -0.50 -9.21 12.92 -1.63 -0.02 -9.23 16 11 N -0.63 -9.50 5.34 -11.13 -0.06 -9.56 16 12 C 0.27 5.38 8.11 -154.38 -1.25 4.13 16 13 C -0.29 -5.91 9.52 -39.83 -0.38 -6.29 16 14 C 0.10 1.99 6.92 -82.28 -0.57 1.42 16 15 C -0.09 -1.53 9.89 36.01 0.36 -1.18 16 16 N -0.32 -7.36 3.59 -58.32 -0.21 -7.57 16 17 C 0.23 5.57 4.88 -5.19 -0.03 5.55 16 18 C -0.54 -15.15 9.94 -34.44 -0.34 -15.49 16 19 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 20 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 21 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 22 Si 0.87 20.06 27.47 -169.99 -4.67 15.39 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 26 N -0.32 -7.17 12.59 31.44 0.40 -6.78 16 27 O -0.16 -2.13 10.34 -1.47 -0.02 -2.14 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.07 0.46 7.56 -51.93 -0.39 0.07 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.41 4.79 8.24 -40.82 -0.34 4.46 16 37 H 0.16 3.26 5.92 -52.49 -0.31 2.95 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 1.21 7.20 -51.93 -0.37 0.83 16 42 H 0.05 1.00 7.08 -51.93 -0.37 0.64 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -35.72 366.83 -7.54 -43.26 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.00 Total: 6.12 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -3.27 Total: -9.50 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.90 Total: -49.42 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.04 Total: -11.38 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.67 Total: 15.39 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.72 -7.54 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767933363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.993 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds