Wall clock time and date at job start Tue Mar 31 2020 11:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38378 * 119.92497 * 2 1 4 4 C 1.38335 * 120.29173 * 180.02562 * 3 2 1 5 5 C 1.37979 * 120.14584 * 0.25388 * 4 3 2 6 6 C 1.39559 * 119.85071 * 359.51446 * 5 4 3 7 7 C 1.47845 * 120.14618 * 180.25220 * 6 5 4 8 8 O 1.21551 * 120.00141 * 180.23724 * 7 6 5 9 9 N 1.34779 * 119.99665 * 0.22893 * 7 6 5 10 10 N 1.40106 * 119.99780 * 179.97438 * 9 7 6 11 11 C 1.34773 * 119.99666 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00669 * 0.02562 * 11 10 9 13 13 C 1.50709 * 119.99633 * 180.02562 * 11 10 9 14 14 N 1.46497 * 109.47038 * 180.02562 * 13 11 10 15 15 C 1.36936 * 119.99944 * 269.99410 * 14 13 11 16 16 H 1.08002 * 120.00211 * 141.42956 * 15 14 13 17 17 C 1.38806 * 120.00256 * 321.43463 * 15 14 13 18 18 N 1.31620 * 120.00666 * 157.75604 * 17 15 14 19 19 Si 1.86805 * 119.99808 * 337.76019 * 17 15 14 20 20 H 1.48496 * 109.47411 * 95.68045 * 19 17 15 21 21 H 1.48507 * 109.47117 * 215.67907 * 19 17 15 22 22 H 1.48501 * 109.46783 * 335.67919 * 19 17 15 23 23 C 1.46502 * 120.00215 * 89.99564 * 14 13 11 24 24 C 1.52996 * 117.49835 * 183.19345 * 23 14 13 25 25 C 1.53002 * 117.49743 * 114.53770 * 23 14 13 26 26 C 1.37930 * 119.92801 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47582 * 89.99801 * 1 2 3 28 28 H 1.09004 * 109.46912 * 210.00055 * 1 2 3 29 29 H 1.09004 * 109.47324 * 329.99441 * 1 2 3 30 30 H 1.07998 * 119.85564 * 0.02562 * 3 2 1 31 31 H 1.07999 * 119.93223 * 179.97438 * 4 3 2 32 32 H 1.07996 * 120.07722 * 179.74571 * 5 4 3 33 33 H 0.96998 * 120.00337 * 0.02562 * 9 7 6 34 34 H 0.96998 * 119.99882 * 0.02562 * 10 9 7 35 35 H 1.09002 * 109.46549 * 299.99375 * 13 11 10 36 36 H 1.08999 * 109.47310 * 59.99337 * 13 11 10 37 37 H 0.96996 * 120.00731 * 180.02562 * 18 17 15 38 38 H 1.08998 * 115.54938 * 328.86589 * 23 14 13 39 39 H 1.09006 * 117.50207 * 0.02562 * 24 23 14 40 40 H 1.09000 * 117.49955 * 145.02188 * 24 23 14 41 41 H 1.09006 * 117.49518 * 214.98513 * 25 23 14 42 42 H 1.09000 * 117.49740 * 359.97123 * 25 23 14 43 43 H 1.08008 * 120.07911 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5806 1.2081 -0.0005 5 6 4.2812 0.0194 -0.0064 6 6 3.5911 -1.1936 -0.0015 7 6 4.3352 -2.4711 -0.0020 8 8 3.7315 -3.5261 -0.0021 9 7 5.6830 -2.4659 -0.0026 10 7 6.3882 -3.6766 -0.0026 11 6 7.7359 -3.6713 -0.0027 12 8 8.3383 -2.6187 -0.0023 13 6 8.4944 -4.9736 -0.0032 14 7 9.9337 -4.7004 -0.0026 15 6 10.6068 -4.5721 -1.1882 16 1 11.3855 -3.8306 -1.2896 17 6 10.2882 -5.3948 -2.2598 18 7 10.5839 -5.0217 -3.4868 19 14 9.4394 -7.0317 -1.9604 20 1 7.9731 -6.8669 -2.1271 21 1 9.9388 -8.0340 -2.9358 22 1 9.7317 -7.4957 -0.5804 23 6 10.6530 -4.5645 1.2665 24 6 12.1388 -4.2054 1.2014 25 6 11.7097 -5.6207 1.5962 26 6 2.1951 -1.1954 -0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 1.6538 2.1325 0.0004 31 1 4.1135 2.1475 -0.0009 32 1 5.3611 0.0277 -0.0109 33 1 6.1648 -1.6241 -0.0023 34 1 5.9064 -4.5184 -0.0025 35 1 8.2334 -5.5464 0.8866 36 1 8.2332 -5.5459 -0.8934 37 1 10.3610 -5.5964 -4.2357 38 1 10.0726 -4.1575 2.0945 39 1 12.5811 -4.0699 0.2144 40 1 12.5361 -3.5625 1.9868 41 1 11.8247 -5.9084 2.6413 42 1 11.8694 -6.4169 0.8691 43 1 1.6552 -2.1308 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777572590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:56 Heat of formation + Delta-G solvation = 24.757413 kcal Electronic energy + Delta-G solvation = -25707.170090 eV Core-core repulsion = 21947.783588 eV Total energy + Delta-G solvation = -3759.386501 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.68090 -40.57886 -39.47115 -38.59312 -36.44024 -35.28937 -34.20378 -33.45571 -32.61425 -31.66867 -28.60225 -27.72941 -26.02312 -24.95946 -23.10044 -22.93445 -22.50409 -21.75026 -21.37242 -19.22407 -19.08976 -18.23358 -17.79608 -17.43678 -16.98695 -16.72181 -16.55990 -16.30155 -15.78218 -15.74481 -15.37459 -15.15521 -14.83266 -14.59345 -14.47104 -14.12750 -14.06205 -13.78867 -13.07771 -13.01424 -12.96727 -12.68267 -12.61153 -12.47883 -12.19763 -12.05988 -11.96869 -11.85826 -11.60462 -11.44200 -11.06228 -10.92934 -10.66881 -10.07756 -9.76113 -9.43572 -8.75312 -8.24478 -5.66922 -0.26779 0.32787 0.71509 1.26365 1.38711 1.45586 1.54620 1.80015 2.36428 2.75246 2.77656 3.00891 3.12808 3.29809 3.49120 3.76317 3.90862 3.98115 4.13190 4.25075 4.25950 4.31204 4.32831 4.35119 4.38797 4.57148 4.62080 4.83484 4.86549 4.94144 4.95253 4.98567 5.21795 5.25361 5.29870 5.37107 5.50062 5.54543 5.55139 5.67221 5.87545 5.90677 6.18396 6.42815 6.75406 6.87356 7.30152 7.51743 7.89832 8.94325 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019551 B = 0.002880 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.771926 B = 9718.858373 C =10203.087487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.087 4.087 4 C -0.120 4.120 5 C -0.099 4.099 6 C -0.142 4.142 7 C 0.556 3.444 8 O -0.573 6.573 9 N -0.517 5.517 10 N -0.529 5.529 11 C 0.491 3.509 12 O -0.556 6.556 13 C 0.124 3.876 14 N -0.556 5.556 15 C -0.254 4.254 16 H 0.037 0.963 17 C -0.021 4.021 18 N -0.944 5.944 19 Si 0.932 3.068 20 H -0.263 1.263 21 H -0.306 1.306 22 H -0.238 1.238 23 C 0.102 3.898 24 C -0.192 4.192 25 C -0.195 4.195 26 C -0.073 4.073 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.132 0.868 33 H 0.432 0.568 34 H 0.434 0.566 35 H 0.128 0.872 36 H 0.078 0.922 37 H 0.265 0.735 38 H 0.118 0.882 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.069 0.931 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.994 9.456 11.547 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.105 4.105 4 C -0.138 4.138 5 C -0.118 4.118 6 C -0.146 4.146 7 C 0.345 3.655 8 O -0.453 6.453 9 N -0.263 5.263 10 N -0.281 5.281 11 C 0.276 3.724 12 O -0.430 6.430 13 C -0.007 4.007 14 N -0.273 5.273 15 C -0.383 4.383 16 H 0.054 0.946 17 C -0.218 4.218 18 N -0.587 5.587 19 Si 0.758 3.242 20 H -0.190 1.190 21 H -0.234 1.234 22 H -0.161 1.161 23 C -0.004 4.004 24 C -0.230 4.230 25 C -0.235 4.235 26 C -0.092 4.092 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.178 0.822 31 H 0.175 0.825 32 H 0.149 0.851 33 H 0.276 0.724 34 H 0.276 0.724 35 H 0.146 0.854 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.136 0.864 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.135 0.865 42 H 0.088 0.912 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.899 9.421 11.380 23.988 hybrid contribution 0.288 -0.741 -0.859 1.170 sum -18.611 8.680 10.520 23.074 Atomic orbital electron populations 1.20872 0.88609 1.04100 1.03445 1.20233 0.97978 0.92165 0.99370 1.21708 0.94256 0.98675 0.95847 1.21467 0.94807 0.98312 0.99205 1.21533 1.00474 0.91989 0.97811 1.19582 0.94607 0.91105 1.09351 1.18865 0.79957 0.90487 0.76173 1.90743 1.68404 1.33489 1.52635 1.44948 1.04309 1.02224 1.74861 1.45604 1.04226 1.00878 1.77344 1.23490 0.79461 0.94896 0.74569 1.90629 1.68305 1.34095 1.49991 1.21542 0.83715 0.91389 1.04049 1.43308 1.00925 1.81211 1.01843 1.18455 1.17900 1.13290 0.88700 0.94572 1.26190 0.99805 1.01264 0.94555 1.70018 1.51444 1.38116 0.99078 0.86011 0.78310 0.80516 0.79355 1.18962 1.23408 1.16059 1.21404 0.88673 1.02030 0.88323 1.23048 0.98543 0.99418 1.01954 1.23381 1.06360 0.92064 1.01653 1.21222 0.91922 0.99412 0.96672 0.90126 0.91210 0.89341 0.82214 0.82484 0.85059 0.72396 0.72357 0.85405 0.90459 0.92623 0.86435 0.91423 0.87306 0.86476 0.91192 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 71.24 0.71 -0.38 16 2 C -0.10 -1.49 5.87 -19.90 -0.12 -1.61 16 3 C -0.09 -1.08 9.69 22.33 0.22 -0.87 16 4 C -0.12 -1.71 10.03 22.23 0.22 -1.49 16 5 C -0.10 -1.93 9.54 22.53 0.21 -1.72 16 6 C -0.14 -3.42 5.87 -20.09 -0.12 -3.54 16 7 C 0.56 16.72 7.89 86.79 0.68 17.40 16 8 O -0.57 -20.07 16.19 -3.87 -0.06 -20.13 16 9 N -0.52 -15.97 6.21 -175.60 -1.09 -17.07 16 10 N -0.53 -17.72 6.26 -173.53 -1.09 -18.80 16 11 C 0.49 19.46 8.02 87.66 0.70 20.17 16 12 O -0.56 -26.07 16.27 -3.03 -0.05 -26.12 16 13 C 0.12 4.88 5.03 85.64 0.43 5.31 16 14 N -0.56 -25.57 1.88 -682.34 -1.28 -26.85 16 15 C -0.25 -14.30 8.95 84.03 0.75 -13.55 16 16 H 0.04 2.35 6.86 -2.91 -0.02 2.33 16 17 C -0.02 -1.22 5.30 84.86 0.45 -0.77 16 18 N -0.94 -58.95 13.97 21.65 0.30 -58.64 16 19 Si 0.93 42.87 25.08 68.60 1.72 44.59 16 20 H -0.26 -11.16 6.69 99.48 0.67 -10.49 16 21 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 22 H -0.24 -9.97 7.11 99.48 0.71 -9.26 16 23 C 0.10 3.95 6.56 44.99 0.30 4.25 16 24 C -0.19 -7.25 9.80 30.62 0.30 -6.95 16 25 C -0.19 -6.69 10.36 30.62 0.32 -6.37 16 26 C -0.07 -1.56 9.24 22.52 0.21 -1.35 16 27 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.68 8.08 -2.38 -0.02 0.66 16 29 H 0.09 0.51 8.08 -2.38 -0.02 0.49 16 30 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 31 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.13 2.38 6.40 -2.91 -0.02 2.36 16 33 H 0.43 12.60 6.04 -213.32 -1.29 11.31 16 34 H 0.43 13.03 8.00 -213.32 -1.71 11.32 16 35 H 0.13 3.80 8.07 -2.39 -0.02 3.78 16 36 H 0.08 3.23 3.40 -2.39 -0.01 3.22 16 37 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 39 H 0.07 3.07 6.45 -2.38 -0.02 3.06 16 40 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.12 3.11 8.14 -2.38 -0.02 3.09 16 42 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.13 2.85 7.65 -2.91 -0.02 2.83 16 Total: -1.00 -77.59 363.10 1.75 -75.84 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: -1.97 Total: 38.64 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 5.27 Total: 8.55 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -3.16 Total: -121.36 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.11 Total: -46.26 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.72 Total: 44.59 kcal Total: -77.59 1.75 -75.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777572590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.596 kcal (2) G-P(sol) polarization free energy of solvation -77.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds