Wall clock time and date at job start Tue Mar 31 2020 11:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34511 * 125.79297 * 2 1 4 4 C 1.41377 * 106.84190 * 179.75122 * 3 2 1 5 5 C 1.34517 * 106.84094 * 0.37323 * 4 3 2 6 6 C 1.50703 * 125.78882 * 179.88854 * 5 4 3 7 7 H 1.08995 * 109.47208 * 359.71973 * 6 5 4 8 8 C 1.52995 * 109.47083 * 239.71124 * 6 5 4 9 9 C 1.50709 * 109.46871 * 119.71584 * 6 5 4 10 10 O 1.21287 * 119.99706 * 359.97438 * 9 6 5 11 11 N 1.34774 * 119.99641 * 180.02562 * 9 6 5 12 12 C 1.40160 * 119.99582 * 179.97438 * 11 9 6 13 13 C 1.40415 * 125.97629 * 0.31868 * 12 11 9 14 14 C 1.35232 * 107.86655 * 180.16795 * 13 12 11 15 15 C 1.50703 * 126.06766 * 179.84998 * 14 13 12 16 16 N 1.34973 * 107.86541 * 359.58610 * 14 13 12 17 17 C 1.46500 * 125.97897 * 180.22982 * 16 14 13 18 18 C 1.50698 * 109.46965 * 89.99833 * 17 16 14 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99698 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00426 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47145 * 89.99942 * 22 20 18 24 24 H 1.48501 * 109.46994 * 210.00072 * 22 20 18 25 25 H 1.48503 * 109.46783 * 329.99868 * 22 20 18 26 26 N 1.31221 * 125.97288 * 180.02562 * 12 11 9 27 27 O 1.34300 * 108.42140 * 359.62507 * 5 4 3 28 28 H 1.09003 * 109.47445 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47059 * 300.00038 * 1 2 3 30 30 H 1.09000 * 109.47184 * 59.99585 * 1 2 3 31 31 H 1.08001 * 126.57428 * 0.02562 * 3 2 1 32 32 H 1.08003 * 126.58312 * 180.23217 * 4 3 2 33 33 H 1.08997 * 109.47769 * 299.99947 * 8 6 5 34 34 H 1.09005 * 109.46923 * 60.00306 * 8 6 5 35 35 H 1.09008 * 109.46901 * 180.02562 * 8 6 5 36 36 H 0.96997 * 120.00207 * 359.97438 * 11 9 6 37 37 H 1.08000 * 126.06356 * 0.05444 * 13 12 11 38 38 H 1.09002 * 109.47152 * 269.68932 * 15 14 13 39 39 H 1.09001 * 109.46980 * 149.69032 * 15 14 13 40 40 H 1.09004 * 109.47113 * 29.69013 * 15 14 13 41 41 H 1.08994 * 109.46840 * 210.00162 * 17 16 14 42 42 H 1.09004 * 109.46443 * 329.99889 * 17 16 14 43 43 H 0.96998 * 119.99850 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6319 0.0059 5 6 3.5813 -0.7123 0.0007 6 6 4.7705 -1.6380 0.0017 7 1 5.6885 -1.0503 0.0022 8 6 4.7307 -2.5207 -1.2473 9 6 4.7297 -2.5069 1.2324 10 8 3.8243 -2.3859 2.0303 11 7 5.6998 -3.4176 1.4468 12 6 5.6621 -4.2253 2.5916 13 6 4.6745 -4.1964 3.5893 14 6 4.9990 -5.1210 4.5213 15 6 4.2192 -5.4307 5.7731 16 7 6.1422 -5.7214 4.1283 17 6 6.8439 -6.7892 4.8450 18 6 6.3299 -8.1277 4.3810 19 1 5.5580 -8.1780 3.6273 20 6 6.8450 -9.2880 4.9187 21 7 6.3961 -10.4562 4.5142 22 14 8.1796 -9.2011 6.2228 23 1 7.5540 -9.1493 7.5686 24 1 9.0458 -10.4034 6.1256 25 1 9.0000 -7.9815 6.0110 26 7 6.5407 -5.1444 2.9157 27 8 2.2924 -1.0895 0.0004 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.9665 2.1203 0.0004 32 1 4.5212 1.2431 0.0110 33 1 3.8128 -3.1085 -1.2478 34 1 4.7602 -1.8923 -2.1374 35 1 5.5906 -3.1906 -1.2463 36 1 6.4240 -3.5140 0.8088 37 1 3.8102 -3.5492 3.6098 38 1 4.5770 -4.8024 6.5888 39 1 4.3554 -6.4797 6.0359 40 1 3.1611 -5.2339 5.6001 41 1 7.9128 -6.7206 4.6432 42 1 6.6688 -6.6840 5.9157 43 1 6.7582 -11.2725 4.8927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767933379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:02 Heat of formation + Delta-G solvation = 54.735056 kcal Electronic energy + Delta-G solvation = -25785.673945 eV Core-core repulsion = 22027.587372 eV Total energy + Delta-G solvation = -3758.086573 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.73296 -40.82983 -39.45047 -34.93687 -34.58799 -33.27080 -33.25070 -31.67194 -31.22149 -30.97629 -27.22753 -26.71779 -26.42055 -24.58860 -22.63197 -21.91784 -21.48801 -20.18178 -19.83682 -19.14579 -17.14072 -17.08263 -16.73644 -16.09133 -16.03291 -15.43892 -15.32805 -14.65299 -14.51027 -14.20672 -13.79161 -13.57450 -13.33118 -13.25687 -13.13412 -12.89630 -12.65698 -12.58925 -12.40075 -12.34095 -12.23495 -12.02447 -11.82999 -11.73921 -11.55448 -11.19567 -10.82137 -10.57706 -10.02202 -9.97855 -9.94547 -9.62271 -9.57537 -8.79949 -8.40461 -8.02142 -7.51177 -6.27696 -4.31050 1.56574 2.23504 2.41569 2.70182 2.75837 2.86605 3.13660 3.21941 3.22668 3.62943 3.74501 4.20226 4.21630 4.50001 4.65790 4.69398 4.87084 4.94509 5.00306 5.17115 5.22959 5.30718 5.34435 5.43254 5.48157 5.61666 5.68598 5.76189 5.84856 5.86911 6.01482 6.01726 6.17504 6.35162 6.40840 6.43700 6.52904 6.58352 6.73217 7.09430 7.27254 7.35783 7.54427 7.83748 8.17656 8.29843 8.54693 8.77917 9.27360 10.84781 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026439 B = 0.002586 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.803235 B =10826.567006 C =11145.266910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.009 4.009 3 C -0.217 4.217 4 C -0.201 4.201 5 C 0.011 3.989 6 C -0.022 4.022 7 H 0.129 0.871 8 C -0.149 4.149 9 C 0.520 3.480 10 O -0.501 6.501 11 N -0.629 5.629 12 C 0.267 3.733 13 C -0.287 4.287 14 C 0.095 3.905 15 C -0.091 4.091 16 N -0.317 5.317 17 C 0.232 3.768 18 C -0.542 4.542 19 H 0.081 0.919 20 C 0.079 3.921 21 N -0.886 5.886 22 Si 0.873 3.127 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.263 1.263 26 N -0.317 5.317 27 O -0.156 6.156 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.411 0.589 37 H 0.160 0.840 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.027 21.671 -9.031 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 C -0.236 4.236 4 C -0.220 4.220 5 C -0.040 4.040 6 C -0.044 4.044 7 H 0.146 0.854 8 C -0.206 4.206 9 C 0.305 3.695 10 O -0.373 6.373 11 N -0.277 5.277 12 C 0.015 3.985 13 C -0.317 4.317 14 C -0.036 4.036 15 C -0.149 4.149 16 N -0.099 5.099 17 C 0.113 3.887 18 C -0.580 4.580 19 H 0.099 0.901 20 C -0.125 4.125 21 N -0.523 5.523 22 Si 0.698 3.302 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.188 1.188 26 N -0.147 5.147 27 O -0.052 6.052 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.246 0.754 37 H 0.178 0.822 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.638 20.572 -8.714 23.042 hybrid contribution 0.574 0.323 0.509 0.833 sum -5.064 20.895 -8.205 23.012 Atomic orbital electron populations 1.20305 0.85265 1.04150 1.03357 1.22448 0.94051 0.84205 1.05254 1.21466 0.92570 0.99296 1.10238 1.21488 0.98361 0.93357 1.08833 1.21376 0.82797 0.93288 1.06551 1.19835 0.94855 0.95051 0.94628 0.85362 1.21861 1.03959 0.99492 0.95285 1.20383 0.81598 0.80173 0.87358 1.90689 1.33872 1.67052 1.45649 1.42417 1.27538 1.35669 1.22088 1.18970 0.96118 0.94044 0.89414 1.21265 1.05259 1.08537 0.96673 1.21059 0.89595 0.94771 0.98135 1.20411 0.98810 1.03403 0.92295 1.48520 1.18349 1.28073 1.14923 1.19996 0.93600 0.84260 0.90870 1.21182 1.23894 0.87625 1.25281 0.90098 1.24813 0.96284 0.94985 0.96443 1.69877 1.42335 0.97534 1.42555 0.86903 0.82380 0.78612 0.82264 1.19595 1.20481 1.18792 1.77251 1.23464 1.12959 1.01027 1.83994 1.15901 1.34725 1.70560 0.90498 0.89681 0.89819 0.83618 0.83505 0.91141 0.90608 0.90737 0.75358 0.82233 0.91055 0.89804 0.90358 0.93197 0.93651 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.42 36.01 0.38 -0.18 16 2 C -0.01 -0.10 7.32 -35.63 -0.26 -0.36 16 3 C -0.22 -2.26 10.81 -39.71 -0.43 -2.69 16 4 C -0.20 -2.16 10.78 -39.70 -0.43 -2.59 16 5 C 0.01 0.13 5.20 -35.62 -0.19 -0.05 16 6 C -0.02 -0.22 3.13 -92.92 -0.29 -0.52 16 7 H 0.13 0.88 8.10 -51.93 -0.42 0.45 16 8 C -0.15 -1.23 9.07 37.15 0.34 -0.89 16 9 C 0.52 7.57 7.12 -10.98 -0.08 7.49 16 10 O -0.50 -9.21 12.93 -1.29 -0.02 -9.23 16 11 N -0.63 -9.50 5.34 -11.13 -0.06 -9.56 16 12 C 0.27 5.38 8.11 -154.38 -1.25 4.13 16 13 C -0.29 -5.91 9.52 -39.83 -0.38 -6.29 16 14 C 0.10 1.99 6.92 -82.28 -0.57 1.42 16 15 C -0.09 -1.53 9.89 36.01 0.36 -1.18 16 16 N -0.32 -7.36 3.59 -58.33 -0.21 -7.57 16 17 C 0.23 5.57 4.88 -5.19 -0.03 5.55 16 18 C -0.54 -15.15 9.94 -34.44 -0.34 -15.49 16 19 H 0.08 2.57 8.06 -52.49 -0.42 2.14 16 20 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 21 N -0.89 -26.29 13.96 55.43 0.77 -25.51 16 22 Si 0.87 20.06 27.47 -169.99 -4.67 15.39 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 26 N -0.32 -7.17 12.59 31.44 0.40 -6.78 16 27 O -0.16 -2.15 10.35 -1.14 -0.01 -2.16 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.51 7.56 -51.92 -0.39 0.12 16 36 H 0.41 4.79 8.24 -40.82 -0.34 4.46 16 37 H 0.16 3.26 5.92 -52.49 -0.31 2.94 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 1.21 7.20 -51.93 -0.37 0.83 16 42 H 0.05 1.00 7.07 -51.93 -0.37 0.63 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 366.85 15.07 5.53 5.53 Total: -1.00 -35.71 366.85 -7.54 -43.24 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.00 Total: 6.20 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -3.27 Total: -9.55 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.90 Total: -49.42 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.03 Total: -11.39 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.67 Total: 15.39 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.71 -7.54 -43.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767933379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.977 kcal (2) G-P(sol) polarization free energy of solvation -35.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds