Wall clock time and date at job start Tue Mar 31 2020 11:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31207 * 119.31083 * 2 1 4 4 C 1.32912 * 121.84874 * 180.02562 * 3 2 1 5 5 C 1.41118 * 120.21194 * 359.93021 * 4 3 2 6 6 C 1.45977 * 106.42328 * 180.02562 * 5 4 3 7 7 N 1.30199 * 107.58809 * 0.02562 * 6 5 4 8 8 N 1.36619 * 133.26680 * 179.97438 * 4 3 2 9 9 C 1.46501 * 125.33858 * 359.97438 * 8 4 3 10 10 C 1.52996 * 109.46984 * 119.95107 * 9 8 4 11 11 C 1.53000 * 109.47180 * 239.95558 * 9 8 4 12 12 C 1.39600 * 119.44978 * 0.03649 * 5 4 3 13 13 C 1.39598 * 117.94513 * 359.97438 * 12 5 4 14 14 C 1.47562 * 120.41479 * 179.72619 * 13 12 5 15 15 O 1.21493 * 120.00168 * 173.72044 * 14 13 12 16 16 O 1.34736 * 119.99541 * 353.72378 * 14 13 12 17 17 C 1.45200 * 116.99700 * 180.02562 * 16 14 13 18 18 H 1.08998 * 109.46962 * 329.99352 * 17 16 14 19 19 C 1.52995 * 109.47671 * 89.99617 * 17 16 14 20 20 C 1.50699 * 109.46980 * 209.99939 * 17 16 14 21 21 H 1.08004 * 120.00111 * 359.97438 * 20 17 16 22 22 C 1.37873 * 120.00071 * 180.02562 * 20 17 16 23 23 N 1.31516 * 120.00225 * 359.97438 * 22 20 17 24 24 Si 1.86802 * 120.00056 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47421 * 59.99430 * 24 22 20 26 26 H 1.48495 * 109.47223 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46838 * 299.99781 * 24 22 20 28 28 H 1.08996 * 109.47341 * 263.34997 * 1 2 3 29 29 H 1.09000 * 109.47207 * 23.35167 * 1 2 3 30 30 H 1.09003 * 109.46790 * 143.34859 * 1 2 3 31 31 H 1.08000 * 126.21018 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.46521 * 359.94968 * 9 8 4 33 33 H 1.09002 * 109.46863 * 60.00489 * 10 9 8 34 34 H 1.08999 * 109.46826 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.47347 * 299.99948 * 10 9 8 36 36 H 1.09002 * 109.47255 * 299.99870 * 11 9 8 37 37 H 1.09002 * 109.47385 * 59.99799 * 11 9 8 38 38 H 1.09001 * 109.46988 * 179.97438 * 11 9 8 39 39 H 1.08001 * 121.02470 * 179.97438 * 12 5 4 40 40 H 1.08995 * 109.47703 * 180.02562 * 19 17 16 41 41 H 1.09005 * 109.46955 * 300.00075 * 19 17 16 42 42 H 1.08996 * 109.46966 * 59.99345 * 19 17 16 43 43 H 0.96999 * 120.00088 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1494 1.1441 0.0000 4 6 3.4772 1.2029 -0.0005 5 6 4.2406 0.0161 0.0004 6 6 5.6415 0.4264 0.0002 7 7 5.6702 1.7281 -0.0003 8 7 4.3686 2.2382 -0.0011 9 6 4.0159 3.6602 -0.0018 10 6 4.5921 4.3292 1.2477 11 6 4.5940 4.3284 -1.2508 12 6 3.5895 -1.2188 0.0011 13 6 2.1935 -1.2223 0.0014 14 6 1.4497 -2.4967 -0.0040 15 8 0.2403 -2.4947 0.1114 16 8 2.1119 -3.6626 -0.1368 17 6 1.3157 -4.8769 -0.1341 18 1 0.4255 -4.7262 0.4765 19 6 0.9000 -5.2174 -1.5666 20 6 2.1297 -6.0100 0.4355 21 1 3.1441 -5.8351 0.7625 22 6 1.5798 -7.2701 0.5384 23 7 0.3448 -7.4832 0.1398 24 14 2.5890 -8.6749 1.2439 25 1 2.9926 -8.3449 2.6343 26 1 1.7752 -9.9169 1.2455 27 1 3.8020 -8.8795 0.4118 28 1 -0.3634 -0.1190 1.0207 29 1 -0.3633 0.9435 -0.4073 30 1 -0.3633 -0.8245 -0.6135 31 1 6.4987 -0.2305 0.0003 32 1 2.9309 3.7653 -0.0027 33 1 5.6770 4.2240 1.2485 34 1 4.3292 5.3870 1.2473 35 1 4.1802 3.8531 2.1375 36 1 5.6789 4.2233 -1.2500 37 1 4.1834 3.8518 -2.1410 38 1 4.3311 5.3863 -1.2516 39 1 4.1486 -2.1428 0.0014 40 1 0.3020 -6.1286 -1.5646 41 1 0.3112 -4.3977 -1.9786 42 1 1.7903 -5.3679 -2.1772 43 1 -0.0422 -8.3697 0.2125 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778311044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:49 Heat of formation + Delta-G solvation = 7.917654 kcal Electronic energy + Delta-G solvation = -26157.530880 eV Core-core repulsion = 22397.414151 eV Total energy + Delta-G solvation = -3760.116728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.73743 -39.73312 -38.16413 -35.91055 -35.64357 -33.40580 -32.76463 -31.74524 -30.08536 -29.43412 -27.61288 -27.58192 -25.34097 -24.39283 -23.17563 -22.55202 -21.58323 -20.02418 -19.80726 -18.16167 -17.38375 -16.63247 -16.29011 -15.85240 -15.55412 -15.21142 -15.05338 -14.70830 -14.53865 -14.08759 -13.81253 -13.55574 -13.16150 -13.09929 -12.89181 -12.58229 -12.48880 -12.18368 -12.10303 -11.87908 -11.87388 -11.65695 -11.62895 -11.26766 -11.08270 -10.97081 -10.84450 -10.53787 -10.40234 -10.29008 -9.81879 -9.56924 -9.35853 -8.95981 -8.92765 -8.51379 -8.40017 -6.20105 -4.27217 0.69268 0.81997 1.91654 2.30677 3.03271 3.25243 3.28765 3.30506 3.53778 3.83789 3.95107 4.07785 4.32063 4.44589 4.53670 4.61167 4.73119 4.78086 4.95862 5.13070 5.16497 5.19974 5.24438 5.39736 5.43784 5.54969 5.73152 5.79918 5.81020 5.83524 5.88560 5.98003 6.14575 6.28657 6.42966 6.61956 6.74260 6.88114 6.89932 7.14074 7.28951 7.57238 7.70635 7.81507 7.90722 8.11534 8.58557 8.84609 9.38218 10.87236 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023245 B = 0.002926 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.264071 B = 9565.845846 C =10354.533382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.256 3.744 3 N -0.516 5.516 4 C 0.338 3.662 5 C -0.251 4.251 6 C 0.098 3.902 7 N -0.244 5.244 8 N -0.387 5.387 9 C 0.163 3.837 10 C -0.160 4.160 11 C -0.160 4.160 12 C 0.072 3.928 13 C -0.213 4.213 14 C 0.508 3.492 15 O -0.511 6.511 16 O -0.352 6.352 17 C 0.218 3.782 18 H 0.049 0.951 19 C -0.155 4.155 20 C -0.522 4.522 21 H 0.068 0.932 22 C 0.063 3.937 23 N -0.889 5.889 24 Si 0.912 3.088 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.204 0.796 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.160 0.840 40 H 0.100 0.900 41 H 0.017 0.983 42 H 0.036 0.964 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.746 20.208 -1.084 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.233 5.233 4 C 0.098 3.902 5 C -0.261 4.261 6 C -0.101 4.101 7 N -0.055 5.055 8 N -0.178 5.178 9 C 0.062 3.938 10 C -0.218 4.218 11 C -0.218 4.218 12 C 0.044 3.956 13 C -0.218 4.218 14 C 0.352 3.648 15 O -0.403 6.403 16 O -0.268 6.268 17 C 0.165 3.835 18 H 0.066 0.934 19 C -0.213 4.213 20 C -0.560 4.560 21 H 0.087 0.913 22 C -0.139 4.139 23 N -0.526 5.526 24 Si 0.739 3.261 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.128 0.872 31 H 0.220 0.780 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.177 0.823 40 H 0.118 0.882 41 H 0.036 0.964 42 H 0.056 0.944 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.577 22.060 -1.074 23.350 hybrid contribution 0.395 -2.238 0.349 2.300 sum 7.972 19.822 -0.725 21.377 Atomic orbital electron populations 1.21178 0.86781 1.04102 1.04830 1.21338 0.97122 0.85064 0.85771 1.66611 1.05672 1.29176 1.21829 1.19160 0.89145 0.87666 0.94201 1.20469 0.94588 0.94225 1.16844 1.25116 0.95605 0.91820 0.97584 1.76621 0.98838 1.11399 1.18623 1.48440 1.00650 1.04844 1.63850 1.21315 1.00814 0.74932 0.96775 1.22143 1.02460 1.00626 0.96613 1.22142 1.02453 1.00626 0.96607 1.21493 0.92823 0.97033 0.84228 1.19918 0.93752 0.93057 1.15105 1.20490 0.85851 0.84916 0.73546 1.90722 1.14979 1.87826 1.46792 1.86526 1.43611 1.15535 1.81152 1.20659 0.91476 0.76408 0.94907 0.93351 1.22170 1.00167 1.02086 0.96878 1.20976 1.00443 0.92351 1.42250 0.91342 1.24876 0.95240 0.98564 0.95234 1.69884 1.13388 1.23004 1.46355 0.86336 0.79743 0.80460 0.79606 1.19980 1.21044 1.19939 0.89295 0.91179 0.87225 0.77959 0.87466 0.91221 0.90680 0.92146 0.91221 0.92148 0.90681 0.82265 0.88209 0.96426 0.94435 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 8.84 36.01 0.32 -1.28 16 2 C 0.26 4.04 6.82 -82.12 -0.56 3.48 16 3 N -0.52 -7.86 10.25 -8.26 -0.08 -7.95 16 4 C 0.34 4.91 7.91 -156.10 -1.23 3.67 16 5 C -0.25 -3.44 6.36 -105.20 -0.67 -4.11 16 6 C 0.10 1.07 12.30 -15.15 -0.19 0.89 16 7 N -0.24 -2.93 12.20 31.87 0.39 -2.54 16 8 N -0.39 -4.83 3.31 -53.89 -0.18 -5.01 16 9 C 0.16 1.55 3.66 -67.93 -0.25 1.31 16 10 C -0.16 -1.27 9.43 37.16 0.35 -0.92 16 11 C -0.16 -1.26 9.43 37.16 0.35 -0.91 16 12 C 0.07 1.06 9.78 -38.57 -0.38 0.68 16 13 C -0.21 -3.60 5.89 -104.85 -0.62 -4.22 16 14 C 0.51 10.43 7.79 34.53 0.27 10.70 16 15 O -0.51 -11.26 12.58 -19.26 -0.24 -11.51 16 16 O -0.35 -8.05 9.19 -40.59 -0.37 -8.43 16 17 C 0.22 5.67 2.56 -27.89 -0.07 5.59 16 18 H 0.05 1.39 7.16 -51.93 -0.37 1.01 16 19 C -0.16 -3.83 9.33 37.16 0.35 -3.49 16 20 C -0.52 -14.26 8.90 -34.44 -0.31 -14.57 16 21 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 22 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 23 N -0.89 -24.78 11.32 55.43 0.63 -24.15 16 24 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.11 1.74 5.81 -51.93 -0.30 1.44 16 31 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.11 1.03 8.03 -51.93 -0.42 0.61 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.16 2.12 7.70 -52.49 -0.40 1.72 16 40 H 0.10 2.64 6.07 -51.93 -0.32 2.32 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -30.91 364.39 -8.13 -39.04 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.01 Total: 0.96 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -2.73 Total: -1.57 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.75 Total: -39.65 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.62 Total: -19.93 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.91 -8.13 -39.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778311044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.954 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds