Wall clock time and date at job start Tue Mar 31 2020 11:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31200 * 119.31042 * 2 1 4 4 C 1.32915 * 121.84701 * 179.70052 * 3 2 1 5 5 C 1.41112 * 120.20988 * 0.54149 * 4 3 2 6 6 C 1.45984 * 106.42550 * 179.65972 * 5 4 3 7 7 N 1.30202 * 107.58563 * 359.76992 * 6 5 4 8 8 N 1.36624 * 133.26338 * 179.60764 * 4 3 2 9 9 C 1.46501 * 125.33847 * 0.72430 * 8 4 3 10 10 C 1.52996 * 109.46841 * 119.71492 * 9 8 4 11 11 C 1.52994 * 109.47098 * 239.72100 * 9 8 4 12 12 C 1.39597 * 119.45296 * 359.47384 * 5 4 3 13 13 C 1.39601 * 117.94645 * 0.25060 * 12 5 4 14 14 C 1.47562 * 120.41572 * 180.02562 * 13 12 5 15 15 O 1.21488 * 119.99507 * 173.72918 * 14 13 12 16 16 O 1.34722 * 119.99857 * 353.72785 * 14 13 12 17 17 C 1.45202 * 117.00171 * 179.97438 * 16 14 13 18 18 H 1.09005 * 109.46830 * 30.00531 * 17 16 14 19 19 C 1.52994 * 109.47485 * 270.00604 * 17 16 14 20 20 C 1.50696 * 109.47141 * 149.99845 * 17 16 14 21 21 H 1.07994 * 120.00517 * 0.02562 * 20 17 16 22 22 C 1.37883 * 119.99746 * 180.02562 * 20 17 16 23 23 N 1.31509 * 120.00119 * 0.02562 * 22 20 17 24 24 Si 1.86802 * 119.99954 * 180.02562 * 22 20 17 25 25 H 1.48500 * 109.46841 * 90.00138 * 24 22 20 26 26 H 1.48493 * 109.47060 * 210.00162 * 24 22 20 27 27 H 1.48506 * 109.47149 * 330.00365 * 24 22 20 28 28 H 1.09008 * 109.46851 * 263.36783 * 1 2 3 29 29 H 1.08995 * 109.47741 * 23.36939 * 1 2 3 30 30 H 1.09001 * 109.47364 * 143.37416 * 1 2 3 31 31 H 1.08005 * 126.21255 * 179.76591 * 6 5 4 32 32 H 1.09006 * 109.46445 * 359.72143 * 9 8 4 33 33 H 1.09004 * 109.47136 * 179.97438 * 10 9 8 34 34 H 1.09010 * 109.46741 * 60.00653 * 10 9 8 35 35 H 1.08994 * 109.47622 * 300.00170 * 10 9 8 36 36 H 1.08997 * 109.47418 * 299.99581 * 11 9 8 37 37 H 1.08998 * 109.47442 * 60.00215 * 11 9 8 38 38 H 1.09004 * 109.46855 * 179.97438 * 11 9 8 39 39 H 1.08006 * 121.02499 * 180.27496 * 12 5 4 40 40 H 1.08997 * 109.47275 * 179.97438 * 19 17 16 41 41 H 1.08997 * 109.47272 * 299.99619 * 19 17 16 42 42 H 1.09004 * 109.47296 * 59.99259 * 19 17 16 43 43 H 0.97006 * 119.99993 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1493 1.1440 0.0000 4 6 3.4771 1.2029 0.0059 5 6 4.2405 0.0161 0.0009 6 6 5.6415 0.4263 0.0012 7 7 5.6702 1.7280 0.0010 8 7 4.3686 2.2382 0.0005 9 6 4.0158 3.6601 0.0005 10 6 4.5929 4.3286 1.2499 11 6 4.5930 4.3288 -1.2486 12 6 3.5894 -1.2188 0.0009 13 6 2.1934 -1.2224 0.0005 14 6 1.4496 -2.4969 0.0010 15 8 0.2402 -2.4942 0.1156 16 8 2.1118 -3.6633 -0.1256 17 6 1.3158 -4.8776 -0.1163 18 1 0.3285 -4.6680 -0.5281 19 6 1.1723 -5.3824 1.3208 20 6 1.9958 -5.9304 -0.9531 21 1 2.9327 -5.7093 -1.4426 22 6 1.4218 -7.1762 -1.0937 23 7 0.2806 -7.4454 -0.4980 24 14 2.2650 -8.4815 -2.1304 25 1 3.1837 -9.2753 -1.2754 26 1 1.2419 -9.3791 -2.7242 27 1 3.0397 -7.8276 -3.2155 28 1 -0.3633 -0.1187 1.0209 29 1 -0.3634 0.9433 -0.4076 30 1 -0.3634 -0.8247 -0.6131 31 1 6.4987 -0.2306 0.0016 32 1 2.9308 3.7652 0.0005 33 1 4.3309 5.3867 1.2497 34 1 5.6779 4.2235 1.2498 35 1 4.1817 3.8523 2.1398 36 1 5.6779 4.2237 -1.2486 37 1 4.1818 3.8525 -2.1387 38 1 4.3302 5.3866 -1.2488 39 1 4.1486 -2.1429 0.0015 40 1 0.5744 -6.2937 1.3278 41 1 2.1595 -5.5920 1.7326 42 1 0.6805 -4.6209 1.9261 43 1 -0.1234 -8.3217 -0.5973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778311045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:51 Heat of formation + Delta-G solvation = 7.873545 kcal Electronic energy + Delta-G solvation = -26156.159224 eV Core-core repulsion = 22396.040583 eV Total energy + Delta-G solvation = -3760.118641 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.73722 -39.73428 -38.16496 -35.91127 -35.64448 -33.40652 -32.76523 -31.74422 -30.08589 -29.43445 -27.61265 -27.58302 -25.34026 -24.39277 -23.17615 -22.55277 -21.58572 -20.01516 -19.81195 -18.15561 -17.38310 -16.64056 -16.29750 -15.86340 -15.58973 -15.21371 -15.00211 -14.70867 -14.53170 -14.08501 -13.82125 -13.55360 -13.17580 -13.06686 -12.90066 -12.58026 -12.47817 -12.26951 -12.04204 -11.87641 -11.85828 -11.65917 -11.65300 -11.23609 -11.10535 -10.97697 -10.83985 -10.54067 -10.38446 -10.28557 -9.84455 -9.56368 -9.36097 -8.96383 -8.91133 -8.51831 -8.39701 -6.20360 -4.27274 0.69219 0.81976 1.91626 2.30585 3.03219 3.23607 3.28956 3.32202 3.53809 3.84028 3.95127 4.07794 4.32087 4.44416 4.53633 4.61216 4.73119 4.78093 4.95830 5.12965 5.16334 5.19940 5.24450 5.39786 5.43811 5.54893 5.73135 5.80057 5.81095 5.83506 5.88426 5.98021 6.14525 6.28925 6.43323 6.61845 6.74311 6.87957 6.89673 7.14083 7.28881 7.57464 7.70367 7.81555 7.90751 8.11488 8.58576 8.84946 9.38218 10.87028 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023202 B = 0.002914 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.520835 B = 9605.242382 C =10305.850600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.256 3.744 3 N -0.516 5.516 4 C 0.338 3.662 5 C -0.251 4.251 6 C 0.098 3.902 7 N -0.244 5.244 8 N -0.387 5.387 9 C 0.163 3.837 10 C -0.160 4.160 11 C -0.160 4.160 12 C 0.072 3.928 13 C -0.213 4.213 14 C 0.508 3.492 15 O -0.512 6.512 16 O -0.352 6.352 17 C 0.217 3.783 18 H 0.049 0.951 19 C -0.155 4.155 20 C -0.521 4.521 21 H 0.069 0.931 22 C 0.063 3.937 23 N -0.888 5.888 24 Si 0.911 3.089 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.271 1.271 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.204 0.796 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.160 0.840 40 H 0.099 0.901 41 H 0.036 0.964 42 H 0.017 0.983 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.025 20.057 1.764 21.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.233 5.233 4 C 0.098 3.902 5 C -0.261 4.261 6 C -0.101 4.101 7 N -0.055 5.055 8 N -0.178 5.178 9 C 0.062 3.938 10 C -0.218 4.218 11 C -0.218 4.218 12 C 0.044 3.956 13 C -0.218 4.218 14 C 0.352 3.648 15 O -0.403 6.403 16 O -0.268 6.268 17 C 0.165 3.835 18 H 0.067 0.933 19 C -0.213 4.213 20 C -0.559 4.559 21 H 0.087 0.913 22 C -0.139 4.139 23 N -0.526 5.526 24 Si 0.738 3.262 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.196 1.196 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.128 0.872 31 H 0.220 0.780 32 H 0.125 0.875 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.177 0.823 40 H 0.118 0.882 41 H 0.056 0.944 42 H 0.036 0.964 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.862 21.911 1.807 23.349 hybrid contribution 0.317 -2.203 -0.406 2.263 sum 8.179 19.708 1.401 21.384 Atomic orbital electron populations 1.21181 0.86774 1.04171 1.04783 1.21338 0.97129 0.85060 0.85755 1.66612 1.05671 1.29179 1.21815 1.19161 0.89146 0.87664 0.94201 1.20466 0.94587 0.94226 1.16842 1.25119 0.95599 0.91823 0.97597 1.76623 0.98841 1.11396 1.18616 1.48443 1.00649 1.04845 1.63849 1.21315 1.00818 0.74930 0.96773 1.22145 1.02456 1.00632 0.96610 1.22139 1.02454 1.00620 0.96613 1.21487 0.92819 0.97022 0.84274 1.19921 0.93749 0.93064 1.15083 1.20485 0.85840 0.84899 0.73563 1.90721 1.14972 1.87932 1.46700 1.86523 1.43607 1.15506 1.81186 1.20665 0.91776 0.76314 0.94717 0.93347 1.22170 1.00613 1.02278 0.96245 1.21015 1.08555 0.95945 1.30419 0.91290 1.24879 0.94975 0.98176 0.95910 1.69894 1.17224 1.22680 1.42824 0.86280 0.79011 0.80732 0.80155 1.20360 1.20981 1.19616 0.89340 0.91162 0.87175 0.77961 0.87463 0.90680 0.91228 0.92159 0.91222 0.92127 0.90680 0.82292 0.88220 0.94439 0.96412 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 8.83 36.01 0.32 -1.28 16 2 C 0.26 4.05 6.82 -82.13 -0.56 3.49 16 3 N -0.52 -7.87 10.25 -8.26 -0.08 -7.95 16 4 C 0.34 4.91 7.91 -156.09 -1.23 3.67 16 5 C -0.25 -3.44 6.36 -105.20 -0.67 -4.11 16 6 C 0.10 1.07 12.30 -15.14 -0.19 0.88 16 7 N -0.24 -2.92 12.20 31.88 0.39 -2.54 16 8 N -0.39 -4.83 3.31 -53.89 -0.18 -5.01 16 9 C 0.16 1.56 3.66 -67.93 -0.25 1.31 16 10 C -0.16 -1.27 9.43 37.16 0.35 -0.91 16 11 C -0.16 -1.27 9.43 37.15 0.35 -0.92 16 12 C 0.07 1.05 9.78 -38.57 -0.38 0.67 16 13 C -0.21 -3.60 5.89 -104.85 -0.62 -4.22 16 14 C 0.51 10.43 7.79 34.53 0.27 10.70 16 15 O -0.51 -11.26 12.58 -19.26 -0.24 -11.50 16 16 O -0.35 -8.05 9.19 -40.55 -0.37 -8.42 16 17 C 0.22 5.66 2.56 -27.89 -0.07 5.59 16 18 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 19 C -0.16 -3.84 9.33 37.15 0.35 -3.49 16 20 C -0.52 -14.25 8.90 -34.44 -0.31 -14.55 16 21 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 22 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 23 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 24 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H 0.09 1.22 8.14 -51.92 -0.42 0.79 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.11 1.77 5.82 -51.93 -0.30 1.46 16 31 H 0.20 1.39 8.06 -52.48 -0.42 0.96 16 32 H 0.11 1.03 8.03 -51.93 -0.42 0.61 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.16 2.10 7.70 -52.48 -0.40 1.70 16 40 H 0.10 2.64 6.07 -51.93 -0.32 2.32 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -30.94 364.40 -8.13 -39.07 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.01 Total: 0.91 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -2.73 Total: -1.58 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.75 Total: -39.64 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.62 Total: -19.93 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.94 -8.13 -39.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778311045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.939 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds