Wall clock time and date at job start Tue Mar 31 2020 11:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34511 * 125.79297 * 2 1 4 4 C 1.41377 * 106.84190 * 179.75122 * 3 2 1 5 5 C 1.34517 * 106.84094 * 0.37323 * 4 3 2 6 6 C 1.50703 * 125.78882 * 179.88854 * 5 4 3 7 7 H 1.08995 * 109.47208 * 359.71973 * 6 5 4 8 8 C 1.52995 * 109.47083 * 239.71124 * 6 5 4 9 9 C 1.50709 * 109.46871 * 119.71584 * 6 5 4 10 10 O 1.21287 * 119.99706 * 359.97438 * 9 6 5 11 11 N 1.34774 * 119.99641 * 180.02562 * 9 6 5 12 12 C 1.40160 * 119.99582 * 179.97438 * 11 9 6 13 13 C 1.40415 * 125.97629 * 0.31868 * 12 11 9 14 14 C 1.35232 * 107.86655 * 180.16795 * 13 12 11 15 15 C 1.50703 * 126.06766 * 179.84998 * 14 13 12 16 16 N 1.34973 * 107.86541 * 359.58610 * 14 13 12 17 17 C 1.46500 * 125.97897 * 180.22982 * 16 14 13 18 18 C 1.50698 * 109.46965 * 89.99833 * 17 16 14 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99698 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00426 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47145 * 89.99942 * 22 20 18 24 24 H 1.48501 * 109.46994 * 210.00072 * 22 20 18 25 25 H 1.48503 * 109.46783 * 329.99868 * 22 20 18 26 26 N 1.31221 * 125.97288 * 180.02562 * 12 11 9 27 27 O 1.34300 * 108.42140 * 359.62507 * 5 4 3 28 28 H 1.09003 * 109.47445 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47059 * 300.00038 * 1 2 3 30 30 H 1.09000 * 109.47184 * 59.99585 * 1 2 3 31 31 H 1.08001 * 126.57428 * 0.02562 * 3 2 1 32 32 H 1.08003 * 126.58312 * 180.23217 * 4 3 2 33 33 H 1.08997 * 109.47769 * 299.99947 * 8 6 5 34 34 H 1.09005 * 109.46923 * 60.00306 * 8 6 5 35 35 H 1.09008 * 109.46901 * 180.02562 * 8 6 5 36 36 H 0.96997 * 120.00207 * 359.97438 * 11 9 6 37 37 H 1.08000 * 126.06356 * 0.05444 * 13 12 11 38 38 H 1.09002 * 109.47152 * 269.68932 * 15 14 13 39 39 H 1.09001 * 109.46980 * 149.69032 * 15 14 13 40 40 H 1.09004 * 109.47113 * 29.69013 * 15 14 13 41 41 H 1.08994 * 109.46840 * 210.00162 * 17 16 14 42 42 H 1.09004 * 109.46443 * 329.99889 * 17 16 14 43 43 H 0.96998 * 119.99850 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6319 0.0059 5 6 3.5813 -0.7123 0.0007 6 6 4.7705 -1.6380 0.0017 7 1 5.6885 -1.0503 0.0022 8 6 4.7307 -2.5207 -1.2473 9 6 4.7297 -2.5069 1.2324 10 8 3.8243 -2.3859 2.0303 11 7 5.6998 -3.4176 1.4468 12 6 5.6621 -4.2253 2.5916 13 6 4.6745 -4.1964 3.5893 14 6 4.9990 -5.1210 4.5213 15 6 4.2192 -5.4307 5.7731 16 7 6.1422 -5.7214 4.1283 17 6 6.8439 -6.7892 4.8450 18 6 6.3299 -8.1277 4.3810 19 1 5.5580 -8.1780 3.6273 20 6 6.8450 -9.2880 4.9187 21 7 6.3961 -10.4562 4.5142 22 14 8.1796 -9.2011 6.2228 23 1 7.5540 -9.1493 7.5686 24 1 9.0458 -10.4034 6.1256 25 1 9.0000 -7.9815 6.0110 26 7 6.5407 -5.1444 2.9157 27 8 2.2924 -1.0895 0.0004 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.9665 2.1203 0.0004 32 1 4.5212 1.2431 0.0110 33 1 3.8128 -3.1085 -1.2478 34 1 4.7602 -1.8923 -2.1374 35 1 5.5906 -3.1906 -1.2463 36 1 6.4240 -3.5140 0.8088 37 1 3.8102 -3.5492 3.6098 38 1 4.5770 -4.8024 6.5888 39 1 4.3554 -6.4797 6.0359 40 1 3.1611 -5.2339 5.6001 41 1 7.9128 -6.7206 4.6432 42 1 6.6688 -6.6840 5.9157 43 1 6.7582 -11.2725 4.8927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767933379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:01 Heat of formation + Delta-G solvation = 31.707610 kcal Electronic energy + Delta-G solvation = -25786.672490 eV Core-core repulsion = 22027.587372 eV Total energy + Delta-G solvation = -3759.085118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.56659 -42.36715 -40.75288 -36.41387 -35.58939 -35.09921 -34.05513 -33.19258 -32.83678 -31.90418 -29.06833 -27.93536 -27.41099 -25.71306 -24.34042 -22.85263 -22.62304 -21.30945 -21.22099 -20.46813 -19.24472 -18.22191 -17.93240 -17.39623 -17.00101 -16.85286 -16.68568 -16.17505 -15.70397 -15.48277 -15.08384 -14.93958 -14.49731 -14.40657 -13.95621 -13.91394 -13.80062 -13.73079 -13.68585 -13.66448 -13.43414 -13.23351 -12.95061 -12.84438 -12.59625 -12.56679 -12.48053 -12.27283 -11.85065 -11.60549 -11.45668 -10.92664 -10.89700 -10.74422 -9.63857 -9.20522 -9.15537 -8.41454 -6.53008 0.70414 0.83014 1.24991 1.34470 1.34973 1.40518 1.48192 1.71486 2.00636 2.12691 2.26130 2.30740 2.90809 3.39535 3.52447 3.82586 3.91270 3.99692 4.05768 4.16542 4.23055 4.40225 4.53001 4.55215 4.69559 4.70494 4.72388 4.73749 4.76311 4.82983 4.87751 4.93766 4.94262 5.06725 5.08303 5.17342 5.19826 5.21926 5.31328 5.68760 5.83128 5.96732 6.19224 6.28785 6.34360 6.50806 6.89154 7.04721 7.11087 8.75295 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026439 B = 0.002586 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.803235 B =10826.567006 C =11145.266910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.029 4.029 3 C -0.225 4.225 4 C -0.200 4.200 5 C -0.018 4.018 6 C -0.010 4.010 7 H 0.170 0.830 8 C -0.145 4.145 9 C 0.519 3.481 10 O -0.541 6.541 11 N -0.619 5.619 12 C 0.274 3.726 13 C -0.302 4.302 14 C 0.091 3.909 15 C -0.089 4.089 16 N -0.342 5.342 17 C 0.242 3.758 18 C -0.552 4.552 19 H 0.022 0.978 20 C 0.021 3.979 21 N -0.937 5.937 22 Si 0.951 3.049 23 H -0.250 1.250 24 H -0.278 1.278 25 H -0.244 1.244 26 N -0.351 5.351 27 O -0.189 6.189 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.170 0.830 32 H 0.173 0.827 33 H 0.045 0.955 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.427 0.573 37 H 0.161 0.839 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 24.133 -8.499 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C -0.244 4.244 4 C -0.219 4.219 5 C -0.069 4.069 6 C -0.031 4.031 7 H 0.187 0.813 8 C -0.203 4.203 9 C 0.307 3.693 10 O -0.415 6.415 11 N -0.270 5.270 12 C 0.020 3.980 13 C -0.332 4.332 14 C -0.039 4.039 15 C -0.147 4.147 16 N -0.124 5.124 17 C 0.122 3.878 18 C -0.590 4.590 19 H 0.041 0.959 20 C -0.178 4.178 21 N -0.576 5.576 22 Si 0.772 3.228 23 H -0.174 1.174 24 H -0.203 1.203 25 H -0.167 1.167 26 N -0.181 5.181 27 O -0.086 6.086 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.187 0.813 32 H 0.191 0.809 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.266 0.734 37 H 0.179 0.821 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.491 23.069 -8.218 24.897 hybrid contribution 0.053 -0.365 0.212 0.425 sum -4.438 22.704 -8.006 24.480 Atomic orbital electron populations 1.20465 0.83237 1.04268 1.05073 1.23213 0.95551 0.84081 1.05067 1.21857 0.92508 1.00243 1.09746 1.21903 0.99492 0.93106 1.07372 1.21810 0.82742 0.94301 1.07999 1.19981 0.96042 0.94600 0.92470 0.81319 1.21888 1.03428 0.99637 0.95310 1.21344 0.80287 0.79599 0.88115 1.90662 1.35321 1.68120 1.47436 1.42554 1.28476 1.34980 1.20942 1.19331 0.95002 0.93280 0.90387 1.21421 1.05614 1.09003 0.97185 1.21738 0.88897 0.93986 0.99263 1.20550 0.99529 1.03068 0.91535 1.48453 1.19503 1.28805 1.15675 1.19786 0.93406 0.82468 0.92138 1.21249 1.22953 0.90457 1.24323 0.95913 1.25849 0.98960 0.93995 0.99025 1.70039 1.44334 0.98669 1.44538 0.85669 0.78694 0.79303 0.79123 1.17442 1.20312 1.16698 1.77167 1.25000 1.14352 1.01615 1.83977 1.17009 1.36257 1.71330 0.91175 0.88440 0.87493 0.81278 0.80945 0.93550 0.88268 0.89127 0.73374 0.82130 0.87913 0.91180 0.88537 0.93092 0.90978 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.42 71.24 0.74 -0.30 16 2 C -0.03 -0.64 7.32 24.83 0.18 -0.45 16 3 C -0.22 -4.31 10.81 22.19 0.24 -4.07 16 4 C -0.20 -3.88 10.78 22.19 0.24 -3.64 16 5 C -0.02 -0.42 5.20 24.83 0.13 -0.29 16 6 C -0.01 -0.19 3.13 -12.28 -0.04 -0.22 16 7 H 0.17 1.71 8.10 -2.39 -0.02 1.69 16 8 C -0.15 -2.17 9.07 71.98 0.65 -1.52 16 9 C 0.52 14.81 7.12 87.66 0.62 15.43 16 10 O -0.54 -20.11 12.93 3.49 0.05 -20.07 16 11 N -0.62 -18.36 5.34 -307.50 -1.64 -20.00 16 12 C 0.27 11.13 8.11 133.33 1.08 12.21 16 13 C -0.30 -12.58 9.52 22.11 0.21 -12.37 16 14 C 0.09 3.82 6.92 41.38 0.29 4.11 16 15 C -0.09 -2.91 9.89 71.24 0.70 -2.21 16 16 N -0.34 -16.07 3.59 -338.45 -1.22 -17.29 16 17 C 0.24 11.58 4.88 85.63 0.42 11.99 16 18 C -0.55 -31.84 9.94 25.60 0.25 -31.59 16 19 H 0.02 1.53 8.06 -2.91 -0.02 1.50 16 20 C 0.02 1.21 5.47 84.65 0.46 1.67 16 21 N -0.94 -57.22 13.96 21.45 0.30 -56.92 16 22 Si 0.95 40.74 27.47 68.60 1.88 42.62 16 23 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 24 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.24 -9.61 6.54 99.48 0.65 -8.96 16 26 N -0.35 -16.13 12.59 -54.44 -0.69 -16.82 16 27 O -0.19 -5.22 10.35 4.02 0.04 -5.18 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.09 1.04 7.56 -2.38 -0.02 1.03 16 36 H 0.43 9.45 8.24 -92.71 -0.76 8.69 16 37 H 0.16 6.66 5.92 -2.91 -0.02 6.64 16 38 H 0.10 2.71 8.14 -2.39 -0.02 2.70 16 39 H 0.07 2.50 7.71 -2.39 -0.02 2.48 16 40 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 41 H 0.05 2.41 7.20 -2.39 -0.02 2.40 16 42 H 0.07 3.05 7.07 -2.39 -0.02 3.03 16 43 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -82.30 366.85 5.13 -77.17 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.22 Total: 27.74 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 6.19 Total: -11.25 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -3.25 Total: -111.03 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: 0.09 Total: -25.25 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.88 Total: 42.62 kcal Total: -82.30 5.13 -77.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767933379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.881 kcal (2) G-P(sol) polarization free energy of solvation -82.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds