Wall clock time and date at job start Tue Mar 31 2020 11:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38685 * 119.15986 * 2 1 4 4 C 1.39350 * 119.35376 * 179.97438 * 3 2 1 5 5 C 1.47748 * 121.09816 * 179.97438 * 4 3 2 6 6 O 1.21470 * 119.99991 * 179.97438 * 5 4 3 7 7 O 1.34720 * 119.99979 * 0.02562 * 5 4 3 8 8 C 1.45206 * 117.00111 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.46708 * 30.00311 * 8 7 5 10 10 C 1.52997 * 109.47147 * 269.99654 * 8 7 5 11 11 C 1.50708 * 109.46889 * 149.99758 * 8 7 5 12 12 H 1.07995 * 119.99755 * 0.02562 * 11 8 7 13 13 C 1.37873 * 119.99729 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99909 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99980 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46921 * 60.00420 * 15 13 11 17 17 H 1.48496 * 109.46933 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46946 * 300.00103 * 15 13 11 19 19 C 1.41318 * 117.80888 * 0.27081 * 4 3 2 20 20 C 1.41091 * 133.91101 * 179.71048 * 19 4 3 21 21 N 1.30261 * 108.58780 * 180.02562 * 20 19 4 22 22 N 1.39999 * 109.74722 * 359.48782 * 21 20 19 23 23 C 1.46497 * 125.90814 * 179.97438 * 22 21 20 24 24 C 1.53003 * 109.46980 * 300.77479 * 23 22 21 25 25 C 1.52993 * 109.47482 * 60.77776 * 23 22 21 26 26 C 1.37081 * 108.17925 * 0.61490 * 22 21 20 27 27 N 1.31453 * 119.15989 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47294 * 90.00396 * 1 2 3 29 29 H 1.09003 * 109.47513 * 210.00546 * 1 2 3 30 30 H 1.09002 * 109.47386 * 330.00036 * 1 2 3 31 31 H 1.07997 * 120.32766 * 359.97090 * 3 2 1 32 32 H 1.09002 * 109.47153 * 179.97438 * 10 8 7 33 33 H 1.09001 * 109.46832 * 60.00119 * 10 8 7 34 34 H 1.09004 * 109.47261 * 300.00100 * 10 8 7 35 35 H 0.97002 * 119.99804 * 180.02562 * 14 13 11 36 36 H 1.07998 * 125.70794 * 0.03409 * 20 19 4 37 37 H 1.09000 * 109.47083 * 180.78217 * 23 22 21 38 38 H 1.09005 * 109.47011 * 180.02562 * 24 23 22 39 39 H 1.08997 * 109.47583 * 300.00025 * 24 23 22 40 40 H 1.09003 * 109.47090 * 60.00360 * 24 23 22 41 41 H 1.09006 * 109.47175 * 59.99938 * 25 23 22 42 42 H 1.08996 * 109.47437 * 180.02562 * 25 23 22 43 43 H 1.09010 * 109.46801 * 300.00268 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1827 1.2111 0.0000 4 6 3.5762 1.2158 0.0005 5 6 4.3351 2.4835 0.0000 6 8 5.5496 2.4643 0.0010 7 8 3.6800 3.6607 -0.0005 8 6 4.4899 4.8659 -0.0005 9 1 5.4314 4.6709 -0.5139 10 6 4.7737 5.2895 1.4420 11 6 3.7490 5.9690 -0.7115 12 1 2.7676 5.7830 -1.1219 13 6 4.3239 7.2159 -0.8371 14 7 5.5189 7.4424 -0.3368 15 14 3.4060 8.5830 -1.7190 16 1 2.1227 8.8484 -1.0204 17 1 4.2343 9.8155 -1.7188 18 1 3.1316 8.1718 -3.1193 19 6 4.2397 -0.0319 -0.0048 20 6 5.5966 -0.4186 -0.0112 21 7 5.6575 -1.7198 -0.0148 22 7 4.3635 -2.2539 0.0008 23 6 4.0220 -3.6786 0.0016 24 6 4.6046 -4.3434 -1.2473 25 6 4.6043 -4.3419 1.2512 26 6 3.4712 -1.2133 0.0005 27 7 2.1475 -1.1479 -0.0005 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6344 2.1415 -0.0005 32 1 5.3821 6.1940 1.4421 33 1 5.3095 4.4917 1.9563 34 1 3.8321 5.4845 1.9554 35 1 5.9232 8.3198 -0.4248 36 1 6.4431 0.2520 -0.0127 37 1 2.9380 -3.7923 0.0014 38 1 4.3502 -5.4033 -1.2469 39 1 4.1898 -3.8708 -2.1376 40 1 5.6887 -4.2296 -1.2472 41 1 4.1892 -3.8683 2.1409 42 1 4.3506 -5.4020 1.2516 43 1 5.6884 -4.2281 1.2513 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777320040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:44 Heat of formation + Delta-G solvation = 7.814102 kcal Electronic energy + Delta-G solvation = -26255.750220 eV Core-core repulsion = 22495.629001 eV Total energy + Delta-G solvation = -3760.121219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.84680 -39.53455 -38.43394 -36.03844 -35.60076 -33.40323 -32.78335 -31.96459 -29.92524 -29.47818 -27.55525 -27.52883 -25.38739 -24.81596 -23.11346 -22.57709 -21.58033 -20.36327 -19.29879 -17.89390 -17.20500 -16.99583 -16.46179 -15.83415 -15.54214 -15.11483 -14.95822 -14.65828 -14.55687 -14.16049 -14.05936 -13.54565 -13.20470 -13.09714 -12.74859 -12.54142 -12.45016 -12.41729 -12.22922 -11.95729 -11.86894 -11.61884 -11.58003 -11.30763 -11.10720 -10.89808 -10.85213 -10.49251 -10.42584 -10.33554 -10.14502 -9.63217 -9.48405 -8.97836 -8.82271 -8.53244 -8.36745 -6.22217 -4.29645 0.31795 1.12649 2.02041 2.43241 3.00732 3.23892 3.25024 3.28885 3.38437 3.82473 3.92134 4.23256 4.30053 4.62292 4.66680 4.66889 4.78493 4.79868 4.98235 5.11048 5.22361 5.25104 5.38453 5.44629 5.45923 5.47235 5.49697 5.55587 5.73559 5.84852 5.87224 5.89234 6.03001 6.25444 6.47889 6.57931 6.80028 6.84161 6.84806 7.04887 7.40220 7.52646 7.66256 7.80871 7.84807 8.07229 8.49067 8.79848 9.35779 10.85170 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021551 B = 0.003094 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.906239 B = 9047.186967 C = 9827.168084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.189 3.811 3 C -0.155 4.155 4 C 0.016 3.984 5 C 0.496 3.504 6 O -0.503 6.503 7 O -0.345 6.345 8 C 0.217 3.783 9 H 0.049 0.951 10 C -0.156 4.156 11 C -0.523 4.523 12 H 0.070 0.930 13 C 0.063 3.937 14 N -0.888 5.888 15 Si 0.913 3.087 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.186 4.186 20 C 0.096 3.904 21 N -0.240 5.240 22 N -0.386 5.386 23 C 0.167 3.833 24 C -0.161 4.161 25 C -0.161 4.161 26 C 0.310 3.690 27 N -0.492 5.492 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.160 0.840 32 H 0.101 0.899 33 H 0.017 0.983 34 H 0.038 0.962 35 H 0.267 0.733 36 H 0.206 0.794 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.931 -19.965 1.452 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.039 3.961 3 C -0.177 4.177 4 C 0.004 3.996 5 C 0.339 3.661 6 O -0.393 6.393 7 O -0.261 6.261 8 C 0.165 3.835 9 H 0.067 0.933 10 C -0.213 4.213 11 C -0.561 4.561 12 H 0.088 0.912 13 C -0.139 4.139 14 N -0.526 5.526 15 Si 0.740 3.260 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.197 4.197 20 C -0.099 4.099 21 N -0.054 5.054 22 N -0.178 5.178 23 C 0.066 3.934 24 C -0.219 4.219 25 C -0.219 4.219 26 C 0.070 3.930 27 N -0.209 5.209 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.178 0.822 32 H 0.119 0.881 33 H 0.036 0.964 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.223 0.777 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.056 -21.789 1.470 22.662 hybrid contribution -0.247 2.260 -0.403 2.309 sum -6.304 -19.529 1.067 20.548 Atomic orbital electron populations 1.20798 0.87568 1.04037 1.03696 1.21183 0.96846 0.86442 0.91591 1.22239 0.93187 1.00267 1.01980 1.19274 0.93234 0.90113 0.97024 1.20764 0.86104 0.85185 0.74070 1.90743 1.14750 1.88369 1.45434 1.86551 1.43255 1.14998 1.81289 1.20732 0.91379 0.76510 0.94920 0.93307 1.22179 1.00594 1.02165 0.96406 1.20966 1.04201 0.94201 1.36728 0.91230 1.24881 0.95089 0.98404 0.95525 1.69885 1.14731 1.23394 1.44591 0.86315 0.79453 0.80253 0.80016 1.19889 1.21023 1.19953 1.19291 0.95110 0.92909 1.12368 1.24123 0.96831 0.91732 0.97220 1.76856 0.99001 1.10616 1.18916 1.48661 1.00938 1.04557 1.63615 1.21264 1.00687 0.74713 0.96779 1.22154 1.02633 1.00524 0.96606 1.22150 1.02612 1.00519 0.96596 1.18859 0.88740 0.87330 0.98025 1.66208 1.06346 1.30357 1.17959 0.89717 0.90247 0.89662 0.82214 0.88093 0.96420 0.94297 0.92264 0.77745 0.87636 0.90719 0.92156 0.91111 0.92151 0.90712 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.14 36.00 0.37 -0.52 16 2 C 0.19 2.42 6.77 -82.59 -0.56 1.86 16 3 C -0.15 -2.26 9.30 -39.00 -0.36 -2.62 16 4 C 0.02 0.27 5.93 -104.43 -0.62 -0.35 16 5 C 0.50 10.42 7.89 34.62 0.27 10.70 16 6 O -0.50 -11.44 14.40 -19.24 -0.28 -11.72 16 7 O -0.35 -7.95 9.22 -40.55 -0.37 -8.32 16 8 C 0.22 5.66 2.56 -27.88 -0.07 5.59 16 9 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 10 C -0.16 -3.85 9.33 37.16 0.35 -3.51 16 11 C -0.52 -14.28 8.90 -34.44 -0.31 -14.58 16 12 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 13 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 14 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 15 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 C -0.19 -3.14 6.02 -106.62 -0.64 -3.78 16 20 C 0.10 1.54 11.29 -17.14 -0.19 1.34 16 21 N -0.24 -3.60 12.29 30.79 0.38 -3.22 16 22 N -0.39 -5.38 3.33 -53.92 -0.18 -5.56 16 23 C 0.17 1.70 3.70 -67.93 -0.25 1.45 16 24 C -0.16 -1.40 9.44 37.16 0.35 -1.05 16 25 C -0.16 -1.38 9.46 37.15 0.35 -1.03 16 26 C 0.31 4.80 7.96 -156.06 -1.24 3.56 16 27 N -0.49 -7.01 10.25 -8.59 -0.09 -7.10 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 31 H 0.16 2.14 7.70 -52.49 -0.40 1.74 16 32 H 0.10 2.67 6.07 -51.93 -0.32 2.36 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.21 3.15 7.08 -52.49 -0.37 2.78 16 37 H 0.11 1.01 8.07 -51.93 -0.42 0.59 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 367.36 15.07 5.54 5.54 Total: -1.00 -30.91 367.36 -8.13 -39.04 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.07 Total: 1.19 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -2.66 Total: -1.33 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.74 Total: -40.01 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.65 Total: -20.04 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.91 -8.13 -39.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777320040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.850 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds