Wall clock time and date at job start Tue Mar 31 2020 11:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38685 * 119.15986 * 2 1 4 4 C 1.39350 * 119.35376 * 179.97438 * 3 2 1 5 5 C 1.47748 * 121.09816 * 179.97438 * 4 3 2 6 6 O 1.21470 * 119.99991 * 179.97438 * 5 4 3 7 7 O 1.34720 * 119.99979 * 0.02562 * 5 4 3 8 8 C 1.45206 * 117.00111 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.46708 * 30.00311 * 8 7 5 10 10 C 1.52997 * 109.47147 * 269.99654 * 8 7 5 11 11 C 1.50708 * 109.46889 * 149.99758 * 8 7 5 12 12 H 1.07995 * 119.99755 * 0.02562 * 11 8 7 13 13 C 1.37873 * 119.99729 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99909 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99980 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46921 * 60.00420 * 15 13 11 17 17 H 1.48496 * 109.46933 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46946 * 300.00103 * 15 13 11 19 19 C 1.41318 * 117.80888 * 0.27081 * 4 3 2 20 20 C 1.41091 * 133.91101 * 179.71048 * 19 4 3 21 21 N 1.30261 * 108.58780 * 180.02562 * 20 19 4 22 22 N 1.39999 * 109.74722 * 359.48782 * 21 20 19 23 23 C 1.46497 * 125.90814 * 179.97438 * 22 21 20 24 24 C 1.53003 * 109.46980 * 300.77479 * 23 22 21 25 25 C 1.52993 * 109.47482 * 60.77776 * 23 22 21 26 26 C 1.37081 * 108.17925 * 0.61490 * 22 21 20 27 27 N 1.31453 * 119.15989 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47294 * 90.00396 * 1 2 3 29 29 H 1.09003 * 109.47513 * 210.00546 * 1 2 3 30 30 H 1.09002 * 109.47386 * 330.00036 * 1 2 3 31 31 H 1.07997 * 120.32766 * 359.97090 * 3 2 1 32 32 H 1.09002 * 109.47153 * 179.97438 * 10 8 7 33 33 H 1.09001 * 109.46832 * 60.00119 * 10 8 7 34 34 H 1.09004 * 109.47261 * 300.00100 * 10 8 7 35 35 H 0.97002 * 119.99804 * 180.02562 * 14 13 11 36 36 H 1.07998 * 125.70794 * 0.03409 * 20 19 4 37 37 H 1.09000 * 109.47083 * 180.78217 * 23 22 21 38 38 H 1.09005 * 109.47011 * 180.02562 * 24 23 22 39 39 H 1.08997 * 109.47583 * 300.00025 * 24 23 22 40 40 H 1.09003 * 109.47090 * 60.00360 * 24 23 22 41 41 H 1.09006 * 109.47175 * 59.99938 * 25 23 22 42 42 H 1.08996 * 109.47437 * 180.02562 * 25 23 22 43 43 H 1.09010 * 109.46801 * 300.00268 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1827 1.2111 0.0000 4 6 3.5762 1.2158 0.0005 5 6 4.3351 2.4835 0.0000 6 8 5.5496 2.4643 0.0010 7 8 3.6800 3.6607 -0.0005 8 6 4.4899 4.8659 -0.0005 9 1 5.4314 4.6709 -0.5139 10 6 4.7737 5.2895 1.4420 11 6 3.7490 5.9690 -0.7115 12 1 2.7676 5.7830 -1.1219 13 6 4.3239 7.2159 -0.8371 14 7 5.5189 7.4424 -0.3368 15 14 3.4060 8.5830 -1.7190 16 1 2.1227 8.8484 -1.0204 17 1 4.2343 9.8155 -1.7188 18 1 3.1316 8.1718 -3.1193 19 6 4.2397 -0.0319 -0.0048 20 6 5.5966 -0.4186 -0.0112 21 7 5.6575 -1.7198 -0.0148 22 7 4.3635 -2.2539 0.0008 23 6 4.0220 -3.6786 0.0016 24 6 4.6046 -4.3434 -1.2473 25 6 4.6043 -4.3419 1.2512 26 6 3.4712 -1.2133 0.0005 27 7 2.1475 -1.1479 -0.0005 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6344 2.1415 -0.0005 32 1 5.3821 6.1940 1.4421 33 1 5.3095 4.4917 1.9563 34 1 3.8321 5.4845 1.9554 35 1 5.9232 8.3198 -0.4248 36 1 6.4431 0.2520 -0.0127 37 1 2.9380 -3.7923 0.0014 38 1 4.3502 -5.4033 -1.2469 39 1 4.1898 -3.8708 -2.1376 40 1 5.6887 -4.2296 -1.2472 41 1 4.1892 -3.8683 2.1409 42 1 4.3506 -5.4020 1.2516 43 1 5.6884 -4.2281 1.2513 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777320040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:44 Heat of formation + Delta-G solvation = -8.488603 kcal Electronic energy + Delta-G solvation = -26256.457158 eV Core-core repulsion = 22495.629001 eV Total energy + Delta-G solvation = -3760.828157 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.02282 -41.22689 -39.59076 -37.71110 -36.66508 -35.36692 -34.08221 -32.96866 -31.66274 -30.80996 -28.52833 -28.24373 -27.45521 -26.24092 -24.18002 -23.85523 -23.03298 -21.89274 -20.66326 -19.07438 -18.73794 -18.66594 -17.90341 -17.29715 -17.11236 -16.57261 -16.39319 -16.17830 -15.63041 -15.20880 -14.93528 -14.83736 -14.66213 -14.32259 -14.06062 -13.94925 -13.63317 -13.25228 -13.18556 -13.17195 -13.05571 -13.00193 -12.80377 -12.76204 -12.52520 -12.45674 -12.38340 -12.17417 -11.85539 -11.79690 -11.68221 -11.60773 -11.02248 -10.74793 -10.58592 -9.95553 -9.50996 -8.27546 -6.44483 -0.95661 -0.03895 0.98107 1.14301 1.43740 1.48068 1.54269 1.55787 1.72765 2.40288 2.56073 2.90381 3.03672 3.20083 3.40542 3.58208 3.60928 3.88270 3.91588 4.06430 4.17388 4.25084 4.33323 4.51816 4.62771 4.64086 4.71875 4.75380 4.76784 4.79098 4.83885 4.87684 4.92834 4.98474 5.11300 5.13503 5.17805 5.28144 5.42296 5.47762 5.60665 5.77825 5.86039 6.02185 6.22968 6.57427 6.67319 6.81825 7.26425 8.80025 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021551 B = 0.003094 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.906239 B = 9047.186967 C = 9827.168084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.197 3.803 3 C -0.142 4.142 4 C -0.010 4.010 5 C 0.494 3.506 6 O -0.529 6.529 7 O -0.346 6.346 8 C 0.219 3.781 9 H 0.011 0.989 10 C -0.144 4.144 11 C -0.548 4.548 12 H 0.073 0.927 13 C 0.017 3.983 14 N -0.917 5.917 15 Si 0.983 3.017 16 H -0.261 1.261 17 H -0.280 1.280 18 H -0.269 1.269 19 C -0.209 4.209 20 C 0.079 3.921 21 N -0.240 5.240 22 N -0.378 5.378 23 C 0.154 3.846 24 C -0.155 4.155 25 C -0.154 4.154 26 C 0.300 3.700 27 N -0.486 5.486 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.173 0.827 32 H 0.082 0.918 33 H 0.022 0.978 34 H 0.049 0.951 35 H 0.271 0.729 36 H 0.200 0.800 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.107 0.893 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.795 -21.289 1.190 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.046 3.954 3 C -0.164 4.164 4 C -0.021 4.021 5 C 0.339 3.661 6 O -0.420 6.420 7 O -0.262 6.262 8 C 0.166 3.834 9 H 0.029 0.971 10 C -0.201 4.201 11 C -0.585 4.585 12 H 0.091 0.909 13 C -0.183 4.183 14 N -0.555 5.555 15 Si 0.806 3.194 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.194 1.194 19 C -0.219 4.219 20 C -0.116 4.116 21 N -0.054 5.054 22 N -0.170 5.170 23 C 0.055 3.945 24 C -0.212 4.212 25 C -0.212 4.212 26 C 0.060 3.940 27 N -0.203 5.203 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.191 0.809 32 H 0.101 0.899 33 H 0.042 0.958 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.216 0.784 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.126 0.874 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.910 -23.157 1.216 24.842 hybrid contribution 0.605 2.524 -0.314 2.615 sum -8.305 -20.633 0.902 22.260 Atomic orbital electron populations 1.20983 0.83811 1.05685 1.05292 1.21922 0.98891 0.85175 0.89368 1.22526 0.91953 1.01799 1.00122 1.19093 0.94293 0.88294 1.00465 1.21412 0.86217 0.85574 0.72900 1.90720 1.16041 1.88626 1.46647 1.86523 1.42720 1.15038 1.81917 1.20450 0.90168 0.77666 0.95082 0.97131 1.22008 1.00764 1.01419 0.95944 1.21264 1.04580 0.95009 1.37658 0.90921 1.25825 0.95828 1.00724 0.95928 1.70013 1.16107 1.24121 1.45263 0.85229 0.78462 0.76864 0.78855 1.18571 1.20502 1.19354 1.19435 0.95624 0.93304 1.13566 1.24057 0.96797 0.92158 0.98576 1.76794 0.99981 1.10116 1.18543 1.49094 1.00165 1.05668 1.62096 1.21725 1.01633 0.72831 0.98320 1.22128 1.01654 1.02262 0.95202 1.22123 1.01637 1.02249 0.95183 1.19068 0.89288 0.87272 0.98390 1.66397 1.05458 1.30805 1.17636 0.87862 0.88926 0.87716 0.80940 0.89906 0.95847 0.93234 0.91992 0.78354 0.86535 0.87404 0.93267 0.92230 0.93177 0.87407 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 10.14 71.24 0.72 -0.60 16 2 C 0.20 4.59 6.77 42.72 0.29 4.88 16 3 C -0.14 -4.00 9.30 22.64 0.21 -3.79 16 4 C -0.01 -0.34 5.93 -19.74 -0.12 -0.46 16 5 C 0.49 21.66 7.89 70.34 0.56 22.22 16 6 O -0.53 -25.60 14.40 19.93 0.29 -25.31 16 7 O -0.35 -16.38 9.22 -56.30 -0.52 -16.90 16 8 C 0.22 11.85 2.56 29.85 0.08 11.93 16 9 H 0.01 0.66 7.16 -2.39 -0.02 0.64 16 10 C -0.14 -7.31 9.33 71.98 0.67 -6.63 16 11 C -0.55 -30.30 8.90 25.60 0.23 -30.07 16 12 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 13 C 0.02 0.91 5.30 84.65 0.45 1.36 16 14 N -0.92 -52.02 11.32 21.45 0.24 -51.78 16 15 Si 0.98 41.91 29.54 68.60 2.03 43.94 16 16 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 17 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 19 C -0.21 -7.22 6.02 -21.16 -0.13 -7.34 16 20 C 0.08 2.64 11.29 85.63 0.97 3.61 16 21 N -0.24 -7.35 12.29 -56.51 -0.69 -8.04 16 22 N -0.38 -10.35 3.33 -324.50 -1.08 -11.43 16 23 C 0.15 2.87 3.70 44.99 0.17 3.04 16 24 C -0.15 -2.39 9.44 71.98 0.68 -1.71 16 25 C -0.15 -2.36 9.46 71.98 0.68 -1.67 16 26 C 0.30 9.12 7.96 134.11 1.07 10.18 16 27 N -0.49 -12.94 10.25 -181.10 -1.86 -14.80 16 28 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.03 8.07 -2.39 -0.02 1.01 16 31 H 0.17 4.33 7.70 -2.91 -0.02 4.31 16 32 H 0.08 4.52 6.07 -2.39 -0.01 4.51 16 33 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 36 H 0.20 6.70 7.08 -2.91 -0.02 6.68 16 37 H 0.12 1.94 8.07 -2.39 -0.02 1.92 16 38 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -68.85 367.36 5.94 -62.91 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 1.02 Total: 16.47 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 6.52 Total: 4.94 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -3.39 Total: -86.05 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.23 Total: -42.21 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -68.85 5.94 -62.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777320040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.422 kcal (2) G-P(sol) polarization free energy of solvation -68.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds