Wall clock time and date at job start Tue Mar 31 2020 11:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34504 * 125.79227 * 2 1 4 4 C 1.41386 * 106.84211 * 180.02562 * 3 2 1 5 5 C 1.34507 * 106.83773 * 0.02562 * 4 3 2 6 6 C 1.50709 * 125.78764 * 180.02562 * 5 4 3 7 7 H 1.08990 * 109.46910 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.47147 * 119.99783 * 6 5 4 9 9 C 1.50704 * 109.46659 * 239.99504 * 6 5 4 10 10 O 1.21291 * 120.00259 * 0.02562 * 9 6 5 11 11 N 1.34779 * 119.99258 * 179.97438 * 9 6 5 12 12 C 1.40162 * 119.99437 * 180.02562 * 11 9 6 13 13 C 1.40415 * 125.97631 * 0.31570 * 12 11 9 14 14 C 1.35232 * 107.86655 * 180.13084 * 13 12 11 15 15 C 1.50703 * 126.06766 * 179.84998 * 14 13 12 16 16 N 1.34968 * 107.86163 * 359.58679 * 14 13 12 17 17 C 1.46509 * 125.97450 * 180.23081 * 16 14 13 18 18 C 1.50698 * 109.47025 * 89.99735 * 17 16 14 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99698 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00426 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46895 * 89.99951 * 22 20 18 24 24 H 1.48496 * 109.46922 * 209.99736 * 22 20 18 25 25 H 1.48503 * 109.46783 * 329.99868 * 22 20 18 26 26 N 1.31221 * 125.97269 * 179.97438 * 12 11 9 27 27 O 1.34302 * 108.42339 * 0.26188 * 5 4 3 28 28 H 1.08998 * 109.47008 * 89.99206 * 1 2 3 29 29 H 1.08994 * 109.47030 * 209.99854 * 1 2 3 30 30 H 1.08995 * 109.46593 * 329.99495 * 1 2 3 31 31 H 1.08000 * 126.58184 * 0.02562 * 3 2 1 32 32 H 1.07994 * 126.58097 * 180.02562 * 4 3 2 33 33 H 1.08994 * 109.47377 * 179.97438 * 8 6 5 34 34 H 1.09001 * 109.47039 * 300.00083 * 8 6 5 35 35 H 1.09003 * 109.47029 * 60.00039 * 8 6 5 36 36 H 0.96991 * 120.00480 * 0.02562 * 11 9 6 37 37 H 1.07995 * 126.06342 * 0.02562 * 13 12 11 38 38 H 1.09002 * 109.47152 * 269.68932 * 15 14 13 39 39 H 1.09001 * 109.46980 * 149.69032 * 15 14 13 40 40 H 1.09004 * 109.47113 * 29.69013 * 15 14 13 41 41 H 1.08994 * 109.46750 * 210.00045 * 17 16 14 42 42 H 1.09004 * 109.46474 * 329.99737 * 17 16 14 43 43 H 0.96998 * 119.99850 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6310 0.6319 -0.0006 5 6 3.5814 -0.7123 -0.0015 6 6 4.7706 -1.6381 -0.0019 7 1 5.6885 -1.0504 -0.0017 8 6 4.7297 -2.5213 1.2468 9 6 4.7307 -2.5064 -1.2329 10 8 3.8260 -2.3852 -2.0316 11 7 5.7010 -3.4171 -1.4468 12 6 5.6642 -4.2244 -2.5920 13 6 4.6841 -4.1865 -3.5968 14 6 5.0034 -5.1186 -4.5231 15 6 4.2251 -5.4271 -5.7762 16 7 6.1459 -5.7194 -4.1291 17 6 6.8476 -6.7878 -4.8451 18 6 7.8439 -6.1823 -5.8001 19 1 7.9446 -5.1091 -5.8667 20 6 8.6274 -6.9986 -6.5879 21 7 9.4966 -6.4702 -7.4217 22 14 8.4537 -8.8549 -6.4722 23 1 7.4303 -9.3178 -7.4436 24 1 9.7571 -9.4944 -6.7840 25 1 8.0355 -9.2280 -5.0970 26 7 6.5431 -5.1434 -2.9157 27 8 2.2924 -1.0895 -0.0073 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8899 0.5139 31 1 1.9667 2.1203 0.0004 32 1 4.5213 1.2431 -0.0004 33 1 5.5895 -3.1911 1.2463 34 1 4.7585 -1.8932 2.1372 35 1 3.8117 -3.1090 1.2462 36 1 6.4247 -3.5138 -0.8083 37 1 3.8266 -3.5306 -3.6240 38 1 3.4908 -6.2047 -5.5657 39 1 4.9080 -5.7727 -6.5522 40 1 3.7134 -4.5269 -6.1170 41 1 7.3698 -7.4226 -4.1294 42 1 6.1267 -7.3857 -5.4028 43 1 10.0476 -7.0445 -7.9763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767933363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:59 Heat of formation + Delta-G solvation = 31.775076 kcal Electronic energy + Delta-G solvation = -25772.617618 eV Core-core repulsion = 22013.535425 eV Total energy + Delta-G solvation = -3759.082193 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.56899 -42.36795 -40.75374 -36.41403 -35.58841 -35.09828 -34.05992 -33.19227 -32.83643 -31.90263 -29.06713 -27.93522 -27.40409 -25.71093 -24.33908 -22.85878 -22.62726 -21.31002 -21.22199 -20.47127 -19.24322 -18.22338 -17.93221 -17.39498 -17.01110 -16.86813 -16.62786 -16.27691 -15.58715 -15.49531 -15.11313 -14.95102 -14.52787 -14.37729 -13.94164 -13.92240 -13.79793 -13.71977 -13.71283 -13.68048 -13.36108 -13.26058 -12.99115 -12.83352 -12.59683 -12.53560 -12.45022 -12.28944 -11.85024 -11.60544 -11.45605 -10.92844 -10.89658 -10.75364 -9.63864 -9.21463 -9.15529 -8.41337 -6.52812 0.70202 0.82529 1.26627 1.33829 1.34859 1.39935 1.48152 1.70726 1.99199 2.13746 2.26147 2.29446 2.90898 3.39322 3.52181 3.82506 3.91798 3.99457 4.05794 4.16623 4.22504 4.40288 4.53042 4.58039 4.70231 4.71204 4.71260 4.73797 4.77137 4.83084 4.87784 4.93748 4.94302 5.06897 5.08344 5.17801 5.19959 5.22003 5.31003 5.67641 5.83129 5.96825 6.19132 6.27611 6.34365 6.50943 6.89081 7.04586 7.11237 8.75352 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027342 B = 0.002568 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.812032 B =10901.797128 C =11262.619607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.028 4.028 3 C -0.226 4.226 4 C -0.204 4.204 5 C -0.016 4.016 6 C -0.012 4.012 7 H 0.165 0.835 8 C -0.143 4.143 9 C 0.520 3.480 10 O -0.541 6.541 11 N -0.619 5.619 12 C 0.274 3.726 13 C -0.301 4.301 14 C 0.091 3.909 15 C -0.089 4.089 16 N -0.342 5.342 17 C 0.242 3.758 18 C -0.551 4.551 19 H 0.023 0.977 20 C 0.022 3.978 21 N -0.937 5.937 22 Si 0.951 3.049 23 H -0.250 1.250 24 H -0.278 1.278 25 H -0.244 1.244 26 N -0.351 5.351 27 O -0.186 6.186 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.169 0.831 32 H 0.170 0.830 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.427 0.573 37 H 0.161 0.839 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.583 10.349 18.502 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.078 4.078 3 C -0.244 4.244 4 C -0.223 4.223 5 C -0.067 4.067 6 C -0.033 4.033 7 H 0.182 0.818 8 C -0.200 4.200 9 C 0.307 3.693 10 O -0.415 6.415 11 N -0.269 5.269 12 C 0.020 3.980 13 C -0.332 4.332 14 C -0.039 4.039 15 C -0.147 4.147 16 N -0.124 5.124 17 C 0.122 3.878 18 C -0.589 4.589 19 H 0.041 0.959 20 C -0.178 4.178 21 N -0.575 5.575 22 Si 0.772 3.228 23 H -0.175 1.175 24 H -0.203 1.203 25 H -0.167 1.167 26 N -0.181 5.181 27 O -0.083 6.083 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.131 0.869 31 H 0.186 0.814 32 H 0.187 0.813 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.069 0.931 36 H 0.266 0.734 37 H 0.179 0.821 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.072 9.445 18.104 25.380 hybrid contribution 0.367 0.040 -0.491 0.615 sum -14.705 9.485 17.612 24.827 Atomic orbital electron populations 1.20463 0.83059 1.05212 1.04215 1.23218 0.95578 0.84027 1.04971 1.21878 0.92493 1.00302 1.09764 1.21904 0.99507 0.93293 1.07567 1.21789 0.82812 0.94211 1.07845 1.19983 0.95848 0.94674 0.92748 0.81817 1.21877 1.03636 0.99563 0.94951 1.21330 0.80326 0.79533 0.88124 1.90663 1.35541 1.67995 1.47336 1.42551 1.28452 1.34976 1.20966 1.19329 0.94563 0.93805 0.90303 1.21421 1.06280 1.08269 0.97247 1.21737 0.88968 0.94627 0.98553 1.20550 0.98898 1.04323 0.90912 1.48453 1.18316 1.30050 1.15614 1.19788 0.92657 0.84271 0.91088 1.21245 1.21637 0.93647 1.22421 0.95862 1.25843 0.93445 1.05050 0.93481 1.70038 1.24063 1.38387 1.25055 0.85674 0.78986 0.77470 0.80686 1.17453 1.20309 1.16738 1.77166 1.23428 1.15581 1.01958 1.83956 1.16841 1.36135 1.71350 0.89739 0.90347 0.86921 0.81362 0.81265 0.88999 0.88417 0.93078 0.73374 0.82124 0.87966 0.91161 0.88503 0.93119 0.91000 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.42 71.24 0.74 -0.23 16 2 C -0.03 -0.60 7.32 24.83 0.18 -0.42 16 3 C -0.23 -4.41 10.81 22.19 0.24 -4.17 16 4 C -0.20 -4.13 10.78 22.19 0.24 -3.89 16 5 C -0.02 -0.38 5.21 24.83 0.13 -0.25 16 6 C -0.01 -0.22 3.13 -12.28 -0.04 -0.25 16 7 H 0.16 1.86 8.10 -2.39 -0.02 1.84 16 8 C -0.14 -1.95 9.07 71.98 0.65 -1.29 16 9 C 0.52 14.82 7.12 87.66 0.62 15.45 16 10 O -0.54 -20.10 12.92 3.80 0.05 -20.05 16 11 N -0.62 -18.35 5.34 -307.50 -1.64 -19.99 16 12 C 0.27 11.12 8.11 133.32 1.08 12.20 16 13 C -0.30 -12.57 9.52 22.11 0.21 -12.35 16 14 C 0.09 3.82 6.92 41.38 0.29 4.11 16 15 C -0.09 -2.91 9.89 71.24 0.70 -2.20 16 16 N -0.34 -16.06 3.59 -338.43 -1.22 -17.28 16 17 C 0.24 11.57 4.88 85.63 0.42 11.99 16 18 C -0.55 -31.77 9.94 25.60 0.25 -31.51 16 19 H 0.02 1.56 8.06 -2.91 -0.02 1.53 16 20 C 0.02 1.21 5.47 84.65 0.46 1.68 16 21 N -0.94 -57.09 13.96 21.45 0.30 -56.79 16 22 Si 0.95 40.73 27.47 68.60 1.88 42.61 16 23 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 24 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 26 N -0.35 -16.12 12.59 -54.44 -0.69 -16.81 16 27 O -0.19 -5.01 10.34 4.38 0.05 -4.96 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16 31 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 32 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.09 0.91 7.56 -2.39 -0.02 0.89 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.43 9.45 8.24 -92.71 -0.76 8.68 16 37 H 0.16 6.65 5.92 -2.91 -0.02 6.64 16 38 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.07 2.50 7.71 -2.39 -0.02 2.48 16 40 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 41 H 0.05 2.40 7.20 -2.39 -0.02 2.38 16 42 H 0.07 3.04 7.08 -2.39 -0.02 3.02 16 43 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -81.92 366.83 5.14 -76.78 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.22 Total: 27.65 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 6.19 Total: -11.16 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -3.25 Total: -110.88 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.09 Total: -25.01 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 1.88 Total: 42.61 kcal Total: -81.92 5.14 -76.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767933363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.559 kcal (2) G-P(sol) polarization free energy of solvation -81.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds