Wall clock time and date at job start Tue Mar 31 2020 11:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31207 * 119.31083 * 2 1 4 4 C 1.32912 * 121.84874 * 180.02562 * 3 2 1 5 5 C 1.41118 * 120.21194 * 359.93021 * 4 3 2 6 6 C 1.45977 * 106.42328 * 180.02562 * 5 4 3 7 7 N 1.30199 * 107.58809 * 0.02562 * 6 5 4 8 8 N 1.36619 * 133.26680 * 179.97438 * 4 3 2 9 9 C 1.46501 * 125.33858 * 359.97438 * 8 4 3 10 10 C 1.52996 * 109.46984 * 119.95107 * 9 8 4 11 11 C 1.53000 * 109.47180 * 239.95558 * 9 8 4 12 12 C 1.39600 * 119.44978 * 0.03649 * 5 4 3 13 13 C 1.39598 * 117.94513 * 359.97438 * 12 5 4 14 14 C 1.47562 * 120.41479 * 179.72619 * 13 12 5 15 15 O 1.21493 * 120.00168 * 173.72044 * 14 13 12 16 16 O 1.34736 * 119.99541 * 353.72378 * 14 13 12 17 17 C 1.45200 * 116.99700 * 180.02562 * 16 14 13 18 18 H 1.08998 * 109.46962 * 329.99352 * 17 16 14 19 19 C 1.52995 * 109.47671 * 89.99617 * 17 16 14 20 20 C 1.50699 * 109.46980 * 209.99939 * 17 16 14 21 21 H 1.08004 * 120.00111 * 359.97438 * 20 17 16 22 22 C 1.37873 * 120.00071 * 180.02562 * 20 17 16 23 23 N 1.31516 * 120.00225 * 359.97438 * 22 20 17 24 24 Si 1.86802 * 120.00056 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47421 * 59.99430 * 24 22 20 26 26 H 1.48495 * 109.47223 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46838 * 299.99781 * 24 22 20 28 28 H 1.08996 * 109.47341 * 263.34997 * 1 2 3 29 29 H 1.09000 * 109.47207 * 23.35167 * 1 2 3 30 30 H 1.09003 * 109.46790 * 143.34859 * 1 2 3 31 31 H 1.08000 * 126.21018 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.46521 * 359.94968 * 9 8 4 33 33 H 1.09002 * 109.46863 * 60.00489 * 10 9 8 34 34 H 1.08999 * 109.46826 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.47347 * 299.99948 * 10 9 8 36 36 H 1.09002 * 109.47255 * 299.99870 * 11 9 8 37 37 H 1.09002 * 109.47385 * 59.99799 * 11 9 8 38 38 H 1.09001 * 109.46988 * 179.97438 * 11 9 8 39 39 H 1.08001 * 121.02470 * 179.97438 * 12 5 4 40 40 H 1.08995 * 109.47703 * 180.02562 * 19 17 16 41 41 H 1.09005 * 109.46955 * 300.00075 * 19 17 16 42 42 H 1.08996 * 109.46966 * 59.99345 * 19 17 16 43 43 H 0.96999 * 120.00088 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1494 1.1441 0.0000 4 6 3.4772 1.2029 -0.0005 5 6 4.2406 0.0161 0.0004 6 6 5.6415 0.4264 0.0002 7 7 5.6702 1.7281 -0.0003 8 7 4.3686 2.2382 -0.0011 9 6 4.0159 3.6602 -0.0018 10 6 4.5921 4.3292 1.2477 11 6 4.5940 4.3284 -1.2508 12 6 3.5895 -1.2188 0.0011 13 6 2.1935 -1.2223 0.0014 14 6 1.4497 -2.4967 -0.0040 15 8 0.2403 -2.4947 0.1114 16 8 2.1119 -3.6626 -0.1368 17 6 1.3157 -4.8769 -0.1341 18 1 0.4255 -4.7262 0.4765 19 6 0.9000 -5.2174 -1.5666 20 6 2.1297 -6.0100 0.4355 21 1 3.1441 -5.8351 0.7625 22 6 1.5798 -7.2701 0.5384 23 7 0.3448 -7.4832 0.1398 24 14 2.5890 -8.6749 1.2439 25 1 2.9926 -8.3449 2.6343 26 1 1.7752 -9.9169 1.2455 27 1 3.8020 -8.8795 0.4118 28 1 -0.3634 -0.1190 1.0207 29 1 -0.3633 0.9435 -0.4073 30 1 -0.3633 -0.8245 -0.6135 31 1 6.4987 -0.2305 0.0003 32 1 2.9309 3.7653 -0.0027 33 1 5.6770 4.2240 1.2485 34 1 4.3292 5.3870 1.2473 35 1 4.1802 3.8531 2.1375 36 1 5.6789 4.2233 -1.2500 37 1 4.1834 3.8518 -2.1410 38 1 4.3311 5.3863 -1.2516 39 1 4.1486 -2.1428 0.0014 40 1 0.3020 -6.1286 -1.5646 41 1 0.3112 -4.3977 -1.9786 42 1 1.7903 -5.3679 -2.1772 43 1 -0.0422 -8.3697 0.2125 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778311044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:48 Heat of formation + Delta-G solvation = -8.156759 kcal Electronic energy + Delta-G solvation = -26158.227918 eV Core-core repulsion = 22397.414151 eV Total energy + Delta-G solvation = -3760.813767 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.80492 -41.28664 -39.42806 -37.50643 -36.61033 -35.33422 -34.00964 -32.87776 -31.67974 -30.80871 -28.75357 -28.23653 -27.41316 -25.68515 -24.14001 -23.81951 -23.03907 -21.67245 -20.79883 -19.40015 -18.86822 -18.21627 -17.90356 -17.06078 -17.00649 -16.54831 -16.52648 -16.14388 -15.48419 -15.16365 -14.94687 -14.75167 -14.55111 -14.32143 -14.02942 -13.92832 -13.81703 -13.32554 -13.20206 -13.16473 -13.14464 -12.90527 -12.85297 -12.76181 -12.49375 -12.43673 -12.34716 -12.14223 -11.85259 -11.64249 -11.53051 -11.23713 -10.96990 -10.68444 -10.55542 -10.03678 -9.49476 -8.25089 -6.41426 -0.45509 -0.38190 0.97557 1.35054 1.44901 1.48425 1.55628 1.56827 1.93211 2.43243 2.56411 2.91174 3.06023 3.10809 3.40665 3.55053 3.65298 3.88734 3.92715 4.06843 4.15608 4.23329 4.38395 4.58585 4.65075 4.66234 4.70424 4.71943 4.73641 4.77359 4.83847 4.87026 4.89949 5.03944 5.10578 5.15853 5.18031 5.29408 5.40383 5.52835 5.66573 5.74053 5.95202 6.10769 6.29568 6.62903 6.68869 6.96153 7.29876 8.82315 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023245 B = 0.002926 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.264071 B = 9565.845846 C =10354.533382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.253 3.747 3 N -0.520 5.520 4 C 0.323 3.677 5 C -0.259 4.259 6 C 0.113 3.887 7 N -0.251 5.251 8 N -0.386 5.386 9 C 0.151 3.849 10 C -0.152 4.152 11 C -0.152 4.152 12 C 0.084 3.916 13 C -0.236 4.236 14 C 0.505 3.495 15 O -0.534 6.534 16 O -0.355 6.355 17 C 0.221 3.779 18 H 0.012 0.988 19 C -0.143 4.143 20 C -0.547 4.547 21 H 0.071 0.929 22 C 0.017 3.983 23 N -0.917 5.917 24 Si 0.981 3.019 25 H -0.269 1.269 26 H -0.280 1.280 27 H -0.263 1.263 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.245 0.755 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.102 0.898 39 H 0.172 0.828 40 H 0.081 0.919 41 H 0.024 0.976 42 H 0.045 0.955 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.101 21.360 -0.926 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.103 3.897 3 N -0.237 5.237 4 C 0.082 3.918 5 C -0.269 4.269 6 C -0.085 4.085 7 N -0.062 5.062 8 N -0.176 5.176 9 C 0.051 3.949 10 C -0.210 4.210 11 C -0.210 4.210 12 C 0.057 3.943 13 C -0.242 4.242 14 C 0.352 3.648 15 O -0.426 6.426 16 O -0.272 6.272 17 C 0.168 3.832 18 H 0.030 0.970 19 C -0.201 4.201 20 C -0.584 4.584 21 H 0.089 0.911 22 C -0.183 4.183 23 N -0.555 5.555 24 Si 0.804 3.196 25 H -0.194 1.194 26 H -0.205 1.205 27 H -0.188 1.188 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.261 0.739 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.120 0.880 39 H 0.190 0.810 40 H 0.099 0.901 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.953 23.267 -0.921 25.323 hybrid contribution -0.294 -2.422 0.297 2.458 sum 9.659 20.845 -0.624 22.983 Atomic orbital electron populations 1.21091 0.86230 1.04407 1.04576 1.21438 0.97645 0.84891 0.85693 1.66637 1.06278 1.28508 1.22259 1.19509 0.89257 0.88971 0.94034 1.20691 0.96048 0.93434 1.16742 1.25795 0.95422 0.91730 0.95596 1.76652 0.98524 1.11923 1.19055 1.48843 1.00405 1.05528 1.62801 1.21647 1.01049 0.73775 0.98424 1.22096 1.01945 1.01939 0.95036 1.22095 1.01935 1.01936 0.95025 1.21596 0.91939 0.98095 0.82702 1.19704 0.94654 0.91359 1.18505 1.21079 0.85950 0.85182 0.72627 1.90712 1.16039 1.88040 1.47836 1.86500 1.43214 1.15575 1.81881 1.20355 0.90448 0.77638 0.94765 0.97047 1.21997 1.00224 1.01404 0.96474 1.21278 1.00758 0.93236 1.43164 0.91131 1.25799 0.96291 1.01029 0.95187 1.70010 1.14878 1.23747 1.46843 0.85263 0.78374 0.76950 0.79014 1.19360 1.20507 1.18766 0.89253 0.89028 0.89136 0.73863 0.87734 0.91538 0.87974 0.93475 0.91542 0.93417 0.87980 0.81048 0.90073 0.95644 0.93598 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.08 8.84 71.24 0.63 -2.45 16 2 C 0.25 8.03 6.82 43.13 0.29 8.33 16 3 N -0.52 -15.55 10.25 -180.04 -1.84 -17.40 16 4 C 0.32 9.00 7.91 134.20 1.06 10.06 16 5 C -0.26 -6.67 6.36 -20.24 -0.13 -6.80 16 6 C 0.11 2.16 12.30 86.94 1.07 3.22 16 7 N -0.25 -5.42 12.20 -53.08 -0.65 -6.06 16 8 N -0.39 -8.98 3.31 -324.42 -1.07 -10.05 16 9 C 0.15 2.61 3.66 44.99 0.16 2.78 16 10 C -0.15 -2.09 9.43 71.98 0.68 -1.41 16 11 C -0.15 -2.07 9.43 71.98 0.68 -1.39 16 12 C 0.08 2.40 9.78 22.93 0.22 2.62 16 13 C -0.24 -8.09 5.89 -20.02 -0.12 -8.21 16 14 C 0.51 21.43 7.79 70.28 0.55 21.98 16 15 O -0.53 -24.61 12.58 19.86 0.25 -24.36 16 16 O -0.36 -16.64 9.19 -56.46 -0.52 -17.16 16 17 C 0.22 11.86 2.56 29.85 0.08 11.94 16 18 H 0.01 0.70 7.16 -2.39 -0.02 0.69 16 19 C -0.14 -7.25 9.33 71.98 0.67 -6.58 16 20 C -0.55 -30.24 8.90 25.60 0.23 -30.01 16 21 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 22 C 0.02 0.90 5.30 84.65 0.45 1.35 16 23 N -0.92 -51.92 11.32 21.45 0.24 -51.68 16 24 Si 0.98 42.02 29.54 68.60 2.03 44.05 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 28 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.09 3.00 5.81 -2.39 -0.01 2.99 16 31 H 0.25 2.32 8.06 -2.91 -0.02 2.29 16 32 H 0.10 1.86 8.03 -2.39 -0.02 1.84 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.17 4.36 7.70 -2.91 -0.02 4.34 16 40 H 0.08 4.41 6.07 -2.39 -0.01 4.40 16 41 H 0.02 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -67.77 364.39 5.98 -61.79 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.02 Total: 15.44 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 6.53 Total: 5.44 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -3.32 Total: -85.19 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -0.27 Total: -41.53 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -67.77 5.98 -61.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778311044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.634 kcal (2) G-P(sol) polarization free energy of solvation -67.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds